mRNA_Ecto-sp13_S_contig8152.19494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8152.19494.1
Unique NamemRNA_Ecto-sp13_S_contig8152.19494.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A6H5K3X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X2_9PHAE)

HSP 1 Score: 561 bits (1446), Expect = 2.040e-185
Identity = 296/336 (88.10%), Postives = 304/336 (90.48%), Query Frame = 3 
Query:  486 QVFLLKSYSSASAVGKDGGDATGVSEEDRRALDTCRNLLTRRGLESTGAIPCVSPECGNWMVPEGGVQRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLGAMAAQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKATPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQDVASNDPHHVHHIFRVVNGDTEQHAFSPETGASAAASRVAAPP-----DAAAGNTGQRTRLRP 1478
            +VFLLKSYSSASA GKDGG+ TG SEEDRRALDTCRNLLTRRGLESTGAIPC SPECGNWMVPEGG QRVKCASCLVEFCSRCKRSPYHYAAECDEVV LSREWSHWLSEGKA FLGAMAAQ+DQHRALLD XXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCP CGRTIEKLSGCDSMVCGVD HGGNVQNGCGKSFLWS+ARPYRGDRGECK TPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQD+ASNDP HVHHIFR+VNGDTEQ+A SPE+G                 DAAA N GQRTRLRP
Sbjct:  406 RVFLLKSYSSASAGGKDGGETTGASEEDRRALDTCRNLLTRRGLESTGAIPCASPECGNWMVPEGGGQRVKCASCLVEFCSRCKRSPYHYAAECDEVVRLSREWSHWLSEGKAAFLGAMAAQEDQHRALLDXXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPRCGRTIEKLSGCDSMVCGVDTHGGNVQNGCGKSFLWSQARPYRGDRGECKVTPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQDIASNDPRHVHHIFRLVNGDTEQNASSPESGXXXXXXXXXXXXXXXXXDAAARNIGQRTRLRP 741
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: D7FH16_ECTSI (Zinc finger family protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH16_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 1.490e-94
Identity = 161/185 (87.03%), Postives = 162/185 (87.57%), Query Frame = 3 
Query:  486 QVFLLKSYSSASAVGKDGGDATGVSEEDRRALDTCRNLLTRRGLESTGAIPCVSPECGNWMVPEGGVQRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLGAMAAQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMV 1040
            +VFLLKSYSSASA GKDGGD TGVSEEDRRALDTCRNLLTRRGLESTGAIPCVSPECGNWMVPEGG QRVKCASCLVEFC RCKRSPYHYAAECDEVV LSREWSHWLSEGKA FLGAMAAQDDQHRALLDR     XXXXXXXXX         RMEEWKEQRCRCCP CGRTIEKLSGCD M 
Sbjct:  132 RVFLLKSYSSASAGGKDGGDTTGVSEEDRRALDTCRNLLTRRGLESTGAIPCVSPECGNWMVPEGGGQRVKCASCLVEFCRRCKRSPYHYAAECDEVVRLSREWSHWLSEGKAAFLGAMAAQDDQHRALLDRHNRKKXXXXXXXXXAQRVRLEYERMEEWKEQRCRCCPHCGRTIEKLSGCDMMA 316
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A4D9D9T2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9T2_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.060e-53
Identity = 98/237 (41.35%), Postives = 136/237 (57.38%), Query Frame = 3 
Query:  606 RRGLESTGAIPCVSPECGNWMVPEGGV--QRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLGAMAAQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKA-TPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQD 1307
            R+G  + G I C +  C  W+ P   +  QRV C  CL+ FCS CKR PYH+   CDEV+ ++++W  W   G+A +L  MA +D  ++A LD                          E +K  RC+ CP C R IE++ GCD+MVCG +AHGGN+QNGCG++F W+ A  Y  D GE ++  PF E  PA  AR  H I DG  ++CD C   ++GPL  C++CPSF+CC+ CQ+
Sbjct:  334 RKGKIAAGCIECPNGRCSYWVEPTRPLEKQRVDCPKCLMAFCSLCKR-PYHFRCSCDEVMTITKQWLEWQQHGRAPYLTKMAREDSSYQAALDVFKSRRAAHVQEVRTAEQNWGLLVADENYKASRCKRCPHCNRVIERVDGCDTMVCGQNAHGGNIQNGCGQAFDWNDALLYVADIGEKRSIVPFQEVPPAEIARVEHQIMDGTPVKCDVCSAKIMGPLAMCINCPSFSCCIRCQN 569
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A0L0D5A8_THETB (RING-type domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5A8_THETB)

HSP 1 Score: 180 bits (457), Expect = 5.600e-44
Identity = 100/269 (37.17%), Postives = 135/269 (50.19%), Query Frame = 3 
Query:  600 LTRRGLESTGAIPCVSPECGNWMVPE--GGVQRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLGAMAAQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPY--------RGDRGECKATPFTEQEPAAAARSRHFI---ADGIA--LRCDRCHRDVVGPLFRCVHCPSFACCLECQDVASND--PHHVHHIFRVV 1355
            LTR      GAIPC + +C  + +    G  +RV C+ C   FCS CK   YHY  EC +V    R W  W++ G+  +L  +AA D ++   +                           EEWK   CRCCPSCGR I +++GC SMVCG + HGG+ Q+GCG SF W  A  Y        R D      T F  + P  + R+ H +    DG A  LRCD C +D+ GP FRC+ CP+FA CL CQ +A ++  PH  H +F ++
Sbjct:  391 LTRAITSIPGAIPCPTADCTGYEIASMPGEKERVTCSVCRAVFCSLCKNQ-YHYKYECGQVQQAERAWLEWVTSGRRAYLDQLAAADAEYEERISEFNEAREAHQREVEAALQRLRENENDEEWKAANCRCCPSCGRVINRVAGCSSMVCGRNYHGGDNQDGCGASFNWETAPAYVPATSSHIRVD------TEFGTEAPEHSIRTEHILFAGTDGTAVRLRCDLCQQDIFGPEFRCIACPAFAVCLRCQPLAIDEGSPHRTH-VFDII 651
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A6B2L4W0_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4W0_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 4.100e-41
Identity = 101/277 (36.46%), Postives = 142/277 (51.26%), Query Frame = 3 
Query:  540 GDATGVSEEDRRALDTCRNLLTRRGLESTGAIPCVSPECGNWMVPEGGVQRVK------CASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLGAMAAQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKATPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQDVASNDPHHVHHIFRV 1352
            G+   V  E+ +  +     L +R L     + C +P C N++     + RV+      C+ C  EFCS CK+  YHY   C E +  +R+W  W + G+  +   +    ++ +  ++ XXXXXXXXX                E+WKEQ C  CP CGR I+KL GCDSMVCG D HGGN+QNGCGK F WS+++PY+        T   +  P    R+RH    G  + CD C + +VG  F CVHC SF  C  C+       HH +H+FR+
Sbjct:  130 GEVKQVFGENSKEYEDYSEALLKRELAKLPVVGCPTPGCKNFIE----MDRVRVPMHCVCSGCNAEFCSMCKKD-YHYRMNCSESMKYTRDWIEWNTNGRRNYHELL----EKEQKKIEGXXXXXXXXXERNQELQRRYQDLVADEKWKEQNCHACPHCGRPIQKLEGCDSMVCGSDYHGGNIQNGCGKRFNWSQSQPYKSTGLSGPKTVEFQPPPNPKQRTRH----GDWIPCDNCKQQIVGLRFSCVHCRSFNLCENCEFKVD---HHKNHVFRI 390
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A7S2IQC2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IQC2_9DINO)

HSP 1 Score: 165 bits (417), Expect = 2.380e-39
Identity = 92/257 (35.80%), Postives = 126/257 (49.03%), Query Frame = 3 
Query:  606 RRGLESTGAIPCVSPECGNWMVPEGGVQR-VKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLG---AMAAQDDQHRAL---LDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKATPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQDVASNDPHHVHHIFRVV 1355
            R G      + C +  CG  ++   G +R   C       C++C+++PYHY AEC EV  L ++W HWLS G+  F G   A  A + Q RAL   LDR                         E WK   CRCCP C R +++L GCD+MVCG DAHGGN Q GCGK F W+ AR Y+ +  E ++ P    E         + A      C+     ++GP F+C+HC +F  CL C+   S + H   H+FR+V
Sbjct:  147 RNGDSRDIVVRCPNAACGGAVLAAPGERRRYACVCGEAPICTQCRQAPYHYHAECSEVQALRQQWLHWLSGGRDAFRGDLEASGAHEAQTRALREGLDRHAELEAD------------------ERWKAANCRCCPHCSRPVQRLEGCDAMVCGADAHGGNDQQGCGKGFNWNSARAYQVN-VEARSLPEVTAEDVRCQGHGSYHAFATCALCEDDRHGILGPRFQCIHCENFDVCLACEPRLS-ELHEPGHVFRIV 383
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A7S4S3C3_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S3C3_9DINO)

HSP 1 Score: 165 bits (418), Expect = 1.190e-38
Identity = 94/246 (38.21%), Postives = 122/246 (49.59%), Query Frame = 3 
Query:  633 IPCVSPECGNW-MVPEGGVQRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLGAMA---AQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKATPFTEQEPAAAARSR-HFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQDVASNDPHHVHHIFRVV 1355
            I C +P C N  +V +G  +   CA     FC+ C++SPYHY AEC +V  L R W  W+S G+    G      A + Q RAL +                          E+WK + CRCCPSC RT++KLSGCD+MVCG DAHGGN Q GCG+SF WS A  Y+      K    T +E     R   H   D     C    + + GP FRC+HC SF  C EC+   + + H   H+F V+
Sbjct:  288 IRCPNPSCKNAVLVAKGDRRSYSCACGASPFCTHCRQSPYHYHAECSDVQALRRRWLDWVSGGRDAHRGEAEKSEAFEGQARALREGLERHTELEAD---------------EDWKAKHCRCCPSCSRTVQKLSGCDAMVCGADAHGGNDQPGCGQSFSWSSAPRYKAKLESRKLPKITAEEARCRGRDALHAFVD--CSLCGSGGKGIRGPRFRCIHCRSFDACSECETKLA-ELHSPDHVFEVM 515
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BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A812J641_9DINO (Hsdl2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J641_9DINO)

HSP 1 Score: 160 bits (406), Expect = 3.630e-38
Identity = 93/276 (33.70%), Postives = 133/276 (48.19%), Query Frame = 3 
Query:  555 VSEEDRRALDTCRNLLTRRGLESTG-AIPCVSPECGNWMVPEGGVQRVKCASC-LVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATFLGAMAAQDD---QHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKATPFTEQEPAAAARSRHFIADGIA---LRCDRCHRDVVGPLFRCVHCPSFACCLECQDVASNDPHH-VHHIFRVV 1355
            +  E   A+ + R+ L  R +   G  + C +P C + +  E G  R + A C    +C+ C R PYHYA +C +V  L  +W  W+S G++ +    A  ++   Q RAL +                        R EEWK+  CR CP C R ++K+ GC+SMVCG DAHGGN+Q GCG  F W++AR Y+       A P + Q P            G+     RC RC   +VGP FRC+HCP +  C  C   AS    H   H+F+++
Sbjct:  231 ICGEGSEAVSSFRDELLLRAIFVLGDVVHCPNPCCASIISVEPGSGRQRVACCDWPAWCTTC-RQPYHYAVDCCDVQALRDQWLQWVSHGRSVYNQTKAQHEEFERQKRALQEATERHAELK---------------RDEEWKQTNCRECPQCRRVVQKIDGCNSMVCGQDAHGGNLQQGCGHRFQWNKARAYQ-------AAPDSRQLPLLNVADVRVRGSGVRHPFCRCSRCKECIVGPRFRCIHCPDYNLCASCDGDASGAGRHPASHVFQIL 483
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A812RJH2_9DINO (RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RJH2_9DINO)

HSP 1 Score: 158 bits (399), Expect = 4.310e-38
Identity = 91/276 (32.97%), Postives = 133/276 (48.19%), Query Frame = 3 
Query:  555 VSEEDRRALDTCRNLLTRRGLESTG-AIPCVSPECGNWMV--PEGGVQRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATF--LGAMAAQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKATPFTEQEPAAAARSRHFIADGIA---LRCDRCHRDVVGPLFRCVHCPSFACCLECQ-DVASNDPHHVHHIFRVV 1355
            +  ED   + + R  L  + +   G A+ C +P C + +   P  G QRV+C +    +C++C R PYHYA +C +V  L  +W  W+S G+  +    A  A+ ++ +  L+                          EEWK+  CR CP C R ++K+ GC+SMVCG D HGGN Q GCG  F W +AR Y+       A P +   P    +       GI     RC RCH+D+VGP FRC+HCP +  C  C  D      H   H+F+++
Sbjct:  100 ICGEDSVTVLSFREELLLKAVFGLGDAVHCPNPCCRSILSVEPGSGRQRVECCN-WPAWCTQC-RQPYHYAVDCRDVQALRDQWLQWVSHGRTVYNETRAQHAEFERQKQALEEAAARHAELKHD--------------EEWKQANCRECPRCRRVVQKIDGCNSMVCGEDTHGGNRQQGCGHRFQWDKARAYQ-------AAPDSRPLPRLDVQDVKVRGAGIRHPFCRCSRCHQDIVGPRFRCIHCPDYNLCASCDSDATVAQDHPASHVFQIL 352
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Match: A0A813CMB1_9DINO (Hsdl2 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CMB1_9DINO)

HSP 1 Score: 159 bits (401), Expect = 2.860e-37
Identity = 91/274 (33.21%), Postives = 130/274 (47.45%), Query Frame = 3 
Query:  558 SEEDRRALDTCRNLLTRRGLESTGAIPCVSPECGNWMV--PEGGVQRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSEGKATF--LGAMAAQDDQHRALLDRXXXXXXXXXXXXXXXXXXXXXXXRMEEWKEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARPYRGDRGECKATPFTEQEPAAAARSRHFIADGIA---LRCDRCHRDVVGPLFRCVHCPSFACCLECQ-DVASNDPHHVHHIFRVV 1355
            SE+    L     LL +        + C +P C + +   P  G QRV+C +    +C++C R PYHYA +C +V  L  +W  W+S G+A +    A  A+ ++ +  L+                          EEWK+  CR CP C R ++K+ GC+SMVCG D HGGN Q GCG  F W +AR Y+       A P +   P    +       GI     RC RC +D+VGP FRC+HCP +  C  C  D A    H   H+F+++
Sbjct:  210 SEDSVTVLSFREELLLKAVFGLGDVVHCPNPCCRSILSVEPGSGRQRVECCN-WPAWCTQC-RQPYHYAVDCQDVQALRDQWLQWVSHGRAVYNETRAQHAEFERQKQALEEAAARHVELKHD--------------EEWKQANCRECPRCRRVVQKIDGCNSMVCGEDTHGGNRQQGCGHRFQWDKARAYQ-------AAPDSRPLPRLDVQDVKVRGAGIRHPFCRCSRCRQDIVGPRFRCIHCPDYNLCASCDSDAAVAQDHPASHVFQIL 460
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8152.19494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X2_9PHAE2.040e-18588.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH16_ECTSI1.490e-9487.03Zinc finger family protein, putative n=1 Tax=Ectoc... [more]
A0A4D9D9T2_9STRA2.060e-5341.35RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A0L0D5A8_THETB5.600e-4437.17RING-type domain-containing protein n=1 Tax=Thecam... [more]
A0A6B2L4W0_9EUKA4.100e-4136.46Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S2IQC2_9DINO2.380e-3935.80Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S4S3C3_9DINO1.190e-3838.21Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A812J641_9DINO3.630e-3833.70Hsdl2 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812RJH2_9DINO4.310e-3832.97RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A813CMB1_9DINO2.860e-3733.21Hsdl2 protein n=1 Tax=Symbiodinium necroappetens T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8152contigEcto-sp13_S_contig8152:433..7018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score197.6
Seed ortholog evalue7.6e-48
Seed eggNOG ortholog2880.D7FH16
Model size2749
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.In Between Ring fingers
EggNOG OGs2EVYW@1,2SXVI@2759
Cds size816
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8152.19494.1prot_Ecto-sp13_S_contig8152.19494.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8152 1701..6353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.1640353-UTR-Ecto-sp13_S_contig8152:432..17001681464087.1640353-UTR-Ecto-sp13_S_contig8152:432..1700Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8152 433..1700 -
1681464087.2676363-UTR-Ecto-sp13_S_contig8152:6353..70181681464087.2676363-UTR-Ecto-sp13_S_contig8152:6353..7018Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8152 6354..7018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.183885-CDS-Ecto-sp13_S_contig8152:1700..18771681464087.183885-CDS-Ecto-sp13_S_contig8152:1700..1877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8152 1701..1877 -
1681464087.193909-CDS-Ecto-sp13_S_contig8152:2721..28771681464087.193909-CDS-Ecto-sp13_S_contig8152:2721..2877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8152 2722..2877 -
1681464087.203449-CDS-Ecto-sp13_S_contig8152:3320..34241681464087.203449-CDS-Ecto-sp13_S_contig8152:3320..3424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8152 3321..3424 -
1681464087.2183468-CDS-Ecto-sp13_S_contig8152:4008..41291681464087.2183468-CDS-Ecto-sp13_S_contig8152:4008..4129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8152 4009..4129 -
1681464087.2311118-CDS-Ecto-sp13_S_contig8152:4566..47591681464087.2311118-CDS-Ecto-sp13_S_contig8152:4566..4759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8152 4567..4759 -
1681464087.2452354-CDS-Ecto-sp13_S_contig8152:6288..63531681464087.2452354-CDS-Ecto-sp13_S_contig8152:6288..6353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8152 6289..6353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8152.19494.1

>prot_Ecto-sp13_S_contig8152.19494.1 ID=prot_Ecto-sp13_S_contig8152.19494.1|Name=mRNA_Ecto-sp13_S_contig8152.19494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
MVPEGGVQRVKCASCLVEFCSRCKRSPYHYAAECDEVVCLSREWSHWLSE
GKATFLGAMAAQDDQHRALLDRHNRRKEEHDRAVKEAERVRLEYERMEEW
KEQRCRCCPSCGRTIEKLSGCDSMVCGVDAHGGNVQNGCGKSFLWSRARP
YRGDRGECKATPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRC
VHCPSFACCLECQDVASNDPHHVHHIFRVVNGDTEQHAFSPETGASAAAS
RVAAPPDAAAGNTGQRTRLRP*
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mRNA from alignment at Ecto-sp13_S_contig8152:433..7018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8152.19494.1 ID=mRNA_Ecto-sp13_S_contig8152.19494.1|Name=mRNA_Ecto-sp13_S_contig8152.19494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8152:433..7018- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAGAGCGACGGTTTGCCATTGGATTTATCCCGGCTAGATGCATTTTTG
GTCGTTTGCTTTGGCCATCGCGGCACCGAGGCGAAGGAGGGCAGCTCAAA
TACCCGCTCGTGCGTTCTTTTTTTTCTTGATTGTTGGTGATTTGGTCCGG
CCAATGCACGTTCCGCCATATACGTTTGCGCTGCACGTGGTGTCTCTTAA
AAGCTCTCGCTGAAGGTTCTGATCTCTCGAGATCACGCGGGTGGGCGGTG
ACAAGAGTTGACGTCGCTGCGGCGCACGCACACAGGCAGGATTTTTCTCG
TGCATACGCCAGCGCGGAGCCGCTCCGCGCTTCTTCACCAAACGTTTCTC
GAGAGCGGCGTTTCTTCGTCGCATCATAAAGTACCATGCTCCGGCGCCGA
GGACAAAGTACGGAAACACAACCTAGAAGCGCAAGTCAAGCGGTATGGAG
ACTCCGCGCGCACCGCCTACCGTGCCTCGCGCTCGCAGGTGTTTCTCCTG
AAGAGCTACTCTTCCGCCAGCGCCGTCGGCAAGGACGGCGGCGATGCCAC
GGGCGTGTCGGAGGAGGACAGGCGGGCTTTGGACACCTGCCGTAACCTGC
TGACGCGAAGGGGGCTAGAGTCGACCGGGGCGATCCCGTGCGTCAGCCCG
GAGTGCGGCAACTGGATGGTGCCGGAGGGGGGCGTGCAACGCGTCAAGTG
CGCGTCCTGCTTGGTCGAGTTCTGCAGCAGGTGAGAACCAACCAAGACGA
CTTTTGCGTTAACGTGGCGGCGCGTTGACATGTTTGTCTTTGTCGTGCCA
TATTAACAACAAATCGGTCTTTGTTTCTTGTGGGAATACTGCAGCAGCAT
CAAACAATCGCTTCCCCCCACCACGCCCTCGAACGATAGGAAAGTTGGAG
TTTTGGAGAGGGAAAGTAGGATAGGTGAGGGCCGAGCAGGTTTCCGAAAG
AAGAGGGGTTGCGTAGACCACGCGCTCACGGAGGGAGAATCATCCAAGGT
GGAAAGAGAACGGGGAAGCGAAGGTACTACTTTTTCTTGGACGTCTATAA
GGCATGCGCTACAGTGTAGAGAAATGGGCTGTGGAAACAATCGTCCGGAG
AATGTGGAGAGTGCTTAAGAAGATGACAAAGTGTGCGAAATGTGCGGTCG
TGCTAGACGAAGAACTTTCTGAGTTCTTCAACAATCAATAGGGGGTCCCA
CAAGGCTGCACTTCGTCCCCAAAGTTGTTCGAGGTGTTCATCAACGATCT
TTTGAAAGTCCTACAGGCAGGTGGGAAGAGGGTAAAGGTAGGGGAAACTT
CGGTGTCGGGCATGTTTTTAACGGACGATTTAGTTGGGATATCTGATACC
CCTGAGGGACTTCAACTGCAGATTGACGCAGCGAAGGAGCTTTTGCTGAG
AGGTGGAGCTTTTCTGCCAACGTTAAGAAGAGTGCCGTCGTGATGTGCAA
CGAGGACATGGAGAAACCAGTAGTATAGATGGAGGTGGAGGGCCGAGGAG
CGAGAACTTCCATGAACCGATGGATGCAAGGGCGAAGCTGAAGGTCAAAT
TAACGATCAGGGACATTGGCCTTCGATAACGTAAACGAAGATTTCGGGAG
GTAGACGATGAACACGACAAATTCAGATGTGATTGCGGCTCCGAATGCGA
AGACCGGGTTCATGTAGTTAAAGAATGCCCGTTTTATTTGTGCAAGGAGA
GGAACCGTGTACATGACTGAGCTGGAAAAAGTAGAAGGAAGATACAGGGA
GCTGTTTGAGGCATGGAATAACCAGGAGAAGACGGTAGCTGTAATTGAGC
ATAGAAAGTGGGTCAAAAAGGCGGTAGTGATATCGATGGAATAGACTAGG
GAAGCCAATTTTGAGCCACCGTTGGCAAAGTAGGAAGAAACGATCAGGCC
ACCGGTGATCGGTCTTGTGGGAACGATGTTCCGTCCTCTCGAGGACGCGT
GGTCAATGGTGTAACCGCTAGGGCATGCAAAACATAAGAGGACGTCCCTC
CCCCACGCCCTCACGGCACTTCACGACCACCTAGCCGTGTCCGGGGAAAA
CCGGGCTTGCTCCGTCTCGGCTTTGTAGGGATGCGAGAGGTTAATGGTGT
AGCGACTACGGCATGCACGGCTATGAGTACCCCCCCCCTCCTCCCCCTCT
GCGTCCCCTTTTCTCTTTGCTCTCTCCCCTTCCCTCGCCCGCCGTCTCGC
TCCCCCCAAAACCAACCCCCACCCGACCGCGGCGGCGGCGGACAACGCAA
CGAACGCAGGTGCAAGCGCTCTCCGTACCACTACGCGGCCGAGTGCGACG
AGGTCGTCTGCCTGTCCCGGGAGTGGTCCCACTGGCTCTCCGAGGGCAAG
GCGACCTTCCTCGGGGCCATGGCGGCGCAGGACGACCAGCACAGGGCCCT
GCTGGACAGGCACAACAGGAGGAAGGAGGAGCACGACCGCGCGGTGAAGG
AGGTGATGGTGACGACGGTGATGGAAGAAAAGGGCGAGACTTGTTTTTAG
GAGCGGGCAACGGAGGGTGGGCGGTGGTGTTTTTGTATTCCTCCCCCCCT
TGTTAATGTGCTCGTATATTTCTGATGTCTATGAGTAGGTTTGTGGGTGC
CCGCGTTTGTTTGTGCTGCTGTTTGTCTGACAAGGACTGTGGTTGAAGGT
CGACAGTGCCTTGCCACGAGGTAGGTGGTGTGCTGGTGGTAGTTGAACCA
GGTTCGTGCACACGCGCGTACATACGTGCCCGAAAACTCTCGCTCGCCTC
ATCTAGCAACCCTTGCGTAGGGAATTCGCTGTTACATGGTGACCAAGTAA
ACGGGCCTGAACTCTCGCCGCTCACGGTATCTCCCGATACTGTTTTCGCC
TTCCCTTCCTCGTTCCTCCCCGGTCGGTGGTGGCCCCAGGCGGAGCGCGT
GCGGCTTGAGTACGAGCGGATGGAGGAGTGGAAGGAACAGAGGTGCCGGT
GCTGTCCGAGCTGCGGCAGGACCATCGAGAAGCTCAGCGGTTGCGACTCG
ATGGTGTGCGGTGCGTGCCCCTGACTCTGCAGCCTGAGGGTGTTTCTTAT
AGTAGGACATTGGATCAGAGGGGTAGAAGAGAGAGGAGGGAAGGGGGAAC
GGGGACGGATGAAGTCATATACTGTTCACCAGAGGGAGGGGGGGGGGGTT
GGTAGCGACAGGGAAAGAGAGCTGCTAAGAAACAAAAGAGAAACACCGGC
GTGATGGCCATTCCAAAAACGCCGGGGAGGTGGAGGGAAGTTGGCAAAAT
GAAGGCAAAGTAGCTGAGAGAAAATCAAACGGACAAGCAATGGACAAAAA
AATACGGGGGGAATGAGAACGAGAACACAAATAAGCCGCACAACACTCAC
TTGGTGGATACTGTTGGTGTTTTGAGCTGCTCTCCCGGGCGCTCAAGGTA
CTGACGGTTTCGACCAACTACTCTAGAAAAGGCGTGTTCGTATTTCGGCG
ATCGGGGCGGCCACTTTCTACACGTAGACCCAAATCATTTTTTTTTTCTA
TGCATACAACACGGACGGACGCGGTGTGTGTTCCATCATCGGCGAAACTG
AGACCCTGCGCGTTTGTTTTGTTTTCTGTCGTTTCTTTCTCCAGGCGTCG
ACGCTCATGGCGGGAACGTTCAGAATGGCTGCGGCAAGAGCTTCTTGTGG
AGTCGAGCACGGCCCTACCGAGGCGATCGGGGAGAGTGCAAGGCGACGGT
AAGTCCGCCACCGAGCCGAAAGCATGCGTCCCTAGGGCACGGAATCTCCC
CCAAGCAGCATCGTGGAATCGCTCAACGGACCGGCGTCGCCGTTGTGCGC
GGAGGAGTTGTTAACCATTCTTCGATTCACCCATAACCTTGTCAGCGGAG
GCTCACCGCCCCGTGATGTTTTACGCTGGTACGACGAGACAGAAACGCTC
CATTAAACAATGGATTCATTAGGCTTTTTCTACCTCCCAACTCCGAAACT
ATCGTGCTATCCTCCCTGGCGGAGAGACCACCCCTTCCTCTACATCCTTC
TTGCCTTCCCTCCCCGCTCTCATTCGCTTGGTTTTTGGTACAGCCATTCA
CGCAACTTAGCAAATTAAAGATAATTTCCTCCCTTCCCTACCCCCTCTTT
CTGTCCCCCACGCTCACATTCCCGCTTTGTTTTTGGCGCAGCCGTTCACG
GAACAAGAGCCGGCGGCGGCGGCTCGCTCGAGGCACTTCATCGCCGACGG
GATCGCGCTCCGGTGCGACCGCTGCCACCGGGATGTTGTCGGCCCCCTCT
TCCGCTGCGTGCACTGCCCATCGTTCGCCTGCTGCCTGGAGTGCCAGGTC
AGTTTTATTTTTCAGGAGAAGACATATTGATGCCATCGATATTTTTTCCC
CGACTCCGCCCGCCGCCACCGCCTACATGCATGGCGTTTTGTTGGAGCTG
GGGTCGCAAGCACGTAGTGGCACGGCCCGTGACTCACACGTTCAGTTGTT
GCGTAGTGCCGGTCAGGTTGTGTTGTTGGGCATGGTGGCCTTACTACCGT
GCGTTGTATCAGTGGTCATCTGGGTCCGATGGCTGGCAGCTCGCAACCCC
GGGCTCGGTTAGATACCATAGTCGTGTCTTGTCGTGAGTGGAACACGCAC
TGATAAACAAACGTGTGTGTGTTTTGTTATCCAGGGACAACAACGCGCTT
CTTTTTACGGCATAGTCTAAGCCGCGGTGCGACAAAGGCGAATGAATAAC
CAGGGGTCGGGCTAGGCGATGCAGTCACCGCCCGCTCTTAAGACCTCGAT
TCTCAACATTTTTATGTCAAACTTGAGAAATTGAGCAACATTTTTGTGAG
CCCCGTGAAGAAGCGCTACACTAAAACCTGGTGTATATAGCGTCCATTTG
CAGGTAACTAAGGACCCCGGCATCGGTCCAAGTTATAAATAGAGGCCCCT
GAGGGTGTGGGCGCTATGACTGTAACCCTCGGTGTACACCTTATCTGCAG
CGCGTCCCTAGACCTGCGACATACACGAGGTGTGATGGACCTCTATCGTT
TTCGCTGTGCAAGTCGTTCTCTCGCTTGCTTGCGAATGACACCTGACGAC
AACGCGAGTGTGGCGGCTACGCCATCACGGAAACGCTAGTTTTGACGGAC
AGCTCCCCCCCCCCCCCATTCCCGGAAAACCTGCGGTGCAGGACGTCGCC
AGCAACGACCCACACCACGTGCATCACATCTTTCGTGTGGTGAATGGAGA
TACGGAGCAACATGCATTCTCGCCGGAAACAGGAGCATCAGCGGCAGCAT
CAAGAGTAGCTGCACCACCAGACGCAGCAGCAGGGAATACCGGGCAGAGG
ACGCGGCTGCGGCCGTAGTGGTAGCAGAGGGCACGGTATGATTGACATGG
ATGTAAAGCGACCTTTGGTGCGAAAATACCTCTGCGAGTTGGGAAGCTTT
GCATCACGTTGAACTCAATGCACGTGCTTATCACGGGGATGGGTCGCACG
AAGGGAAGTGGGGCGGCACCGCAATAAACACCGCAGCAGTAGAACAGCTC
GTTTGATATGTTGGGTCAATCGCGCTGTGGGAGCTGGGTCTGCGTTCGGT
GTGTCGACGACCGGGGCCACTCATGCCGCCGCCCCTTGACAGCAAGGGCG
GGCCGCTCATTGTTAGGCCGGACCTCGCTTGTCGGCATTGTACATTGTGA
GAGGGTGGGGGAGCGTTGGGGTCTCGCGGAATTATGTACATTCCTCTTGT
GGTTATCTCTCACATGCATATGGTGTGGAGAAGATAATTGGAATGCAAAT
GTCTTGCTGCATGTGGCGAATGAGATCTCGAGTGTTGTCACAGCGTGCGC
TAACTCTTGGTGATGATTTGCTTCACAGCAGTTGGCAAGCAGTGTGTGTT
TTGCAGTTATTGCGTGGAGAGAAAAAAAAAAAAGAAAAGGTATTGAAACC
ATTAATCCCTTGACTACGGGTGGGTCTCTCCTGTGACAAGCTGTTGGCAC
CGATTCGCCGCCGGGCTAGATGGAAATATTTGTGGGATGGATCCCTGGGC
TTGATTCAGTTTGGTGTTAGTATGGTGTTCCTCCGTGGTGTATCTATCCT
GTGTCCGCGGGGTACCATGGGTGCCATGTCGGTCTGTAAGCCCTATTTGT
AGCTGGACGTGGTACTTATTAGCAGAGTAAAAACGCTTATATCATAACAG
TAAGACAAACCGCGTGTGCGAGAGCAGGCACCGAACGCAGCCTGCAGCGC
TCGGACGCCCTCAGCAGCTGTTGTTAGAGCAAGAAGCACGTTCGTATGAT
GACGACACGACGCGATGCGCAGAGGCGATATCATCGTTCCAATGTTTTTT
TTCTGCGGCCCCCTTACTCCGAAACGGTGGCCGTAGTTATACTCTTGGGA
TGGAAACAAGCGGAATAAAGAGATGCGGCACAACAACAACAATGTAGTCT
CCACGTTTATGGAGTGCGTATCACCACAAGCACGACCTGCAAACCTTTGG
TCGTCTCGCCTACACGACTACAACCGCCACCGCCTCTCAACTTTCTCCTA
TGCCGAGTCCCATTTAGTTTCCGCCGGCTGGGAGGCGACACAGATAAGAA
GACCAAGCCGCTCCTAAAATCAATGCAGAGCGTGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8152:433..7018-

>mRNA_Ecto-sp13_S_contig8152.19494.1 ID=mRNA_Ecto-sp13_S_contig8152.19494.1|Name=mRNA_Ecto-sp13_S_contig8152.19494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8152:433..7018- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCCGGAGGGGGGCGTGCAACGCGTCAAGTGCGCGTCCTGCTTGGT
CGAGTTCTGCAGCAGGTGCAAGCGCTCTCCGTACCACTACGCGGCCGAGT
GCGACGAGGTCGTCTGCCTGTCCCGGGAGTGGTCCCACTGGCTCTCCGAG
GGCAAGGCGACCTTCCTCGGGGCCATGGCGGCGCAGGACGACCAGCACAG
GGCCCTGCTGGACAGGCACAACAGGAGGAAGGAGGAGCACGACCGCGCGG
TGAAGGAGGCGGAGCGCGTGCGGCTTGAGTACGAGCGGATGGAGGAGTGG
AAGGAACAGAGGTGCCGGTGCTGTCCGAGCTGCGGCAGGACCATCGAGAA
GCTCAGCGGTTGCGACTCGATGGTGTGCGGCGTCGACGCTCATGGCGGGA
ACGTTCAGAATGGCTGCGGCAAGAGCTTCTTGTGGAGTCGAGCACGGCCC
TACCGAGGCGATCGGGGAGAGTGCAAGGCGACGCCGTTCACGGAACAAGA
GCCGGCGGCGGCGGCTCGCTCGAGGCACTTCATCGCCGACGGGATCGCGC
TCCGGTGCGACCGCTGCCACCGGGATGTTGTCGGCCCCCTCTTCCGCTGC
GTGCACTGCCCATCGTTCGCCTGCTGCCTGGAGTGCCAGGACGTCGCCAG
CAACGACCCACACCACGTGCATCACATCTTTCGTGTGGTGAATGGAGATA
CGGAGCAACATGCATTCTCGCCGGAAACAGGAGCATCAGCGGCAGCATCA
AGAGTAGCTGCACCACCAGACGCAGCAGCAGGGAATACCGGGCAGAGGAC
GCGGCTGCGGCCGTAG
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