mRNA_Ecto-sp13_S_contig82099.19567.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82099.19567.1
Unique NamemRNA_Ecto-sp13_S_contig82099.19567.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: D7G777_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G777_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 3.560e-103
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGELGPEALRWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGPEPASEFTAADASAFPFLQRVHGEFGFPSECKRLEAWFASASSRPRVRKTIKQDFWWWW 465
            V+ Y   GKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGEL PEALRWRSIVNDRLKSAGKRAVFSGGSETDR SLN VLQDLEACLS+GPE ASEFTAADASAFPFLQRVHGEFGFPSECKRLEAW+ASASSRP VRKTIKQDFWWWW
Sbjct:    4 VSLYGSGGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGELSPEALRWRSIVNDRLKSAGKRAVFSGGSETDRNSLNAVLQDLEACLSNGPERASEFTAADASAFPFLQRVHGEFGFPSECKRLEAWYASASSRPGVRKTIKQDFWWWW 158          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A7S1A063_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A063_NOCSC)

HSP 1 Score: 108 bits (271), Expect = 8.740e-27
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGE---LGPEA---LRWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGP---EPASEFTAADASAFPFLQRVHGEFGFPSE-CKRLEAWFASASSRPRVRKTIKQDF 453
            ++ Y P GKP WF+ LNP+G+VPVLVVDG  ++ SE  +D++         P+A    +WR  +  R+   GK  V  GGS+ ++  L+  L++LE  L +G         F+ ADA+A PF+QR+  EF  P +    L AW+     R  V KT++Q +
Sbjct:   42 ISLYGPNGKPPWFLRLNPRGQVPVLVVDGNAVIDSESILDWIATEAQHMAPPDAHLGAQWRRCIGQRVAPGGKALVLGGGSQ-EKAILHAALRELEEILQEGRGAYAAGGSFSVADAAAVPFMQRLCEEFDLPGDDTPLLRAWWERVKRRDGVAKTLQQSW 201          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A7S1R7Y9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R7Y9_ALECA)

HSP 1 Score: 94.7 bits (234), Expect = 6.080e-21
Identity = 58/161 (36.02%), Postives = 85/161 (52.80%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVVDGK-PIVGSEETVDFLMPG--ELGPE----ALRWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACL--SDGPEPASE-FTAADASAFPFLQRVHGEFGFPSECKRLEAWFASASSRPRVRKTIKQDF 453
            ++ Y   GKP WFM LNPKGE+PVL+  G   +V SE+ +D++     E+ PE       +R  ++ R+  AGK  V  GG       L+  L DL   L  S G   A + F+ ADA+A PF+QR+   +G P E   L  W+    +RP V  T+++ +
Sbjct:   77 ISLYGAGGKPEWFMKLNPKGEIPVLIKSGGGAVVDSEKILDWVAKEVPEMSPEDAAAGTAFRRCISGRVAPAGKSRVIRGGGGAG-DDLDKALGDLNDLLEASPGSYAAGDCFSVADAAAVPFVQRLDERYGLPEEAAALRRWWELVRARPGVAATLQRSW 236          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A0G4FU02_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FU02_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 8.070e-21
Identity = 59/161 (36.65%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGELGPEAL--------RWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGPEPA-----SEFTAADASAFPFLQRVHGEFGF--PSECKRLEAWFASASSRPRVRKT 438
            V+ Y   GKP WF+DLNPKG VPVLV+DG+P+  SE T+D +   EL P           +WR ++  RL   GK AV +  S+ +  +L VV+ + EA L + P           + AD SA PF  R+  E       E      W A+  +R  VR+T
Sbjct:   24 VSLYGAGGKPKWFLDLNPKGLVPVLVIDGQPVAESEATLDAI--AELAPSLATPTPSKRQQWRDMLEQRLIPVGKAAVLNPSSK-NMAALRVVIAEWEAKLRERPGKGHFLCGEALSIADVSAVPFWSRLQEEMDCVGAEEFPLTHEWLAACRAREAVRRT 181          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A7S4K6F8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6F8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.760e-16
Identity = 55/165 (33.33%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVVDG--KPIVGSE-----------ETVDFLMP-GELGPEALR-WRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGPEPASEFTAADASAFPFLQRVHGEFGFPSE--CKRLEAWFASASSRPRVRKTIK 444
            V+ Y   GKP WFMDLNP+G+VPVL   G  K  + SE           E    LMP  ++  E +  WR  +++R+   GK AV  GG   D   L  +L++++  +          T AD +AFPFL R++ E+    E  C+ +  W    ++ P   KTI+
Sbjct:  101 VSLYGAGGKPDWFMDLNPEGQVPVLTCFGGAKIFIDSEYILTRIADGVVEGGSKLMPDSDVNKEKMEEWRHDISNRVIPIGKLAVQKGGKNVDE--LMELLKEMDVKIKGPYLCGDAVTVADCAAFPFLWRINDEWPLTEENGCENIRKWLDKCTANPAFAKTIQ 263          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A7R9WB00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB00_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.850e-16
Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVVDG--KPIVGSEETVDFLMPGEL-GPEAL------------RWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGPEPASE-FTAADASAFPFLQRVHGEFGFPSE---CKRLEAWFASASSRPRVRKTIK 444
            V+ Y   GKP WF+DLNP G+VPVL   G  K  + SE  +  +  G + G   L             WR  + +R+   GK AV  GG     K L  +L++L+  +  GP    E  T AD +AFPFL R++ EFG  ++   C  +  W  + +  P   KT++
Sbjct:   71 VSLYGAGGKPDWFLDLNPDGQVPVLTCFGGAKIFIDSEYILSRIADGVVEGGSKLSMDSDDDREKMEEWRHAIANRVNPIGKAAVQRGGKNV--KELMSLLKELDGKVK-GPYLCGETVTVADCAAFPFLWRINDEFGPLTDEEGCGNIRKWLDTCAENPSFSKTVQ 234          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: W7T7B9_9STRA (Glutathione s-transferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7B9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.340e-15
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVL-VVDGKPIVGSEETVDFL--MPG-ELG---------PEAL-RWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSD--GPEP---ASEFTAADASAFPFLQRV---HGEFGFPSECKRLEAWFASASSRPRVRKTIKQDFWWWW 465
            V  Y  +GKP WF+D++PKG+VPVL +  G+ +V S+  +D L  +PG +LG         P+A    RS++N  L+SA + A+       +RK +  +   L     +  GP P    + F+AADA+  PF+QR+   H E    +   RL  W+  A+  P    T    +W WW
Sbjct:   86 VGLYGGSGKPQWFLDISPKGQVPVLWLPSGRCVVESDNILDHLTSLPGPKLGFPNPLVPASPKAYTHLRSLLNPFLRSA-RTAI-------ERKDITSLFSSLNQLDKEIIGPCPFLAGATFSAADATLLPFMQRLVDGHAEL-VEAAAPRLHEWYKDAAREPCFEATCVSGYWMWW 253          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A7S0G9J8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G9J8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.070e-14
Identity = 54/176 (30.68%), Postives = 77/176 (43.75%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVV---DGKP---IVGSEETVDFLMPGEL--GPEALR---------------WRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGPEPASEFTAADASAFPFLQRVHGEFGFPSECKR--LEAWFASASSRPRVRKTIKQDF 453
            ++ Y   GKP WF  LNP G VPVLV     G+P   I  SE+ ++  + G++  G   L                WR  +  R+   GK AV   G    +  L  +L DL + +          T AD +AFPFL R+H EFG     K   L +W  +    P  +KT++  +
Sbjct:   80 ISLYGANGKPDWFWKLNPDGTVPVLVAATAKGRPDAIIADSEDILNSFVAGDVIGGNGVLTCDENQEQSLFQKQQWWRDTIQRRVNPIGKSAVLGAG----KTKLYDLLHDLNSEVVGPYLCGDRVTVADCAAFPFLWRIHNEFGLDEVNKNSNLLSWLRTCEGNPAFQKTVQNSW 251          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A7S2AT53_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AT53_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.920e-13
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   94 IVGSEETVDFL--MPG---------ELGPEALRWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGPEPASEFTAADASAFPFLQRVHGEFGFPSECKRLEAWFASASSRPRVRKTIK 444
            +  SE T+D +  +PG         +   +   WR  +ND L   GK AV       DR  +  +L+ ++  +  GP  A +++ AD SA PF+QR+  EFG P +C+ L AW+ + SSR  V +T++
Sbjct:   11 VTQSESTLDAIAALPGGESLLPTDAQAARKVEEWRRRINDLLLPDGKMAVLGN----DRAGVESMLRVMDKSIV-GPFLAGDYSIADISAAPFIQRLESEFGLPDDCEMLRAWWIAVSSREAVAQTVQ 133          
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Match: A0A0G4FU56_VITBC (GST N-terminal domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FU56_VITBC)

HSP 1 Score: 74.7 bits (182), Expect = 2.630e-13
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 1
Query:    1 VAFYDPTGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGELGPEAL--------RWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLS-DGPEPASEFTAADASAFPFLQRVHGEFGFPSECKRLEAWFASASSRPRV 429
            V+ Y   GKP WF+DLNPKG VPVLV+DG+P+  SE T+D +   EL P           +WR ++  RL   GK AV +  S+ +  +L VV+ +     + DG   A      D     F+  +   FGF  +    + ++  ++S+P +
Sbjct:   24 VSLYGAGGKPKWFLDLNPKGLVPVLVIDGQPVAESEATLDAI--AELAPSLATPTPSKRQQWRDMLEQRLIPVGKAAVLNPSSK-NMAALRVVIAEFPGSFNLDGVREAKTIGEFDRH---FIAPI---FGFADK----KDYYMKSASKPHL 162          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82099.19567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G777_ECTSI3.560e-10392.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1A063_NOCSC8.740e-2736.65Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S1R7Y9_ALECA6.080e-2136.02Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A0G4FU02_VITBC8.070e-2136.65Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S4K6F8_9STRA1.760e-1633.33Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9WB00_9STRA3.850e-1633.53Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
W7T7B9_9STRA5.340e-1533.33Glutathione s-transferase n=1 Tax=Nannochloropsis ... [more]
A0A7S0G9J8_9STRA1.070e-1430.68Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2AT53_9STRA1.920e-1332.81Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4FU56_VITBC2.630e-1332.89GST N-terminal domain-containing protein n=1 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82099contigEcto-sp13_S_contig82099:86..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score88.2
Seed ortholog evalue3.7e-15
Seed eggNOG ortholog227086.JGI_V11_142739
Model size468
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.glutathione transferase activity
EggNOG OGsKOG0406@1,KOG0406@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_010770.1
EC2.5.1.18
Cds size468
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.601402-CDS-Ecto-sp13_S_contig82099:85..5531681464092.601402-CDS-Ecto-sp13_S_contig82099:85..553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82099 86..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82099.19567.1prot_Ecto-sp13_S_contig82099.19567.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82099 86..553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82099.19567.1

>prot_Ecto-sp13_S_contig82099.19567.1 ID=prot_Ecto-sp13_S_contig82099.19567.1|Name=mRNA_Ecto-sp13_S_contig82099.19567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
VAFYDPTGKPSWFMDLNPKGEVPVLVVDGKPIVGSEETVDFLMPGELGPE
ALRWRSIVNDRLKSAGKRAVFSGGSETDRKSLNVVLQDLEACLSDGPEPA
SEFTAADASAFPFLQRVHGEFGFPSECKRLEAWFASASSRPRVRKTIKQD
FWWWW*
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mRNA from alignment at Ecto-sp13_S_contig82099:86..553-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82099.19567.1 ID=mRNA_Ecto-sp13_S_contig82099.19567.1|Name=mRNA_Ecto-sp13_S_contig82099.19567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82099:86..553- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCGTTCTATGACCCCACAGGTAAACCCTCTTGGTTCATGGACCTCAA CCCCAAAGGAGAGGTTCCTGTCCTCGTAGTGGACGGAAAACCCATCGTAG GATCGGAGGAAACCGTAGACTTTCTCATGCCGGGTGAGCTCGGTCCGGAG GCCTTACGATGGCGCTCAATCGTGAATGATCGATTGAAGTCAGCTGGCAA GCGAGCAGTTTTTTCAGGAGGTTCCGAGACGGATCGGAAAAGCCTCAACG TCGTGCTCCAAGACCTGGAGGCATGCCTTTCGGACGGACCGGAACCAGCT AGCGAGTTCACAGCGGCAGATGCTTCGGCCTTCCCGTTCTTGCAGCGCGT TCATGGGGAGTTTGGTTTCCCGAGCGAGTGCAAACGGCTAGAGGCGTGGT TTGCGTCGGCCAGCAGTCGACCGAGGGTTCGAAAGACGATCAAGCAAGAC TTTTGGTGGTGGTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82099:86..553-

>mRNA_Ecto-sp13_S_contig82099.19567.1 ID=mRNA_Ecto-sp13_S_contig82099.19567.1|Name=mRNA_Ecto-sp13_S_contig82099.19567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82099:86..553- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCGTTCTATGACCCCACAGGTAAACCCTCTTGGTTCATGGACCTCAA
CCCCAAAGGAGAGGTTCCTGTCCTCGTAGTGGACGGAAAACCCATCGTAG
GATCGGAGGAAACCGTAGACTTTCTCATGCCGGGTGAGCTCGGTCCGGAG
GCCTTACGATGGCGCTCAATCGTGAATGATCGATTGAAGTCAGCTGGCAA
GCGAGCAGTTTTTTCAGGAGGTTCCGAGACGGATCGGAAAAGCCTCAACG
TCGTGCTCCAAGACCTGGAGGCATGCCTTTCGGACGGACCGGAACCAGCT
AGCGAGTTCACAGCGGCAGATGCTTCGGCCTTCCCGTTCTTGCAGCGCGT
TCATGGGGAGTTTGGTTTCCCGAGCGAGTGCAAACGGCTAGAGGCGTGGT
TTGCGTCGGCCAGCAGTCGACCGAGGGTTCGAAAGACGATCAAGCAAGAC
TTTTGGTGGTGGTGGTAA
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