mRNA_Ecto-sp13_S_contig8157.19502.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8157.19502.1
Unique NamemRNA_Ecto-sp13_S_contig8157.19502.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8157.19502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8157contigEcto-sp13_S_contig8157:6029..6546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size362
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001070.1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.7158048-CDS-Ecto-sp13_S_contig8157:6028..61421681464087.7158048-CDS-Ecto-sp13_S_contig8157:6028..6142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8157 6029..6142 -
1681464087.7258801-CDS-Ecto-sp13_S_contig8157:6298..63731681464087.7258801-CDS-Ecto-sp13_S_contig8157:6298..6373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8157 6299..6373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.7356467-UTR-Ecto-sp13_S_contig8157:6373..65461681464087.7356467-UTR-Ecto-sp13_S_contig8157:6373..6546Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8157 6374..6546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8157.19502.1prot_Ecto-sp13_S_contig8157.19502.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8157 6029..6373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8157.19502.1

>prot_Ecto-sp13_S_contig8157.19502.1 ID=prot_Ecto-sp13_S_contig8157.19502.1|Name=mRNA_Ecto-sp13_S_contig8157.19502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MRVQRSSFHTSRRVRVEEIPLLGGGHTGTTRTNYITGVYRCMGEYGGGSQ
GCTSNVLRAVCT*
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mRNA from alignment at Ecto-sp13_S_contig8157:6029..6546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8157.19502.1 ID=mRNA_Ecto-sp13_S_contig8157.19502.1|Name=mRNA_Ecto-sp13_S_contig8157.19502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8157:6029..6546- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGCCTGTGTACTGAGCGGTCGAGCAGGGACGGCGCTTGGCAGGA
GCAGCGACGGGCGACTGGGGGGCGACGGGACATAGTGTACGGGCCTGTCG
GGTGTGCTGGGCCCCTTGGGAGATTGCCGTAGATTACGGAGATCGTGCCA
ACAATACCGCGCCGAGATGCAGGATGAGAGTGCAGAGATCATCCTTCCAC
ACATCAAGACGTGTGAGGGTCGAGGAGATACCTCTGTTGGGTGGAGGGGT
GAGTTTTGTTCATGTGCTTTGTTTGCCTTTGATGTTGTACCGCCATGTGG
AATGGTTGCAAGATGATTCAGCAGTGTAGCGTGTTTGTCTAGTACTACCT
TGTACTGTTATTCTGCAGTACGTGCTCGTGTGGCTCTATTTCCTCCTCAT
TTAGCACACAGGAACCACGCGAACGAATTACATCACGGGTGTCTACAGAT
GCATGGGAGAGTATGGCGGTGGCAGCCAGGGGTGTACAAGCAATGTCCTT
AGAGCTGTGTGCACATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8157:6029..6546-

>mRNA_Ecto-sp13_S_contig8157.19502.1 ID=mRNA_Ecto-sp13_S_contig8157.19502.1|Name=mRNA_Ecto-sp13_S_contig8157.19502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8157:6029..6546- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGTGCAGAGATCATCCTTCCACACATCAAGACGTGTGAGGGTCGA
GGAGATACCTCTGTTGGGTGGAGGGCACACAGGAACCACGCGAACGAATT
ACATCACGGGTGTCTACAGATGCATGGGAGAGTATGGCGGTGGCAGCCAG
GGGTGTACAAGCAATGTCCTTAGAGCTGTGTGCACATAA
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