mRNA_Ecto-sp13_S_contig8167.19512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8167.19512.1
Unique NamemRNA_Ecto-sp13_S_contig8167.19512.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: D8LI59_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI59_ECTSI)

HSP 1 Score: 489 bits (1259), Expect = 1.830e-158
Identity = 229/235 (97.45%), Postives = 231/235 (98.30%), Query Frame = 1 
Query:    1 PVVCGDSNAPPKGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHKGVYHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTRLET 705
            PVVCGDSNAPPKGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGG GEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHKGVYHMVYEGVDKDGVHALGLATSKDGIKWER+SDQPIFERSPPGSG WDAGGVSNPE+VETDGGMWYLYYSGYPEKKEGGEGEG GVFG SAIGVAVAVGDDLTKWTRLET
Sbjct:  230 PVVCGDSNAPPKGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGSGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHKGVYHMVYEGVDKDGVHALGLATSKDGIKWERHSDQPIFERSPPGSGAWDAGGVSNPEIVETDGGMWYLYYSGYPEKKEGGEGEGAGVFGNSAIGVAVAVGDDLTKWTRLET 464
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: A0A7S0H7R1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H7R1_9CRYP)

HSP 1 Score: 207 bits (526), Expect = 6.530e-57
Identity = 104/225 (46.22%), Postives = 140/225 (62.22%), Query Frame = 1 
Query:   37 GVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVM---HKGVYHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTRLE 702
            G+RMRIG+ LS DG++W R+EG+H +GA  DVG  GEWD LF  WP V+ H + +FRMYY + DP T K+ +G+A S DG+ W+K+G +  GG   +FD RG GRR +V     KG Y M  EGV+KDG H++GL TS DG+KWER SD+P+F+ S    G WDA  V  P +V  + G   LYYS    +            G   IG+A++ G D T++TR +
Sbjct:   23 GLRMRIGLCLSFDGVHWTRLEGDHHSGAVFDVGQKGEWDHLFNAWPTVVQHADNDFRMYYSSFDPQTSKYSIGLARSTDGIKWKKEGMIISGGQGDAFDARGCGRRHVVEDPEQKG-YLMFVEGVNKDGKHSIGLYTSSDGLKWERSSDKPVFDGSNE-EGAWDAENVGCPWVVPMEDGSCRLYYSSSSRES-----------GSHGIGMALSDGQDWTRFTRYD 234
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: A0A7R9U2K4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2K4_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.120e-55
Identity = 112/228 (49.12%), Postives = 144/228 (63.16%), Query Frame = 1 
Query:   34 KGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHM--EKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDG-GPEGSFDERGAGRRRIVMH-KGVYHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGY--PEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTRL 699
            KG +M+IGVA+SQDG+NW R+EG+ P G  + VG  G+WD L+VGWP V+  +  +KEF MYY + D   KK  +GMA   DG+ W KKG +F G G  G+FDE G  RR I+    G Y M YEGV KDGVH++G ATS+DGI W    D+P+FE S   S  WDAGGVS+P +V        +YY GY  P+++EGG G+      K AIGVAV +  D   W R+
Sbjct:  204 KGAKMKIGVAVSQDGINWSRIEGDGPNGEALPVGEEGDWDSLYVGWPQVLPCVTSDKEFSMYYCSFDAIEKKHCIGMAVGTDGVKWTKKGKIFSGTGAPGAFDEGGVSRRHIIRGISGGYRMWYEGVSKDGVHSIGYATSEDGIAWTPSGDKPVFEPSAD-SEAWDAGGVSSPRIVRMGDESLRMYYVGYASPDREEGGNGKPK----KGAIGVAVNLSGDGVTWERV 426
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: A0A6U6BTW8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BTW8_GUITH)

HSP 1 Score: 203 bits (517), Expect = 9.300e-53
Identity = 102/225 (45.33%), Postives = 137/225 (60.89%), Query Frame = 1 
Query:   34 KGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHKGV--YHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTRLE 702
            KG+RMRIG+ LS DG++W R+EG+H +GA  DVG  GEWD LF  WP V+ H + +FRMYY + DP T K+ +G+A S DG+ W+K+G V +GG   +FD RG GRR +V       Y M  EGVD DG H++GL  S DG+KWER SD+P+ + S    G WDA  V  P +V  + G   LYYS    +            G   IG+A++ G D T++TR +
Sbjct:  272 KGLRMRIGLCLSFDGVHWTRLEGDHHSGAVFDVGQKGEWDHLFNAWPTVVQHSDNDFRMYYSSFDPQTSKYSIGLARSTDGIKWKKEGMVINGGGGDAFDARGCGRRHVVEDPETAGYLMFVEGVDMDGRHSIGLYKSSDGLKWERSSDKPVLQGSQE-EGAWDAENVGCPWVVPMEDGSCRLYYSSSSRES-----------GSHGIGMALSDGKDWTRFTRFD 484
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: L1JEP0_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JEP0_GUITC)

HSP 1 Score: 197 bits (501), Expect = 8.740e-52
Identity = 102/230 (44.35%), Postives = 137/230 (59.57%), Query Frame = 1 
Query:   34 KGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEK-----KGPVFDGGPEGSFDERGAGRRRIVMHKGV--YHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTRLE 702
            KG+RMRIG+ LS DG++W R+EG+H +GA  DVG  GEWD LF  WP V+ H + +FRMYY + DP T K+ +G+A S DG+ W+K     +G V +GG   +FD RG GRR +V       Y M  EGVD DG H++GL  S DG+KWER SD+P+ + S    G WDA  V  P +V  + G   LYYS    +            G   IG+A++ G D T++TR +
Sbjct:  158 KGLRMRIGLCLSFDGVHWTRLEGDHHSGAVFDVGQKGEWDHLFNAWPTVVQHSDNDFRMYYSSFDPQTSKYSIGLARSTDGIKWKKARGAAEGMVINGGGGDAFDARGCGRRHVVEDPETAGYLMFVEGVDMDGRHSIGLYKSSDGLKWERSSDKPVLQGSQE-EGAWDAENVGCPWVVPMEDGSCRLYYSSSSRES-----------GSHGIGMALSDGKDWTRFTRFD 375
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: A0A7S2C6R2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C6R2_9STRA)

HSP 1 Score: 189 bits (481), Expect = 3.160e-48
Identity = 108/245 (44.08%), Postives = 146/245 (59.59%), Query Frame = 1 
Query:   16 DSNAPP-KGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHM-EKEFRMYYHALDPDTK----KFRVGMATSQDGLAWEKKGPVFDGGPEG------SFDERGAGRRRIV-MHKG--VYHMVYEGVDKDGVHALGLATSKDGIKWERYSD-QPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTRLE 702
            D+ AP   G+ +RIGVA+SQDG+NW RVEGEH +GA +DVG  GE+D L VGWP V+++  +  FRMYY  + PD +    ++ +G+A S DG  W K G +    PEG      +FD RG  RR +V +  G   Y+M YEG+   G HA+GLATS +GI+WER +  QP+ E S  GSG WDA  V +P +V    G   +YY+G  E             G+ +IG A    DDL+KWTR++
Sbjct:  218 DAEAPTLTGMEVRIGVAISQDGINWSRVEGEHASGAVLDVGKEGEFDHLMVGWPQVVDYRGDSSFRMYYQTMMPDPELGGTRYAIGIAESADGFKWTKLGQLKLTNPEGGASEENAFDARGISRRHVVKLENGDDTYYMFYEGISAAGRHAIGLATSTNGIQWERANGGQPVLEPSASGSGQWDAKAVGSPHIVAMPNGGLRMYYAGVTEGT-----------GECSIGCADGHVDDLSKWTRVD 451
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: A0A6I9SXG6_SESIN (uncharacterized protein LOC105159987 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SXG6_SESIN)

HSP 1 Score: 189 bits (480), Expect = 3.830e-48
Identity = 102/233 (43.78%), Postives = 141/233 (60.52%), Query Frame = 1 
Query:   13 GDSNAPPKGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHK--GVYHMVYEGVDKDGVHALGLATSKDGIK-WERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGM--WYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTR 696
            GDS+   K ++   G+A+SQDG +W R+EGEH +GA +DVG  GEWD LF+  P V+ H   + RMYYH+ D +   F +G+A S+DG+ W K G +  GG  G+FDE G    RI+ +K  G Y MVYEGVD DG  ++G+A S DG++ W+R  D P+F++S    GGWD  GV +P LV+ DG    W LYY G             G  G+S IG+AV+ G ++  + R
Sbjct:  241 GDSS---KILKSLPGLAMSQDGRHWARIEGEHHSGALLDVGSDGEWDSLFIASPQVVFHGTGDLRMYYHSFDVENGHFAIGVARSRDGMRWVKLGKILSGGTRGAFDECGIVNARILRNKKDGEYLMVYEGVDGDGKRSIGVAVSSDGLQHWKRVQDSPVFKQSE--DGGWDCDGVGSPCLVQMDGDTEEWRLYYRGI------------GKGGRSGIGLAVSQGSEVNNFQR 456
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: A0A7S2STH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH5_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.030e-47
Identity = 97/232 (41.81%), Postives = 135/232 (58.19%), Query Frame = 1 
Query:   19 SNAPPKGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTK--KFRVGMATSQDGLAWEKKGPV-FDGGPEGSFDERGAGRRRIVM---HKGVYHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTR 696
            S+A   G+ +RIG+A+SQDGL+W R+EGEH   A +DVG  G++D L VGWP V+N  +KEFRMYY +    +   +F +G A SQDG  W+K G V F+  P   FDE+G  RR ++    ++  + MVYEG+D +G H++G+ATS +G+ W+  S +P+F  S      WDA  V +P +VE  GG   L+Y G              + G  AIG A     DLT W R
Sbjct:    1 SDAEVVGMSLRIGMAVSQDGLHWSRLEGEHANNAVLDVGKEGDFDELLVGWPQVVNFNDKEFRMYYQSSGGASSDDRFTIGWAKSQDGFKWDKMGKVNFERAPGSKFDEKGISRRHVIQLESNEDAFTMVYEGIDANGRHSIGIATSTNGVDWKSLSAEPVFAPSDDADA-WDAKAVGSPHVVELPGGELRLFYVGTA------------MDGTCAIGSATGNVADLTSWER 219
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: UPI00188264F8 (glycosyl hydrolase n=1 Tax=Nostoc sp. LEGE 06077 TaxID=915325 RepID=UPI00188264F8)

HSP 1 Score: 182 bits (463), Expect = 4.770e-47
Identity = 99/225 (44.00%), Postives = 138/225 (61.33%), Query Frame = 1 
Query:   34 KGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHKGVYHMVYEGVDKDGVHALGLATSKDGIKWERYS-DQP---IFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKSAIGVAVAVGDDLTKWTR 696
            KG+ MR G A+S+DG+NW R+EG +  GA + +G PGE+D LF  WP V+   +  ++MYYH L+PD K F VG+A S DGL WEK G +   G  GSFD+RG G R ++  +G Y M YEGV+  G H++GLA S DGI W++ + DQP   +F  +   SG WDA  +  P +V  D G +++YY G     EGG  E   +  +  IG+AV+ G +  +W R
Sbjct:  133 KGLNMRPGCAISRDGINWVRLEGNYQ-GAFLGLGKPGEFDALFCAWPQVLPDDDGTWKMYYHTLNPD-KGFLVGLAVSTDGLHWEKVGQILAAGESGSFDDRGIGTRHVLKIEGQYVMFYEGVNTSGYHSIGLAISDDGIHWQKETGDQPGGSVFSHAQKNSGLWDARAIGTPCIVPMDDGSFWMYYIG---ANEGGYDE---LSSQHQIGLAVSDGTNFRQWHR 349
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BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Match: E1ZH48_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZH48_CHLVA)

HSP 1 Score: 183 bits (465), Expect = 1.080e-46
Identity = 95/201 (47.26%), Postives = 123/201 (61.19%), Query Frame = 1 
Query:   16 DSNAPPKGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGP-EGSFDERGAGRRRIV--MHKGVYHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERSPPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEG 609
            D     +G+R+R G+A+SQDG NW R+E EH TGA  DVG  GEWD LFVG P V+    ++ RMYYH+ D   +++ VG+ATS DG  W+K GP+F+GG  E  FD RGA  R +V  +    Y M YE V  DG  ++GLA S+DG++  R   QP+ E S   +G WD GGV  P  V   GG W LYYSG  ++  G
Sbjct:  180 DEGGDLEGLRLRPGLAMSQDGRNWARIEAEHHTGALFDVGKAGEWDELFVGGPQVVAAGPRDMRMYYHSYDRARQRYVVGLATSPDGFKWKKMGPIFEGGSSEADFDARGAATRCVVRDIDTKQYFMFYEAVGADGGRSIGLAVSQDGLRGWRRCPQPVLEGSGV-AGAWDEGGVGCPWAVSMAGGKWRLYYSGRAQRGAG 379
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8167.19512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI59_ECTSI1.830e-15897.45Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S0H7R1_9CRYP6.530e-5746.22Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7R9U2K4_9STRA2.120e-5549.12Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U6BTW8_GUITH9.300e-5345.33Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
L1JEP0_GUITC8.740e-5244.35Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2C6R2_9STRA3.160e-4844.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6I9SXG6_SESIN3.830e-4843.78uncharacterized protein LOC105159987 n=1 Tax=Sesam... [more]
A0A7S2STH5_9STRA1.030e-4741.81Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI00188264F84.770e-4744.00glycosyl hydrolase n=1 Tax=Nostoc sp. LEGE 06077 T... [more]
E1ZH48_CHLVA1.080e-4647.26Uncharacterized protein n=1 Tax=Chlorella variabil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8167contigEcto-sp13_S_contig8167:137..5709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score459.1
Seed ortholog evalue1.1e-126
Seed eggNOG ortholog2880.D8LI59
Preferred nameSMYD5
Model size3534
KEGG koko:K01369,ko:K17770
KEGG TC3.A.8.1
KEGG Pathwayko04142,ko04612,map04142,map04612
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008757,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0031974,GO:0031981,GO:0032259,GO:0034968,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Exons5
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
EC3.4.22.34
Cds size663
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko02000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8167.19512.1prot_Ecto-sp13_S_contig8167.19512.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8167 182..2883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.4147332-UTR-Ecto-sp13_S_contig8167:136..1811681464088.4147332-UTR-Ecto-sp13_S_contig8167:136..181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8167 137..181 +
1681464088.4808168-UTR-Ecto-sp13_S_contig8167:2883..57091681464088.4808168-UTR-Ecto-sp13_S_contig8167:2883..5709Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8167 2884..5709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.4272535-CDS-Ecto-sp13_S_contig8167:181..2221681464088.4272535-CDS-Ecto-sp13_S_contig8167:181..222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8167 182..222 +
1681464088.4416802-CDS-Ecto-sp13_S_contig8167:1266..14331681464088.4416802-CDS-Ecto-sp13_S_contig8167:1266..1433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8167 1267..1433 +
1681464088.451309-CDS-Ecto-sp13_S_contig8167:1875..19961681464088.451309-CDS-Ecto-sp13_S_contig8167:1875..1996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8167 1876..1996 +
1681464088.4606817-CDS-Ecto-sp13_S_contig8167:2255..23871681464088.4606817-CDS-Ecto-sp13_S_contig8167:2255..2387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8167 2256..2387 +
1681464088.4704695-CDS-Ecto-sp13_S_contig8167:2681..28831681464088.4704695-CDS-Ecto-sp13_S_contig8167:2681..2883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8167 2682..2883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8167.19512.1

>prot_Ecto-sp13_S_contig8167.19512.1 ID=prot_Ecto-sp13_S_contig8167.19512.1|Name=mRNA_Ecto-sp13_S_contig8167.19512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MRIGVALSQDGLNWCRVEGEHPTGACVDVGGPGEWDRLFVGWPVVINHME
KEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGA
GRRRIVMHKGVYHMVYEGVDKDGVHALGLATSKDGIKWERYSDQPIFERS
PPGSGGWDAGGVSNPELVETDGGMWYLYYSGYPEKKEGGEGEGGGVFGKS
AIGVAVAVGDDLTKWTRLET*
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mRNA from alignment at Ecto-sp13_S_contig8167:137..5709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8167.19512.1 ID=mRNA_Ecto-sp13_S_contig8167.19512.1|Name=mRNA_Ecto-sp13_S_contig8167.19512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8167:137..5709+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTCGTCTGCGGGGACAGCAACGCGCCTCCCAAGGGAGTTCGAATGCG
TATCGGCGTCGCCCTCTCGCAGGACGGGCTCAACTGGTGAGTTATTTCTT
CGAGATGGTGTTCTTTTTCTTTCAACAACACAACGAATTGCCATTTTTTG
CGATCCGAGAAACAATCGAAACCCCGGGGTGCTACTTGTATGCACGCGGC
CACGAAACCTCGCCTTCGAGAAAAGGGAATTCATAGACACAGACGACAGA
GAGCGAGAAGAGACAGAGTGAAATGTGGGTCGTGGCAAACGGGGGGGGGA
ATCAATATGTGAGAAGCCGTTCCATGCACAATCGACACACAGAGGGCGAA
AAGAGAGGTGTAATTCGTCTCTCAACACCCGCACGGTATTCGACGCAGCT
CGTCTCCCGCACGCAGACATCGGTCATGCCGGGGCTACTTCGCCGTGCGC
TACATCTACCACTTCCATCTCTCTGGGGTTCCTTGCGAACACACCGTGCT
TTTGGCGCCGCGTTAGAAGGAGAGGTGTTGGTTAGCGGAAAGTCTCACGC
GGAATTGAATTGAGATGCAGCTCACGAAGGTGTCTTTGACACCGAAGCTG
TGCCCCGTCTGTGGTAGAAAGGGAGGTACCCGCGATGCCTCGATGTGGCC
CTGGTGCCAATCGCACCACTTTTGGCAGTTCGAAGATGATGCCAAAGATC
TGTGAAGAAGAAGACGGAACGAGATAGAGCCTATGTTTTACCCAACATAC
AATCCGAGGGACGTTTGAGCCACTGCGCCTAGTGTACACACTCATGCCAG
ACAAAACGAGATAACCCTCTTTTTTACCACAGTCCTAGGTCCGATATAAG
AGGGTCAAAATCAGTTGTCACCGACTTGGCCCTCTAAGCATTGTTGGGTA
CCCTCTTATTCGGGTGTGAGAGGGGGCTCCGATGTAACAGAGTCGAGGGC
CTTTGTTACACCACCCTATTCTATCGGAGCCACGACTGTACACACAAAAT
ACCCCAGGGATGCTTGAGCCACGGTGGCTCCTGCTGTACACACTCATCCC
CACTACGACCGCTGCTGCCAACAAGTAACAGCAGCACCGCACCACCTTGC
TCTGCTCCGGCCGCTCTCGTGTCCGTCCAGGTGCCGCGTCGAGGGAGAGC
ACCCCACGGGGGCTTGCGTCGACGTCGGGGGCCCCGGCGAATGGGACAGG
CTGTTCGTGGGGTGGCCCGTGGTGATCAACCACATGGAGAAGGAGTTCCG
CATGTACTACCACGCCCTCGACCCTGACACCAAGAAGTTCAGGGTCGGTG
AGTGACTTGTGCGAGTACGGGGTAGGAGGGGGGGGGTAGTTTCTGCGCGT
GCCCCCCTGCGTTCGTGATCACGGCGCGCCAAGTGAATGAATAGATGACG
GATGATTGGTGGGGTTGTGCGGGTGTTGTTCCTCGAAATGGCGCCTTGCG
AAGTGCCGTTGTCTTAGGCTAGGCGCGCCTACGCTGTCCACAATACGACA
GCGCGAATCTGAAACCTTACCTTTTGGTGCTCTCTGTTTGTTGTACGCGA
AGGCTACTTGGGTCAAGCATCATTCCACTTTGGTGGTGTGTTCTGTCGTT
GTATCTGTCTGTCGGCTGCGGCTCGTCCGTACAGCAATACCTGGAACATT
TTCTGTCGACATCATGTGCTCTCTTTTCTGTCCCGTGACACTCTTGTCTT
CAACCCCCGTCCTCCCCCCGTTTCCCCCCACACAACAAGGAATGGCGACC
TCTCAAGACGGGCTGGCTTGGGAGAAGAAGGGGCCGGTCTTCGACGGGGG
CCCGGAAGGCTCTTTCGACGAGCGGGGGGCGGGGCGCCGACGAATCGTGA
TGCACAAGGGGTGAGAAACCGTCTTCCGAACGAACCTTCGGATCAGTACT
CCGTCCTGAAAGGGTGTCGGAACGATACAACAGCAGTGAGTGTACTGCTG
CACACAAGCGTGAAGTCTGCTACAAGTATGACAGCGTTTGGCGTGTAGGC
GGGACCGTTGATGGTGGCATTTCGATGATGAACGATGTGCGTTTTCACGC
CCAAAACTAGACTCTTGACAAATCGGGGGTTCCGGATACACCGTGGGTCT
TGGCCGCGCGCGTGTCCAGGGTGTACCACATGGTGTACGAAGGCGTTGAC
AAGGACGGGGTGCACGCGCTGGGCCTGGCCACCAGCAAGGACGGTATCAA
GTGGGAGCGATACAGCGACCAGCCTATCTTCGAGCGCAGCCCTCCCGGCA
GGTGAGATGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGCGGCT
GCTGTCATCGTGGTGGTATGTTCCGGAATGGGTCGGGGGTTGCGCCTCTG
CTGCCGTAGCCTTTGTTTTTGATGTTTCGTCGACCATTCCCGATTTGCAT
CAATTCTCTACCTTTCTACAACTCGTGTCTATGCGGAGGCCATGACTCCC
AAGGTACGCTAGTATGACATCCTACAACAGCGTCTTTGTTGTGTTTTTTT
CATACCGTTCTTTCCACGCTGCTTTTGTCTCTCTTTTTTGCCCAGTGGCG
GGTGGGATGCCGGAGGCGTGTCCAACCCGGAACTCGTCGAAACCGACGGC
GGGATGTGGTACCTCTATTACTCCGGATACCCCGAGAAAAAAGAAGGCGG
GGAGGGGGAGGGCGGAGGGGTCTTCGGCAAATCGGCCATTGGCGTCGCAG
TGGCAGTTGGTGACGACTTGACCAAGTGGACGAGGCTCGAGACTTGAAGA
GCGTAGATTTCGCTGGTGAAAAAGCACAGTTGCAATGTCAATCGTTTTTG
ATGAGGGAGAGAGAATTGCTTGACCCATGATTGACTTGACTGCGTATGTA
GGCGTTGACAAGAGTTGTAGAGAATTGCTGGACCCATTATATTCCGCTGG
TGAAAAAGCACAGTTGCGATGTCAATCGTTTTTGACGAGGGAAAGAGAAT
TGCTTGACCGATGATTGACTTGACTGCGTATGTAGGCGTTGACAAGGGTT
GTAAAGAATCGCTGGACCCATTTCGCTGAAAGTTCACACGTGCACACCGC
CGGAGGAAGATACGTGAAGGGGGGGGGGTCTCGCGGAGAGGAATAATTCC
GTGTGTGCATTGTACGGGTTATGCCACAGCACAGTAGTGGCTCAAATTGA
GAGTTGAGACTGGCGTCGAGACATGATGGGATGGGGTGTAGTTTTGTTGT
CTCGTTCATGTGGGCCTCATCGTGTGCTTTGAAAGGTTAGACTAGCCACG
AGACAAGACGAGAGGAGACCTCGGTCATGTTGGGACCCCATCGTGTGCCA
GCGAATAACGACGATGCCCGCCTGCGGCGTGAAATCATTACTGTGGAAGG
AGTTCCCGTATTATCGTGGTGCGCGAGGGCGCGAAAATCGTGGCGATTTT
GGATGATGGGCTTGTTTCGGTCCCTTTTCGCGCGCGGTGTCTGGTCTGAT
AGACACGTCGGGCTTGTCTTCCGGGTGGGGGAAGGGATCCCACTGTTGGG
CAATTGGTCGATTGGTTCGTTCCCTTGGAAACGATCGATGCACGACGATT
AACGATTAGTGACGACGTCCGCTCCCTGCTTGGGGAGTCATCATGAGTAT
GACCCAATATTGAACCACGCCGATCGTCGCCGGAACGATGATCATGATGC
GAAGCGTGCACGTGACTGGCGTGTGTGGTGGGGCCACGAGAATCGTAGCG
TCCGCTCTAACGCTCGCACCGAAAGTTCCATGAGGGGCCACGACCAACAG
CTTTAAGTAGAAGGCATAGCAGTGAGTAGCGTTTACACGCTGTTTTGCCG
AGCAACCGGTGTTGTAGCATGTTCCTTACCATGTGGCTGCTGGAGCAATC
TGTAAGAACACGCTCGCTTGTTTTGGGGCAATCTCCATCGTCCGTCTCTT
CTCGAGCATGGAGTGCTACGCGTAGTCTGCTGTTGCTGCAGTTTTCGTCG
GGGGAACGACACTAAATTGAACGGGATCTAATAGCAGCCAAACCTTGGTG
ATCTCACCCAATACTTGCAACGCAATCGACGTTCAGATTAAAACACCACT
TTGATCGATGAAGAATACTTGGCAACAAATGGCATCTACACAGATGGAAA
CTAATGTGATCTAAGCATGTGGTACGCAACAACAGCAAAGCTGATCATTA
CCAAAAAAAACTCCGGTGATTTCCTTCCTCCCATTGTGTGACCCCCGCCT
GGTTCGTCAACCAAAAAGTAAAGACTGGCGCCTGGATTCAACGGCACGGG
AAGGCCCGCCCACATGTACAAGGTACGGATAGCTCCTCCGCTCTACGGAG
GTCTCATAAAAACAATCAACGATTGATGCGTCGGATCGGGTGAAATGACT
GACACAGAGGACAAATACGGGTGGATGCCTACAAGAACACTGACTCGAAG
AAAAATGACGGACGCATCGTACGCGAGTCCTGCAAAAGACGTGCCCGCAG
CACCAGCGCACACCACCTATCTATGCTGAAAAAAACAAAGCGCCATCACC
GAGTGTTTTCTGCCCACGATCCAGTAAACGACCGCTCTTACTTTTGATAC
TACAGTAACTCATGTTCTTGGATTCTGTACCGGATGAATGTACTCAGGCG
ACGTCAGAGAAAAAGTCCATCTCCGGTGGTTGCCTTTACTTTGAAAGTGG
CAAATGGGTCCAGCAGTTGTTTTTCCCCCGAAGTCCCTCAGCAACAAAGC
CATCTTTATTAAGTACAAGACAGTACTGGGTACGAAATAGAGAGGAAAGG
CACGTCAACAATGTACACGAACTCACTTTACACGCTCACTTTGAAAACGA
ACACTTACATTACACAAATGGGCTGTGTGGGCCTCACCACGTGCTATACA
CCGGCTTTATTTCCTTCGAACCATTGAATGAACAAACACGCCTCGGGTGA
TGACAACAAAAAATAAAGAACCCAAAGACTATTGTACTGCGTGACCTTGC
GCGCCACACTACCAACCGCCCTTCGCATCATTTTTTTACTGGACATGTTC
AGAATATACACCCAAAACCAAGCCACCGCCGTAGCATCAGCAAGTTCCAT
CAGACGAAGCCGCCCGCCAATGATACTGCTGCCGCCCTGAGATGAATCAT
AAGAAACACGCAGCCTCCCCACACGCGAAACGGCTCGCGCCCCGTCAGAC
CCCACGATTCAGCCCATTGGTCAGCGGTGATCATGCGTTCGCTGCCTCCG
TCGCTTCACCAACAACAACAATAACAACATGCATCGCGATCCCCCCGCAG
ACAGCCAGCCGCCTGAGAAATAAGAAATACACGACAACACTGGCGCCCCC
CACCCTCTCGTACATCTGACAACCTCTCGTACATCTGACAAAACGTCTCG
TATATCTGACAACCTCTCGTACATCTGACAAAACGTCTCGTATATCTGAC
AACCTCTCGTATATCTGACAACCTCTCGTACATCTGACAACCTTTTGTAT
GTCGGACAGCCTATCGAGCAGTGGTGGTGGCGGCGACGAGGCCGCCGAGC
GAGAGCACGCTAGCGCCCGTGCCGCCCACCATCCCGCCGAGAGACGCCGC
GTCCCAGGACGCCATACTGTCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8167:137..5709+

>mRNA_Ecto-sp13_S_contig8167.19512.1 ID=mRNA_Ecto-sp13_S_contig8167.19512.1|Name=mRNA_Ecto-sp13_S_contig8167.19512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8167:137..5709+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTATCGGCGTCGCCCTCTCGCAGGACGGGCTCAACTGGTGCCGCGT
CGAGGGAGAGCACCCCACGGGGGCTTGCGTCGACGTCGGGGGCCCCGGCG
AATGGGACAGGCTGTTCGTGGGGTGGCCCGTGGTGATCAACCACATGGAG
AAGGAGTTCCGCATGTACTACCACGCCCTCGACCCTGACACCAAGAAGTT
CAGGGTCGGAATGGCGACCTCTCAAGACGGGCTGGCTTGGGAGAAGAAGG
GGCCGGTCTTCGACGGGGGCCCGGAAGGCTCTTTCGACGAGCGGGGGGCG
GGGCGCCGACGAATCGTGATGCACAAGGGGGTGTACCACATGGTGTACGA
AGGCGTTGACAAGGACGGGGTGCACGCGCTGGGCCTGGCCACCAGCAAGG
ACGGTATCAAGTGGGAGCGATACAGCGACCAGCCTATCTTCGAGCGCAGC
CCTCCCGGCAGTGGCGGGTGGGATGCCGGAGGCGTGTCCAACCCGGAACT
CGTCGAAACCGACGGCGGGATGTGGTACCTCTATTACTCCGGATACCCCG
AGAAAAAAGAAGGCGGGGAGGGGGAGGGCGGAGGGGTCTTCGGCAAATCG
GCCATTGGCGTCGCAGTGGCAGTTGGTGACGACTTGACCAAGTGGACGAG
GCTCGAGACTTGA
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