mRNA_Ecto-sp13_S_contig82.19551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82.19551.1
Unique NamemRNA_Ecto-sp13_S_contig82.19551.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 412 bits (1059), Expect = 8.910e-142
Identity = 201/216 (93.06%), Postives = 211/216 (97.69%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPLAC 648
            GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGC+IHDNQVDGGEFGIRVHLGSSNNK++DNVFKNIWNVGMFTY GSDEPWVGGGRP DNEFY+N I+ATETGVKIK+SDNISITNNAFSGTTEIEFN+AID VWSGNSIPTNTCLE+ID++STFTGSSGLPL C
Sbjct:  232 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGGGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIPTNTCLEDIDNNSTFTGSSGLPLEC 447          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 2.350e-75
Identity = 128/216 (59.26%), Postives = 158/216 (73.15%), Query Frame = 1
Query:   13 HDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENI--DDS-----STFTGSSGLP 639
            HD+  Y  +A NKVYNN NHGIIASKRCNNVKIYDN+V DGG DA GIFLHRS D++EVYGN I NM DAGIA+LE+   +IHDN++DG +FGIR+ LGS  N +YDN F +  + G++TY GSDEP V  GRP  N F +N +  +  GVK K+SDNI +TNN F+GT E+EF DA  T WSGNS+P+  C++NI  DD      STF+ SSG+P
Sbjct:  248 HDNHQY--VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLPSGVCIDNITSDDGNSVPPSTFSSSSGVP 461          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 3.480e-64
Identity = 118/214 (55.14%), Postives = 148/214 (69.16%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPL 642
            GFDPHDDSDYL IA N+VYNNVNHGIIASKRCNNVKI++NEV DGGA AAGIFLHRS D + V+ NTITNM DAGIAMLE+   +I+ N ++G ++GIR+ LGS NN++Y N F +I   G++TY GSDEP V  GRP  N    N +E    GVKIK+ D+     N F      EF ++ +T+WSGN I    C+E  D+    +GS  +P+
Sbjct:  672 GFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDG-CIEEDDEFDAASGSDSIPI 884          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 4.860e-56
Identity = 115/227 (50.66%), Postives = 152/227 (66.96%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPW--VGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENI--DDS-----STFTG-SSGLP-LAC 648
            GFDPHDDSDYL              IIASKRCNNV+IY+NEVYDGG  AAGIFLHRS D + V+ N + +M DAG+AMLE+   +I++N+    +FGIR+ LGSS N +++N+F+++   G++TY GSDEP   V  GRP DN F +N I     GVKIK+ D+  IT+N F+GT+E+EF DA +T W GN++P   C++NI  DD      STF   ++GLP L C
Sbjct:  309 GFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQGVCIKNIHSDDGIDIELSTFDRRTAGLPTLEC 523          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 4.790e-53
Identity = 104/193 (53.89%), Postives = 127/193 (65.80%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWV--GGGRPYDNEFYDNAIEAT--ETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGN 567
            GFDPHDDSD L I+ N VY N NHGIIASKRCNNVKI++NEVYDGG DA GIFLHRS D +EV+ N + NM DAG+AM+E+    I+DN      +GIR+ LGS  N I +N+F  I   G++TY GSD+P V    GRP DN F  N IE      GV IK+ D+    +N F+G +  EF D+ DT W  N
Sbjct:  420 GFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDN 612          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.880e-50
Identity = 105/222 (47.30%), Postives = 137/222 (61.71%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVG---GGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAF---SGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPLAC 648
            GFDPHDDSD L IA N V+ N NHGIIASKRCNNVKI+ N VYDGG  A GIFLHRS DD EV+ NT+ +M DAG+A++E+ G  I+DN     ++GIR+ +G+S N + +N F      G++TY G+DEP       G   DN F+ N +E    GVKI+ ++ I+ T+N F   S   E  F D  D VW+ N +P   CL+  D++  F     LP  C
Sbjct:  688 GFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTVEG---GVKIQKAEGIAFTDNKFYEHSSGEEYRFEDCEDVVWTNNLVPDGICLKGDDNTDYFKSYDSLPDTC 906          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.680e-48
Identity = 103/222 (46.40%), Postives = 135/222 (60.81%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVG---GGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAF---SGTTEIEFNDAIDTVWSGNSIPTNTCLENIDDSSTFTGSSGLPLAC 648
            GFDPHDDSD L IA N V+ N NHGIIASKRCNNVKI+ N VYDGG  A GIFLHRS DD EV+GNT+ +M DAG+A++E+ G  IHDN     ++GIR+ +G++ N + +N F      G++TY G+D+P       G   DN F+ N +E    GVKI+ ++ I  T+N F   S   E  F D  D VW+ N +P + CL+   +         LP  C
Sbjct:  627 GFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTVEG---GVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPDDICLKGDKNIDYMKSYDSLPDLC 845          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.580e-43
Identity = 88/199 (44.22%), Postives = 120/199 (60.30%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEP-WVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLE 594
            GFDPHDDSD+L +  N+VY+N  HGIIASKRCN V I  NEVY G + +AGIFL+RS DD+ V GN + + GDAG+AM+E+   ++ DN  +  ++G+R+ +G   N    NV         ++Y G+D P  V  GR  DN F +N I      +KI D+D      N+F     I F+DA  TV SGN+  T+T L+
Sbjct:   49 GFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNTGLTDTKLK 247          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.100e-42
Identity = 88/194 (45.36%), Postives = 122/194 (62.89%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEP-WVGGGRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFS-GTTE---IEFNDAIDTVWSGN 567
            GFDPHDDSD+L I  N+VYNN  HGIIASKRCN V I  NEVY G   +AGIFLHRS DD+ V GN + + GDAG+AMLE+   ++ +N  +  ++G+R+ +G ++N   +N+  N      +TY GSDEP  V  GR  +N F  N+    E  +KIK++D     +N F  G  +   + F+DA+++V  GN
Sbjct:  289 GFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGN 482          
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.140e-41
Identity = 89/190 (46.84%), Postives = 115/190 (60.53%), Query Frame = 1
Query:    1 GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRVHLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGG-GRPYDNEFYDNAIEATETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGN 567
            G+DPHDDSD+L I  N VY+N  HGIIASKRCNNV I  N VY G   +AGIFLHRS D + V  N     GDAG+AMLE+S  EI  N  +G ++GIR+ +G  +N +Y+N   N     ++TY GSD   V   GR  DN F  N +      +K+K+SD   ITNN F     +EF++  + V +GN
Sbjct:   74 GYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGVVEFSNTTENVVTGN 263          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82.19551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR8_ECTSI8.910e-14293.06Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE2.350e-7559.26MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI3.480e-6455.14Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D8LRM4_ECTSI4.860e-5650.66Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7G8D9_ECTSI4.790e-5353.89Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LDB5_ECTSI1.880e-5047.30Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE1.680e-4846.40MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAK0_9PHAE3.580e-4344.22Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D7FXE4_ECTSI1.100e-4245.36Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K1D5_9PHAE1.140e-4146.84MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82contigEcto-sp13_S_contig82:311..3057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score231.5
Seed ortholog evalue3.8e-58
Seed eggNOG ortholog2880.D8LC73
Model size651
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Cds size651
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82.19551.1prot_Ecto-sp13_S_contig82.19551.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82 311..3057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.4730606-CDS-Ecto-sp13_S_contig82:310..3831681464091.4730606-CDS-Ecto-sp13_S_contig82:310..383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 311..383 +
1681464091.487853-CDS-Ecto-sp13_S_contig82:801..9211681464091.487853-CDS-Ecto-sp13_S_contig82:801..921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 802..921 +
1681464091.5019896-CDS-Ecto-sp13_S_contig82:1345..13921681464091.5019896-CDS-Ecto-sp13_S_contig82:1345..1392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 1346..1392 +
1681464091.511383-CDS-Ecto-sp13_S_contig82:1764..18821681464091.511383-CDS-Ecto-sp13_S_contig82:1764..1882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 1765..1882 +
1681464091.5260615-CDS-Ecto-sp13_S_contig82:2448..25891681464091.5260615-CDS-Ecto-sp13_S_contig82:2448..2589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 2449..2589 +
1681464091.5377984-CDS-Ecto-sp13_S_contig82:2905..30571681464091.5377984-CDS-Ecto-sp13_S_contig82:2905..3057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 2906..3057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82.19551.1

>prot_Ecto-sp13_S_contig82.19551.1 ID=prot_Ecto-sp13_S_contig82.19551.1|Name=mRNA_Ecto-sp13_S_contig82.19551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
GFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAA
GIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCEIHDNQVDGGEFGIRV
HLGSSNNKIYDNVFKNIWNVGMFTYYGSDEPWVGGGRPYDNEFYDNAIEA
TETGVKIKDSDNISITNNAFSGTTEIEFNDAIDTVWSGNSIPTNTCLENI
DDSSTFTGSSGLPLAC*
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mRNA from alignment at Ecto-sp13_S_contig82:311..3057+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82.19551.1 ID=mRNA_Ecto-sp13_S_contig82.19551.1|Name=mRNA_Ecto-sp13_S_contig82.19551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:311..3057+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTCGACCCTCACGATGACAGCGACTACCTCATCATCGCTGGCAACAA GGTGTACAACAACGTCAACCATGGTGAGGATGAGGATAGCCTTGCTGCTT GTAAATACCAGTGCAGGGCTAAGTCATAACTTTGCAACAGCGGGAGCTTG TGATCTTTCATCCTTGCAGTTCTAAAACAAGCCATGGATGGACACCCACC GCCGCGCGGGATTTTTCCTGTTGTTCTGTGGGTAGCATAGTGCCTCAGTT CATGTCCACATAATTTACAGCAATGCGTGTCCCGGGATGCGTTTTACCAG CTCGCCAGACACAGGGGCGTATCCCGGGATGCGATTCACCTTCTCGCCAG ACACAGGGAACGTCAGAACTGGTAGTGCCTAAACTCCGTGGACACCTCGC CTCTGCTACGCCTAGAACCCAAGCCGCGATTGCGCGATTAGTTCAGCTGG CGACCGTGTGACCTCATAGTCTACTGAATTCCTATTGACAGGTATCATCG CGTCCAAGAGATGCAACAACGTCAAGATCTACGATAACGAAGTCTACGAC GGCGGCGCCGATGCGGCCGGCATCTTCCTTCACCGCAGCGGAGACGACAG CGAGGTCTACGGTGAGTGAATCTAATCACCACGAGCACTCGCATCCATGC CTTTCTAGTTGTTCGTTGGGGGCGTTTCGGCAAACGCCACCTTTCTTGTT TGATGGTTTCGTCAGCAGTTGAAAGAAAGGGCACCCTCATTGAAGCGTTG CGGTGAGCACCTCGGCTGGGTCCACAGAAAAAACAAGGCTTCTTAGGAGC TTGTGGCCCTTCGGCTTCCTCGGCGGTGCTTGCCTTATCTGTTTCCCGAG GAGAGTTCGGATCCGTCCCGACTTTGCTAGCTCCGCAAGCTCAATGATTT ACATGTATGTTTTTGTTGTCATACCTCCAGATCCAGACTGGAAATGTTGT TTCCTCCTGCAACTACTCCTCCGGTGGTCTTTACTTTTGTCATGACATGA CCGCATCGAATTCGCTCGATCTGGGTTGCTCGCAGGCAACACCATCACCA ACATGGGGGACGCCGGGATAGCTATGTTGGAGGTGTGTACTGTACTGCTG TACTGTGGGCAAGAGGTACTTGTACAATATATCAGTGGCAGTGCTGCTGG TGGTTGATGCCACGATGTACGCTACGGGGCTGCGACGGCGAGGAGGGTGT TGGTTCGCCTACCGAAGGGGTGTGGCGGAAAAACGCCAGCACGTGCAGAA CATCCTTTGGTCACATTTATGATGCCATCTTGCCAATCGATGACCTGAGG ATCCCCACGACGAGCGAACCTTACTGACGTCTGCCTCTTGGTGCCGAGAC AGGCGTCCGCAAACATTGTCAGTGATGCATTATTCTTGAACCGAGATACC CGACTTTCTTCGCCTTTTACTGTGCCCCCATGTGTGTCGTGCTTGTTGGC ACAGACGAGTGGTTGTGAAATTCACGACAACCAGGTCGACGGCGGGGAGT TCGGCATCCGTGTCCACCTGGGGTCGTCCAACAACAAGATCTACGACAAC GTCTTCAAGAACATCTGGAACGGTGAGTGCTTGACACGAGGCGCAATGCG AAGGATACGAACACACACACACGAGACACGAGGGGGTTCTTCTGAACTTT TATGTGCACACGTTCGGGATGTGCAATCTACTGCTTATGGATGTATTCTG GAGCGGCTTAAATGAGATCGCCTGTACTACCGCGACACCATTTGACGACG CCAACCACTGTCGCCATCCAGGCTGCCTCGTTGTTCGCCCCAGCCTGCTG AGGCGGGTCTTATGGTGGTATTATCGCCACTGCTTTGGTTGTTTGCATCA TAGATATTGCGGAATATTGTACTGTAGTTGTTCCTTGACGGCGATGTCTT CCGCACTGGTGCGCACTATGGCTATGGCGGTACTTGTCGGCTCCGCGGCA CGTTTCCTGGCTTTTGTCTTTTTGTCGCTGCTGCTCCTGTGAAAACCCTG CTCGATGGGAATTTCAAGTTTCCACGTGTTCCGTGCACATTCTCGTGCCG GTCCTGACCACCGATTCTCTGTATGTTTCTTTTTCGCTCCCTGCTCTGCG TTGCATTCTCTGCTTTACCCTCACATTTGTCCGTCCAGTCGGCATGTTTA CCTACTATGGGTCCGACGAGCCTTGGGTCGGTGGTGGCCGTCCCTACGAC AACGAATTCTACGACAACGCGATCGAAGCCACCGAGACCGGCGTCAAGAT CAAGGATTCTGACAACATTTCCATCACAAGTACGAGTCCTGTGTCTCCCT TGCCGTCCAAGTTCCGTGTCGTATGCATACTGTATGTAGTGTGTACGTTC TAAGCGAGGCATGCCCTCAAAGTATCATGTTTTTTTAGGGTTTATTGTTC AGGGTTGATTGTTGGCAGCTACAAATTTCCGCCTCGGAAATCATTGAGTC AACAAGTCAGCGGCGTCATGTAGTACCACATGCAATGCAATCAGTGCCTC ATAAGCGACTCACCTGGTCAGCGACGGTTTTCTCTCCTTCTGACGTCCCA TCTTCTTCCCCTTTTTCTCTCCATGTTCGGCGCTACACGCACCAGACAAC GCATTTAGCGGGACGACGGAAATCGAGTTTAATGACGCCATCGACACAGT CTGGTCAGGCAACAGCATTCCTACGAACACATGCCTGGAGAACATTGACG ACAGCAGCACCTTCACGGGCTCCTCGGGCCTCCCCTTGGCTTGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82:311..3057+

>mRNA_Ecto-sp13_S_contig82.19551.1 ID=mRNA_Ecto-sp13_S_contig82.19551.1|Name=mRNA_Ecto-sp13_S_contig82.19551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:311..3057+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTCGACCCTCACGATGACAGCGACTACCTCATCATCGCTGGCAACAA
GGTGTACAACAACGTCAACCATGGTATCATCGCGTCCAAGAGATGCAACA
ACGTCAAGATCTACGATAACGAAGTCTACGACGGCGGCGCCGATGCGGCC
GGCATCTTCCTTCACCGCAGCGGAGACGACAGCGAGGTCTACGGCAACAC
CATCACCAACATGGGGGACGCCGGGATAGCTATGTTGGAGACGAGTGGTT
GTGAAATTCACGACAACCAGGTCGACGGCGGGGAGTTCGGCATCCGTGTC
CACCTGGGGTCGTCCAACAACAAGATCTACGACAACGTCTTCAAGAACAT
CTGGAACGTCGGCATGTTTACCTACTATGGGTCCGACGAGCCTTGGGTCG
GTGGTGGCCGTCCCTACGACAACGAATTCTACGACAACGCGATCGAAGCC
ACCGAGACCGGCGTCAAGATCAAGGATTCTGACAACATTTCCATCACAAA
CAACGCATTTAGCGGGACGACGGAAATCGAGTTTAATGACGCCATCGACA
CAGTCTGGTCAGGCAACAGCATTCCTACGAACACATGCCTGGAGAACATT
GACGACAGCAGCACCTTCACGGGCTCCTCGGGCCTCCCCTTGGCTTGCTA
A
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