mRNA_Ecto-sp13_S_contig8168.19514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8168.19514.1
Unique NamemRNA_Ecto-sp13_S_contig8168.19514.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A6H5K733_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K733_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 6.540e-89
Identity = 153/173 (88.44%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:    1 MVGGKWVMLCVICRSLQHCHSKVVAPGRAETTQQAFAFTSSQLSQRGRRIGGKTPSTKNSVLRPPADARQMKGNQSAVLATRIRAERGMFSSSALEGRRRGGGGEGXXXXX--GGRRSPDYGPARAGQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            MVGGKWV LCV+CRSLQHCHS+V APGRA TT+QA AFTS Q SQRGRRIGGKTPSTKNSVLRPPADARQMKGNQSAVLATRIRA RG FSSSALEGRRRG     XXXXX  GGRRSPDYGPARAGQRRSNVPPGT VEVVQKQHQRTGKLTPGTVS LLTNSGFHPRGIKV
Sbjct:    1 MVGGKWVALCVVCRSLQHCHSRVAAPGRAATTKQALAFTSLQ-SQRGRRIGGKTPSTKNSVLRPPADARQMKGNQSAVLATRIRAGRGTFSSSALEGRRRGXXXXXXXXXXXXGGRRSPDYGPARAGQRRSNVPPGTPVEVVQKQHQRTGKLTPGTVSRLLTNSGFHPRGIKV 172
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: D8LJ50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ50_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.770e-37
Identity = 80/88 (90.91%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:  265 MFSSSALEGRRRGGGGEGXXXXXG-GRRSPDYGPARAGQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKVTRLM 525
            MFSSSALEGRRRGG    XXXXXG GRRSPDYGP RAGQRRSNVPPGTSVEVVQKQHQRTG+LTPGTVS LLTNSGFHPRGIKVTRLM
Sbjct:    1 MFSSSALEGRRRGGXXXXXXXXXGAGRRSPDYGP-RAGQRRSNVPPGTSVEVVQKQHQRTGELTPGTVSRLLTNSGFHPRGIKVTRLM 87
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A835ZKS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKS5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.420e-12
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  382 RSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            RSNVPPGT V VVQKQHQR+G+LT GTV+  LTNSG HPRG KV
Sbjct:    1 RSNVPPGTPVLVVQKQHQRSGELTRGTVARNLTNSGVHPRGQKV 44
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A1F5ZCX1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Gottesmanbacteria bacterium RBG_16_43_7 TaxID=1798373 RepID=A0A1F5ZCX1_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.860e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  382 RSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            RSN+ PG  V VVQKQ QRTG+LT G V+ +LTNS FHPRGIKV
Sbjct:    7 RSNIKPGLPVSVVQKQDQRTGRLTDGVVAEILTNSDFHPRGIKV 50
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A075K8H0_9FIRM (Uncharacterized protein n=1 Tax=Pelosinus sp. UFO1 TaxID=484770 RepID=A0A075K8H0_9FIRM)

HSP 1 Score: 65.1 bits (157), Expect = 4.560e-11
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  373 GQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            G  R N+ PGT V++VQKQ QRTG+LT G V  LLTNS  HPRGIKV
Sbjct:    3 GTERKNIRPGTKVKIVQKQDQRTGRLTEGVVKDLLTNSAIHPRGIKV 49
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A433RM62_9BACL (YwbE family protein n=2 Tax=Cohnella TaxID=329857 RepID=A0A433RM62_9BACL)

HSP 1 Score: 64.7 bits (156), Expect = 7.450e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  373 GQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            GQ R++V PG  V++V KQ QRTGKLT GTV  LLTNS FHP GIKV
Sbjct:    5 GQNRADVKPGLRVDIVLKQDQRTGKLTRGTVKDLLTNSSFHPHGIKV 51
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A1I1AFU2_9CLOT (Uncharacterized protein n=1 Tax=Clostridium frigidicarnis TaxID=84698 RepID=A0A1I1AFU2_9CLOT)

HSP 1 Score: 64.3 bits (155), Expect = 9.030e-11
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  373 GQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            G +R N+ PGT V VVQKQ QR+GKLT G V  +LTNS  HPRGIKV
Sbjct:    3 GTKRENIKPGTKVMVVQKQDQRSGKLTEGVVKRILTNSHIHPRGIKV 49
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A084GNR6_METID (Uncharacterized protein n=1 Tax=Metabacillus indicus TaxID=246786 RepID=A0A084GNR6_METID)

HSP 1 Score: 64.3 bits (155), Expect = 9.260e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  373 GQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            GQ R +V PG SV++V KQ QR+GKLTPG V  +LTNS FHP GIKV
Sbjct:    3 GQNREHVKPGMSVQIVLKQDQRSGKLTPGIVKDILTNSPFHPHGIKV 49
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: A0A0A5G507_9BACI (Uncharacterized protein n=1 Tax=Pontibacillus litoralis JSM 072002 TaxID=1385512 RepID=A0A0A5G507_9BACI)

HSP 1 Score: 64.3 bits (155), Expect = 9.260e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  373 GQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            G +R N+ PG +V+VVQKQ QRTGKLT G VS +LTNS  HP GIKV
Sbjct:    3 GTKRENIKPGMNVKVVQKQDQRTGKLTEGVVSRILTNSSQHPHGIKV 49
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BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Match: UPI0009819DCC (YwbE family protein n=1 Tax=Bacillus dakarensis TaxID=1926278 RepID=UPI0009819DCC)

HSP 1 Score: 63.9 bits (154), Expect = 1.270e-10
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  370 AGQRRSNVPPGTSVEVVQKQHQRTGKLTPGTVSMLLTNSGFHPRGIKV 513
            +G RR N+ PG  V VVQKQ QR+GKLT G V+ LLTNS  HP GIKV
Sbjct:    2 SGTRRENIKPGVKVRVVQKQDQRSGKLTEGVVAKLLTNSATHPHGIKV 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8168.19514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K733_9PHAE6.540e-8988.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ50_ECTSI3.770e-3790.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZKS5_9STRA2.420e-1277.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1F5ZCX1_9BACT3.860e-1170.45Uncharacterized protein n=1 Tax=Candidatus Gottesm... [more]
A0A075K8H0_9FIRM4.560e-1165.96Uncharacterized protein n=1 Tax=Pelosinus sp. UFO1... [more]
A0A433RM62_9BACL7.450e-1168.09YwbE family protein n=2 Tax=Cohnella TaxID=329857 ... [more]
A0A1I1AFU2_9CLOT9.030e-1165.96Uncharacterized protein n=1 Tax=Clostridium frigid... [more]
A0A084GNR6_METID9.260e-1165.96Uncharacterized protein n=1 Tax=Metabacillus indic... [more]
A0A0A5G507_9BACI9.260e-1165.96Uncharacterized protein n=1 Tax=Pontibacillus lito... [more]
UPI0009819DCC1.270e-1064.58YwbE family protein n=1 Tax=Bacillus dakarensis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8168contigEcto-sp13_S_contig8168:1008..3172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score65.9
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog484770.UFO1_0986
Preferred nameywbE
Model size528
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Uncharacterized conserved protein (DUF2196)
EggNOG OGs1VEG3@1239,4H5YF@909932,COG4895@1,COG4895@2
Ec32 ortholog descriptionProtein of unknown function DUF2196
Ec32 orthologEc-02_004770.1
Cds size528
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.5783815-CDS-Ecto-sp13_S_contig8168:1007..13901681464088.5783815-CDS-Ecto-sp13_S_contig8168:1007..1390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8168 1008..1390 +
1681464088.59195-CDS-Ecto-sp13_S_contig8168:3027..31721681464088.59195-CDS-Ecto-sp13_S_contig8168:3027..3172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8168 3028..3172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8168.19514.1prot_Ecto-sp13_S_contig8168.19514.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8168 1008..3172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8168.19514.1

>prot_Ecto-sp13_S_contig8168.19514.1 ID=prot_Ecto-sp13_S_contig8168.19514.1|Name=mRNA_Ecto-sp13_S_contig8168.19514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MVGGKWVMLCVICRSLQHCHSKVVAPGRAETTQQAFAFTSSQLSQRGRRI
GGKTPSTKNSVLRPPADARQMKGNQSAVLATRIRAERGMFSSSALEGRRR
GGGGEGGRGRGGGRRSPDYGPARAGQRRSNVPPGTSVEVVQKQHQRTGKL
TPGTVSMLLTNSGFHPRGIKVTRLM*
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mRNA from alignment at Ecto-sp13_S_contig8168:1008..3172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8168.19514.1 ID=mRNA_Ecto-sp13_S_contig8168.19514.1|Name=mRNA_Ecto-sp13_S_contig8168.19514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8168:1008..3172+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGGGGGAAAGTGGGTGATGTTGTGCGTGATCTGTCGTTCTCTACA
GCATTGCCATTCGAAAGTTGTAGCACCGGGCCGTGCAGAAACAACGCAGC
AAGCATTTGCGTTCACGTCGTCGCAGCTATCCCAGCGGGGCCGCCGGATA
GGAGGCAAGACACCCAGTACCAAAAACTCCGTGCTGCGGCCGCCAGCAGA
TGCGAGACAAATGAAAGGAAACCAAAGCGCAGTGTTGGCGACAAGAATAA
GAGCTGAACGAGGCATGTTTAGCAGCAGTGCCCTCGAAGGACGAAGGAGA
GGAGGAGGAGGAGAAGGAGGGAGGGGTCGCGGTGGAGGGCGACGCTCACC
AGACTATGGACCGGCCCGGGCAGGACAGCGGAGGTGACTACATTACAGTC
AGGACACACAATAGCATAGGTAGTTAATAGAGCACGGACTCTTGCTTAAA
CGAAGTGCCGTATACTCAGATATGCAAAGCGCTTGTCCATAGATTCAAGG
TAGCATAGATTACAACAGCAGTAAGTAGTAGTTCCGAGGTGTTCAAGTGT
TGAACTGCTGCACCGACGGCGCATGCACAGCGGGGAAGGGCGTCGATACG
TTAGTTTCGCACCCTCGGAGTCATCTAATCGAGTGCACAACAAGCAAGCG
TGGTATGGTTCAATGCAGCCAATCCGATTTCCGCATCGGGACCGGTGATA
CCGGACCCTGGCACCGGTCCAAACCTCGCTTGGGTACAATATTGTAAGCT
TGCGTGCTGCCGGCGGGCCACTCTTTGATCTCCAACGGGTCTCAGGTTGA
ACTTTCAATTCGGCGAGGGTATCATGGGGGCGCCACTCCTTTGATGCATG
CGCTGTGGCGGCCCACGCGTAGGAATGAATCAAGTTCTTTGATCGCACCT
GGATTATCATGTAAAGCCCTGTACGAATATGGCCGCTGTTTGTTTATGCA
TTGCCCTGCTCATGCAGGGCTCCCTCCAATCCGAGGTCCGCTTTCCTTTG
AACGTGCGTGCGTGGGTGCGTGGTTGGTTGCGACGAACGAAGTGTTCTCA
AAATCAACTGCACAAGACTACTTGCGTTGAGCGAACAATCGGCGCGTGGC
GTTTTTGCTGAGGCTTTTGTTTGTTGAACGGAATTCGCCGAGACTCTAAC
AAGTACGAATGTGGCGCTGTTTTTTCATTCAAAACTCCCCGGGCCGGCAC
TTTGGTCGTTTGCGATACGCCACACGGCGGTGTACTGCTGTAGCAATGAT
ACTCGGCCGGAGTTCCATACGCCGACTGGCCGGCACTTTGTTCGTTTGCG
ATACTCCGCACGGCAGTGTACTGCTACAAGAATGGCACTCGGCAGGGGTT
CCATACGCCGACTCTTCCTCTGCAAAGATTTATCGGGCTGGACGGGGTTG
ACGTCGATCGTCAAAACCTCACAATACGAGTTTCATTATGCCTCGCTCGG
ACGTTGTCATTTTCAACGTACGGAATCCTGTGGCGTTCAAGCACCAAGCA
AGGGGTGACGAGGAACACACGACACACCGGACCGCGAGTGTGGTGATCGA
AGAGCAACACCGCGCCCACCCCAAAATGCCGACCTATGGCACCTACGCAA
CCACCACCGCACCTGTGCGTAGAATCGACCCAACTCAGGGCGACCTTGCA
ACCATCAGAAGTATGAAGCAAGGTTACGGTTCGGGTGGCTTAGGTCGGCT
AACGAACGCAACGGCGAGGCGAACGCAGCCAACGCGGAGTATCTTCGTCA
GTACGCTTGGCTTCTGGGGGCGCGTTGAATCCTCTTGAGCCTTGCTTCAG
CACCGGCATGGAAGACATACACGCGCCTGTAGCTCTGTGTAGGCTTTGAC
ACTCAACTCCGCAGCATATTTTTTTTCCTTTCGAATCGTAGGTTTTGCAT
GTTCAACTTCCGTCCCACCTCTTTTGGCGAACAACCAATGTGCATGTGTT
TCGCGAAACGGGTAGTATTTATGAATATTGATCACCACTCCCCGGCGTTG
TTTTCTTTTTTGCGCGTCAGGAGTAACGTTCCCCCGGGGACTTCGGTGGA
AGTGGTCCAAAAGCAGCACCAACGCACCGGGAAGCTTACCCCGGGAACTG
TCAGCATGCTCTTGACGAATTCGGGCTTCCACCCCCGTGGAATAAAGGTG
ACCCGCCTTATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8168:1008..3172+

>mRNA_Ecto-sp13_S_contig8168.19514.1 ID=mRNA_Ecto-sp13_S_contig8168.19514.1|Name=mRNA_Ecto-sp13_S_contig8168.19514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8168:1008..3172+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGGGGGAAAGTGGGTGATGTTGTGCGTGATCTGTCGTTCTCTACA
GCATTGCCATTCGAAAGTTGTAGCACCGGGCCGTGCAGAAACAACGCAGC
AAGCATTTGCGTTCACGTCGTCGCAGCTATCCCAGCGGGGCCGCCGGATA
GGAGGCAAGACACCCAGTACCAAAAACTCCGTGCTGCGGCCGCCAGCAGA
TGCGAGACAAATGAAAGGAAACCAAAGCGCAGTGTTGGCGACAAGAATAA
GAGCTGAACGAGGCATGTTTAGCAGCAGTGCCCTCGAAGGACGAAGGAGA
GGAGGAGGAGGAGAAGGAGGGAGGGGTCGCGGTGGAGGGCGACGCTCACC
AGACTATGGACCGGCCCGGGCAGGACAGCGGAGGAGTAACGTTCCCCCGG
GGACTTCGGTGGAAGTGGTCCAAAAGCAGCACCAACGCACCGGGAAGCTT
ACCCCGGGAACTGTCAGCATGCTCTTGACGAATTCGGGCTTCCACCCCCG
TGGAATAAAGGTGACCCGCCTTATGTAG
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