mRNA_Ecto-sp13_S_contig8206.19564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: D8LHX1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX1_ECTSI) HSP 1 Score: 504 bits (1299), Expect = 1.010e-178 Identity = 250/285 (87.72%), Postives = 259/285 (90.88%), Query Frame = 1
Query: 1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVVFEGDLQGYLAE 855
SGLTFMFVRSLKDAIYGQVWDA+EVRLHSGGGV FYTPVLDERGVPRRFAVKRMPK TIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLL QIVDGTRYVHSKGICHADMSLENTLVNSAHTEAF+IDFGMALQMPTDEA FMSVPDRR+AKRSYCPPETYKGR+PYDGVKVD+FSVGCMGFM+FTGIPPFDYASRLDRKF+KVVF+GDLQGYLA+
Sbjct: 20 SGLTFMFVRSLKDAIYGQVWDAIEVRLHSGGGVDFYTPVLDERGVPRRFAVKRMPKETIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLYQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFMIDFGMALQMPTDEAGQR--------------------FMSVPDRRRAKRSYCPPETYKGRQPYDGVKVDMFSVGCMGFMLFTGIPPFDYASRLDRKFRKVVFQGDLQGYLAD 284
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A6H5L877_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L877_9PHAE) HSP 1 Score: 491 bits (1264), Expect = 2.400e-173 Identity = 246/285 (86.32%), Postives = 254/285 (89.12%), Query Frame = 1
Query: 1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVVFEGDLQGYLAE 855
SGLTFMFVRSLKDAIYGQVWDALEVRLH+GGGV FYT VLDERGVPRRFAVKRM KATIARL PT+QENPMREAAFLTLVQDPGHPNVVGLAAAL+DDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMA QMPT+E FMSVPD R+AKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKF++VVF GDLQGYLA+
Sbjct: 23 SGLTFMFVRSLKDAIYGQVWDALEVRLHNGGGVTFYTSVLDERGVPRRFAVKRMLKATIARLQPTIQENPMREAAFLTLVQDPGHPNVVGLAAALEDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMAQQMPTNEHGQR--------------------FMSVPDGRRAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFRRVVFHGDLQGYLAD 287
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A7S2UUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUC5_9STRA) HSP 1 Score: 129 bits (323), Expect = 2.090e-31 Identity = 93/292 (31.85%), Postives = 142/292 (48.63%), Query Frame = 1
Query: 1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRF-AVKRMPKATIARLLPTMQENPMREAA---FLTLVQDP---------------GHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
SG ++ VR+L++ IYG+V A+ + + G GV Y R + A+K M K I L E+P++E A FL+ + GHPNV+ L +QD+ VY V P+ G E+F +V Q E R+I+ GT Y+HS+G+CH D+SLEN LV+ IID GM L+MP D+ T G + P + KR+Y PE + + P+ G +D ++ G + F+M TG+PPF+ A+ +D +F+ +
Sbjct: 44 SGNVYLLVRTLRECIYGKVKHAIRI-VDVGNGVYEYG---------REYVAIKVMFKRKIQELRGRHNEDPIKEIAAMQFLSTAPEGVEGTKQGEGESTHQGGHPNVLPLLECVQDEDLVYCVMPYCGA----ELFSFVEQ--QGAFLEDRARQYFREILCGTNYLHSRGVCHRDLSLENVLVSQ--NTCIIIDMGMCLRMPVDQ---TTGKH----------------LLINPQGQCGKRNYMSPEIFLNKRPFSGEAIDFWACGIILFIMLTGVPPFETATEVDPRFQMI 298
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A1Z5JDY4_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDY4_FISSO) HSP 1 Score: 129 bits (323), Expect = 5.850e-31 Identity = 89/283 (31.45%), Postives = 139/283 (49.12%), Query Frame = 1
Query: 25 RSLKDAIYGQVWDALEVRLHSG---------GGV---IFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLL-----RQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVV 822
R L+DAIYG VW L +R H G GV PV+ E R AVK + A + R+ + E+P++E A + ++ HP+V+G LQD +Y + P+ G++F V ++ + E + + RQI+ G ++ S+GICH D+SLEN LVN IID GM L++P D+ A V + P K +Y PE + E +DG +D+++ G + ++M TG PP+D ASR D++++ +V
Sbjct: 76 RRLQDAIYGSVWACLVLRRHFGVAADDAARAAGVQPGSPNAPVVWEITEGRHVAVKMVEWARVHRMRGRLLEDPVKEVAAMQMLGSTPHPHVLGTMEVLQDGECLYSIMPYCR---DGDLFGVVVEHAEENGGEIGMAEPVARYWFRQILWGLHHLQSEGICHRDLSLENVLVNG--DVCMIIDMGMCLRVPYDDGA----------GAVTDVHKGVIRRLIKPQGVCGKHNYMSPEVFANAEDFDGFAIDLWAAGVVLYIMLTGFPPYDQASRADKRYELIV 343
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A7S0CIM8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIM8_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.370e-28 Identity = 94/276 (34.06%), Postives = 133/276 (48.19%), Query Frame = 1
Query: 13 FMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGV-PRRFAVKRMPKATIARLLPTMQENPMREAA---FLTLVQD---PGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
F R LK AIYG V +RL PV + P+ AVK M + + +L E+P++E + FL+L +D HPNV+ A LQDD +Y PF GE+F +V + + P A RQI+ G Y+ KG+CH DMSLEN LV+ H A +ID GM L++P G PA + P K +Y PE + P+DG +DV++ G + F+M G+PPFD+AS D +F+ +
Sbjct: 73 FWIGRKLKKAIYGCVRSCTILRLRD--------PVNQTWEITPQMAAVKLMDRNIVNQLRGRHIEDPIKELSCSQFLSLGEDGEPQRHPNVMSSLAVLQDDQYIYFFMPFCN---CGELFGYVERDGRFAEPVARHW--FRQILGGIYYLQKKGVCHRDMSLENLLVDR-HALALVIDMGMCLRVPFGSE---DGSEPAIDVSGNTLRRLI-----SPQTACGKPNYISPEVLSSQVPFDGFAIDVWAAGVILFIMLIGLPPFDWASDDDPRFRMI 326
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: B7G286_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G286_PHATC) HSP 1 Score: 114 bits (285), Expect = 1.920e-25 Identity = 81/282 (28.72%), Postives = 135/282 (47.87%), Query Frame = 1
Query: 25 RSLKDAIYGQVWDALEVRLHSG---------GGV---IFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPA-----PEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
R L+DAIYG VW L +R H G GV P++ E + A+K + A + + + E+P++E A + L+ HPNV+G LQD +Y + P+ G++F V ++ PE RQI+ G ++ ++G+CH D+SLEN LV+ IID GM L++P ++ ++ + P K +Y PE + + +DG +D+++ G + ++M TG PP+D ASR D++F+ +
Sbjct: 101 RRLQDAIYGSVWACLVLRRHHGIAADDAARAAGVEPGSASAPIVWEIS-GQHVAIKMVEWARVHHMRGRLLEDPVKEVAAMQLL-GARHPNVLGSTEVLQDGDFLYSIMPYCR---DGDLFGVVVQYAEDSGGESGMPEPVARFWFRQILWGLHHLQTQGVCHRDLSLENILVDG--DRCMIIDMGMCLRVPYNDPHKPGAVTDVTRGSTRR--------LMRPQGVCGKHNYMSPEVFANTDSFDGFAIDLWAAGVILYIMLTGFPPYDQASRTDQRFELI 367
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A7S2P167_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P167_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.520e-24 Identity = 86/283 (30.39%), Postives = 134/283 (47.35%), Query Frame = 1
Query: 25 RSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRR----------FAVKRMPKATIARLLPTMQENPMREAAFLTLVQDP--GHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVVFEGDL 837
R LK AIYG V + ++L P + RR AVK M I +L +E P++E A + +++ P+V+ + D +Y P+ G GE+F +V + + P P A RQ+V G ++ GICH DMSLEN LV+ A +ID GM L++P + T G++ + + P + K +Y PE + EP+DG VDV++VG + F M G+PP+D+A++ D +FK + +G L
Sbjct: 75 RKLKKAIYGCVRSCMLLKLCQD------MPYQTDPSTGRRNIIWEITGKFVAVKIMDWDLIRKLSGVHKEEPLKEIAAMQSLRNTLDACPHVMPTLDVMTDQQYLYSFMPYCSG---GELFSYVQRDGRFPEPLARFW--FRQLVQGIFHLQKAGICHRDMSLENVLVDG--NNAVVIDLGMCLRIPFSDDD-TGGVTDVTA--------YTLRRLMPPQGQCGKPNYMSPEVLENSEPFDGFGVDVWAVGIILFTMLVGLPPWDWATKEDLRFKMIAIDGQL 335
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A812Z8L4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Z8L4_9DINO) HSP 1 Score: 108 bits (269), Expect = 3.420e-23 Identity = 84/264 (31.82%), Postives = 126/264 (47.73%), Query Frame = 1
Query: 1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMPKATIARLLPT----MQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPF 780
+G ++ V++L+D + G+V A +V L GV+ R + A+K + K+ I +QE+PM+E A L +Q GHP+V+ L ++DD V+ V F GG G+MF VA+ EA Q++ G ++HSKG+ H D+SLEN L+ + IID G+A ++P P SP +P +R K Y PE Y E DG VD + G M F+M G+PP+
Sbjct: 11 AGTSYELVKTLRDCLMGKV-KAAKVWLPGADGVL--------RDTGKVVAIKILLKSCIQSGTTMDCRPVQEDPMQEMAALRYLQ--GHPHVLELLDLMEDDEHVFEVMEFAGG---GDMFSRVAEAPGGHLSEAEAQRYFYQLITGLHFMHSKGVVHRDLSLENALL-AGDDVLKIIDMGLATELPV------PDHSP------------------IPRQRVGKTGYMSPEVYDRSEVQDGRLVDTWCTGIMLFIMLFGVPPY 235
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: B8BR32_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR32_THAPS) HSP 1 Score: 101 bits (251), Expect = 6.980e-22 Identity = 66/207 (31.88%), Postives = 106/207 (51.21%), Query Frame = 1
Query: 202 ENPMRE-AAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
E+P++E AA + D PNV+ +D+ +YL PF SGE+F ++ N + E RQ+++ ++ KGICH D+SLEN LV+ +T+A +ID GM L++P + SP + P + K +Y PE EP+DG VD+++ G + F+M G+PPF++AS D +++ V
Sbjct: 7 EDPLKEVAAMQFMCSDGAKPNVLPCWDLFKDEKYIYLCMPFCS---SGELFGYIERNGR--FDECVAKFWFRQLLNALYHLQKKGICHRDISLENILVDQ-NTKALVIDMGMCLRVPFN--------SPTGCESVYDSSAGTLRKLIYPAGQCGKPNYISPEVLLNNEPFDGFAVDLWAAGIVLFIMLIGLPPFEWASNDDPRYRLV 199
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: B5YMR8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMR8_THAPS) HSP 1 Score: 100 bits (248), Expect = 5.470e-21 Identity = 67/214 (31.31%), Postives = 104/214 (48.60%), Query Frame = 1
Query: 178 ARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTE--AFIIDFGMALQMP----TDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYC------PPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFD 783
A+LL ENP +E A L ++ HPNV+ L A DD +Y V P+ G G + ++ +QN PEA + QI++G ++HS+G+CH D+S EN L I+DFGM L+ P D T ++ M R R++C PE Y+ ++ +DG+ VD++SVG + F++ TG P++
Sbjct: 33 AKLLQRNPENPWKEIAALQMLGSD-HPNVISLLGAFADDLCLYEVMPYYSG---GNLSAYM-HAHQNGLPEAQARGIFLQIINGLHFMHSRGVCHHDISTENILFKEDENSLRCIIVDFGMCLRTPHNYPDDPIGTTDDITDVS--------------MGTQRRLIVSRNHCGKLRFMAPEIYQKKDCFDGLAVDIWSVGVVLFILLTGRQPYE 227 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8206.19564.1 >prot_Ecto-sp13_S_contig8206.19564.1 ID=prot_Ecto-sp13_S_contig8206.19564.1|Name=mRNA_Ecto-sp13_S_contig8206.19564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp MFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMPback to top mRNA from alignment at Ecto-sp13_S_contig8206:3..6292- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8206.19564.1 ID=mRNA_Ecto-sp13_S_contig8206.19564.1|Name=mRNA_Ecto-sp13_S_contig8206.19564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8206:3..6292- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8206:3..6292- >mRNA_Ecto-sp13_S_contig8206.19564.1 ID=mRNA_Ecto-sp13_S_contig8206.19564.1|Name=mRNA_Ecto-sp13_S_contig8206.19564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8206:3..6292- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |