mRNA_Ecto-sp13_S_contig8167.19513.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8167.19513.1
Unique NamemRNA_Ecto-sp13_S_contig8167.19513.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8167.19513.1 vs. uniprot
Match: A0A6H5JK81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK81_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.970e-8
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    7 RSGRTPLHHAASTGRKHMCHYLLLV 81
            RSGRTPLHHAAS GRKHMCHYLLLV
Sbjct: 1428 RSGRTPLHHAASAGRKHMCHYLLLV 1452
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BLAST of mRNA_Ecto-sp13_S_contig8167.19513.1 vs. uniprot
Match: D8LI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI60_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.970e-8
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    7 RSGRTPLHHAASTGRKHMCHYLLLV 81
            RSGRTPLHHAAS GRKHMCHYLLLV
Sbjct: 1152 RSGRTPLHHAASAGRKHMCHYLLLV 1176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8167.19513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK81_9PHAE4.970e-896.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI60_ECTSI4.970e-896.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8167contigEcto-sp13_S_contig8167:6751..6879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.5273638-CDS-Ecto-sp13_S_contig8167:6750..68791681464088.5273638-CDS-Ecto-sp13_S_contig8167:6750..6879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8167 6751..6879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8167.19513.1prot_Ecto-sp13_S_contig8167.19513.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8167 6751..6879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8167.19513.1

>prot_Ecto-sp13_S_contig8167.19513.1 ID=prot_Ecto-sp13_S_contig8167.19513.1|Name=mRNA_Ecto-sp13_S_contig8167.19513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
SQRSGRTPLHHAASTGRKHMCHYLLLVGGDKTARDDEGRTPMD
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mRNA from alignment at Ecto-sp13_S_contig8167:6751..6879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8167.19513.1 ID=mRNA_Ecto-sp13_S_contig8167.19513.1|Name=mRNA_Ecto-sp13_S_contig8167.19513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8167:6751..6879- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCAGCGGTCCGGGAGGACCCCTCTCCACCACGCCGCCTCTACCGGCCG
CAAGCACATGTGCCACTACCTCCTGCTCGTGGGCGGGGACAAGACGGCAA
GGGACGACGAGGGAAGGACTCCGATGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8167:6751..6879-

>mRNA_Ecto-sp13_S_contig8167.19513.1 ID=mRNA_Ecto-sp13_S_contig8167.19513.1|Name=mRNA_Ecto-sp13_S_contig8167.19513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8167:6751..6879- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCAGCGGTCCGGGAGGACCCCTCTCCACCACGCCGCCTCTACCGGCCG
CAAGCACATGTGCCACTACCTCCTGCTCGTGGGCGGGGACAAGACGGCAA
GGGACGACGAGGGAAGGACTCCGATGGAC
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