mRNA_Ecto-sp13_S_contig8149.19493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE) HSP 1 Score: 1134 bits (2934), Expect = 0.000e+0 Identity = 778/958 (81.21%), Postives = 793/958 (82.78%), Query Frame = 1
Query: 1 SSSNALGSSSRGKDKDDRNRGRDRATRSSXXXXXXXXXXXXXXXXXXXXXXXXXXPREKEKGGRSRKXXXXXXXXXSRDCSSKRRDRDEEKSYDRSYDKERSPRKERSPHHXXXXXXXXXXXXXXXXXXXXXXXXXELRSGSSRADGSDYXXXXXXXGGEPVRGSGSGSRRINSRDTARXXXXXSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATREKPPWRGEGSSS--------------------SSRS-----------RTDASPDSRASGSRGKEPSSSMSRXXSPRSDGSVSPPATVTPPSTPRRSLKDGRSPKKRSPKSSGDYDSERTGSLSTTTPAQDKLAG--KDGRGIGGASGGSTKASSGATPPRGTPSPRLDSSSSGKSTPSRLASSPPKVSSPREAALSGDGESDEDLAGEHVLADDAFSGXXXXXXXXXXXXXXXXXIDARRNHGAPSGGQGATVGTERASNGGAAKPKQQVGEAPAPKRRSPVEAPGSREESASATAQGPMAAXXXXXXXXXGQAKR-PGXXXAKRSQPINAGASSSSSAPKALAGRAGVGESLPSSVSAAGATARPLTPNSTSKRSLGQGGRSGAKDKNRARHGADKKGRASVGGSANRQQGQRAAGGAPQARRTPRAAAVSAAAKIKSTSEGGGGALGVIDGTGSGLFGGGXXGGAFTSYGSEEARPDDSEEEATLDGLVGANRSGPSAHSASSPSAPRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAA 2772
SSSNA GSSS GKDKD R+RGR XXXXXXXXXXXXXXXXXXXXXXXXXX KEKG RSRKXXXXXXXX +RD SSKRRDRDEEKSYDRSYDKERSPR H XXXXXXXXXXXXXX AD SDY GGEPVRGSGSGSRR NSRDTAR SD XXXXXXXXXXXXXXXXXXXXXXXXX +ATREKPPW GEGS S S RS R DASPDSR SGSRGK PSSSMSR SPRSDGSVSPPATVTPPSTPRRSLKDGRSPKKRSPKSSGDYDSERTGSLSTT PAQDKLAG +D RGIGGASGG TKASSGAT PRGTPSPRLDSSS+GKS PSRLA SPPKVSSPR AALSG+ ESDEDLAGE VLADDAFSG IDARRN+GAPSGG+GATVGTERASNG AAKPKQQVG+APAPKRRSPVEAPGSREESASATAQGP A XXXXXXXXX PGX AKRSQP++ GA SSS APKALAGRAGVGESLPSSVSAAGATARPLTPNSTSKRS GQGGRSG KDKNRAR G DKK RAS+GG A+RQQGQRA GGAPQARRTPRA IKSTSEG GGALGVIDGTGSG+FGG XX GAFTSYGSEEARPDDSEEEATLDGLVGANRSGPSAH ASS SAPRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEF+HDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVV KLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAA
Sbjct: 8 SSSNAPGSSSGGKDKDCRDRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEKGDRSRKXXXXXXXXDNRDSSSKRRDRDEEKSYDRSYDKERSPRXXXXXXHRDRSVSRQAKRXXXXXXXXXXXXXXXXXXXXXXADDSDYDDSDDDGGGEPVRGSGSGSRRSNSRDTARSSAGKSDKHRPSXXXXXXXXXXXXXXXXXXXXXXXXXRGSEATREKPPWSGEGSRSXXXXXXXXXXXXXXXXGGSRSKRSPPLAEEKALTGRADASPDSRVSGSRGKGPSSSMSRSSSPRSDGSVSPPATVTPPSTPRRSLKDGRSPKKRSPKSSGDYDSERTGSLSTTAPAQDKLAGAGEDERGIGGASGGLTKASSGATSPRGTPSPRLDSSSAGKSAPSRLAPSPPKVSSPRAAALSGNDESDEDLAGERVLADDAFSGGGGFATGADPAPPAAAAIDARRNYGAPSGGEGATVGTERASNGDAAKPKQQVGQAPAPKRRSPVEAPGSREESASATAQGPTAXXXXXXXXXXXXXXXXPGXGGAKRSQPVSTGAFSSSPAPKALAGRAGVGESLPSSVSAAGATARPLTPNSTSKRSPGQGGRSGGKDKNRARQGVDKKSRASIGGGASRQQGQRAVGGAPQARRTPRAXXXXXXXXIKSTSEGXGGALGVIDGTGSGVFGGXXXXGAFTSYGSEEARPDDSEEEATLDGLVGANRSGPSAHLASSTSAPRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFLHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVFKLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAA 965
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI) HSP 1 Score: 818 bits (2112), Expect = 2.470e-266 Identity = 486/653 (74.43%), Postives = 491/653 (75.19%), Query Frame = 1
Query: 892 RSPKSSGDYDSERTGSLSTTTPAQDKLAGKDGRGIGGASGGSTKASSGATPPRGTPSPRLDSSSSGKSTPSRLASSPPKVSSPREAALSGDGESDEDLAGEHVLADDAFSGXXXXXXXXXXXXXXXXXIDARRNHGAPSGGQGATVGTERASNGGAAKPKQQVGEAPAPKRRSPVEAPGSREESASATAQGPMAAXXXXXXXXXGQAKRPGXXXAKRSQPINAGASSSSSAPKALAGRAGVGESLPSSVSAAGATARPLTPNSTSKRSLGQGGRSGAKDKNRARHGADKKGRASVGGSANRQQGQRAAGGAPQARRTPRAAAVSAAAKIKSTSEGGGGALGVIDGTGSGLFGGGXXGG--AFTSYGSEEARPDDSEEEATLDGLVGANRSGPSAHSASSPSAPRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQ------------------------LLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAA 2772
RSPKSSGDYDSERTGSLSTT PAQDKLAG+DGRGIGGASGGSTKASSGATPPRGTPSPRLDSSSSGKSTPSRLASSPPKVSSPREAALSGD ESDEDLAGE VLADDAFSG IDARRNHGAPSGG+GATVGTERASNG AAKPKQQ A+AGRAGVGESLPSSVSAAG TARPLTPNSTSKRS GQGGRSG KDKNRARHG DKKGRASVGG A+ EGGGGALGVIDG GSGLFG GG AFTSYGSEEARPDDSEEEATLDGLVGANRSGPSAHSASS SAPRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQ LLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVV+KLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAA
Sbjct: 3 RSPKSSGDYDSERTGSLSTTAPAQDKLAGEDGRGIGGASGGSTKASSGATPPRGTPSPRLDSSSSGKSTPSRLASSPPKVSSPREAALSGDDESDEDLAGERVLADDAFSGGGGFATGADPAPPAAAAIDARRNHGAPSGGEGATVGTERASNGDAAKPKQQ-----------------------------------------------------------------------AVAGRAGVGESLPSSVSAAGTTARPLTPNSTSKRSPGQGGRSGGKDKNRARHGVDKKGRASVGGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGGGALGVIDGAGSGLFGVSGAGGSSAFTSYGSEEARPDDSEEEATLDGLVGANRSGPSAHSASSSSAPRPIDPREWYCARTQVEKMIRLDYQKVYTNSPKLSIGGASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRPSKPLVPKWEKCLQGGSTDNDPHARSRGKTLRDVSTMRLLNRLYSLTAHIYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVVKLLTGEYSDEGGMVADLRLMVENCKRYYTSSVLLDADTTQAALANAAA 584
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: A0A7S4JU25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JU25_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 4.590e-9 Identity = 52/160 (32.50%), Postives = 79/160 (49.38%), Query Frame = 1
Query: 2290 KCKYRTIDEFVHDVRRLCANSFMWT------------RETSNVTVLSFLRLLETADVKN-VLRPSKPLVPKWEKCLQLLNRLYSLT----AH--IYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYY 2712
K ++T+DEFV DVRR+ +N + R+ + + F + + VL P PL+ W+ CL +L+ L L H ++Y +P+ Y+ + P+DY+ KVK PM V +L G+Y G VAD RL+VENC+ YY
Sbjct: 211 KGDFKTVDEFVLDVRRIFSNCLRYNTGGKEDSFRPVARDLLSSSEEIFALFVAAPEASTTVLYP--PLLYCWKLCLSILDTLLGLKNPTDGHQTVHYFLHPVSFYFGGEL---PQDYSGKVKTPMDFGTVNSRLFEGDYQSVGAFVADCRLIVENCRSYY 365
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: A0A833VWF8_PHYIN (Bromodomain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833VWF8_PHYIN) HSP 1 Score: 61.6 bits (148), Expect = 8.100e-6 Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query: 2299 YRTIDEFVHDVRRLCANSFMWTRETSNVTVL-----SFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAH-------IYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYY 2712
Y TID F +DVR + +N ++ + V+ + ++L E+ K + S P VP+ KC Q+++ + AH + YP++ YY S P P +Y+ VK PM + V KL GEY +A L+L+ +NC RY+
Sbjct: 341 YATIDAFAYDVRLIFSNCLVYNSDVILSKVMRNHAVTLMKLFESQFAK--IGGSWPGVPERWKCHQIIHE---VLAHRTDGQETAQWFKYPVESYYDS-PDQIPYNYSNIVKSPMDIGTVSSKLHLGEYKHVSEFIAGLKLVFDNCIRYW 484
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: W2PH79_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PH79_PHYPN) HSP 1 Score: 61.6 bits (148), Expect = 8.130e-6 Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query: 2299 YRTIDEFVHDVRRLCANSFMWTRETSNVTVL-----SFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAH-------IYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYY 2712
Y TID F +D+R + +N ++ + V+ + ++L E+ K + S P VP+ KC Q++N + AH + YP++ YY S P P +Y + VK PM + V KL GEY +A L+L+ +NC RY+
Sbjct: 357 YATIDAFAYDMRLIFSNCLVYNSDVILSKVMRNHAVTLMKLFESQFGK--IGGSWPGVPERWKCHQIINE---ILAHRTDGQETAQWFKYPIESYYDS-PDQIPYNYYKTVKNPMDIGTVSSKLHLGEYKHVSEFIAGLKLVFDNCIRYW 500
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: A0A662WST3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WST3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.400e-5 Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 1
Query: 2299 YRTIDEFVHDVRRLCANSFMWTRETSNVTVL-----SFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAH-------IYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYY 2712
Y TID F +DVR + +N ++ + V+ + ++L E K + S P +P+ KC Q+++ + AH + YP++ YY S P P Y +KVK PM + V KL GEY VA ++L+ +NC RY+
Sbjct: 368 YATIDAFAYDVRLIFSNCLVYNSDVILSKVMRNHAVTLMKLFEGHFAK--IGGSWPGIPQRWKCHQIVHE---ILAHRTDGQETAQWFKYPVESYYDS-PDQIPYGYYKKVKVPMDIGTVSSKLHLGEYKHASEFVAGMKLIFDNCVRYW 511
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: M4B7Z2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7Z2_HYAAE) HSP 1 Score: 60.8 bits (146), Expect = 1.410e-5 Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 1
Query: 2299 YRTIDEFVHDVRRLCANSFMWTRETSNVTVL-----SFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAH-------IYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYYTS 2718
Y TID F +DVR + +N ++ + V+ + ++L E+ K + S P +P+ KC Q+++ + AH + YP++ YY P P +Y E VK+PM + V +L G+Y V L+L+ +NC RY+ S
Sbjct: 371 YSTIDAFAYDVRLIFSNCLVYNSDVIVSKVMRNHAVTLMKLFESQFAK--IGGSWPGIPERWKCHQIIH---DVLAHRTDGQETAQWFKYPIEAYY-DAPDQIPYNYYETVKEPMDIGSVSSRLHLGKYKHVSEFVVGLKLVFDNCIRYWKS 516
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: A0A0W8CTR7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CTR7_PHYNI) HSP 1 Score: 59.7 bits (143), Expect = 2.350e-5 Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query: 2299 YRTIDEFVHDVRRLCANSFMWTRETSNVTVL-----SFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAH-------IYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYY 2712
Y TID F +D+R + +N ++ + V+ + ++L E+ K + S P VP+ KC Q++N + AH + YP++ YY S P P +Y + V PM + V KL GEY +A L+L+ +NC RY+
Sbjct: 64 YATIDAFAYDMRLIFSNCLVYNSDVILSKVMRNHAVTLMKLFESQFGK--IGGSWPGVPERWKCHQIINE---ILAHRTDGQETAQWFKYPIESYYDS-PDQIPYNYYKTVNNPMDIGTVSSKLHLGEYKHVSEFIAGLKLVFDNCIRYW 207
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Match: A0A329RNE8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNE8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 3.150e-5 Identity = 45/150 (30.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query: 2299 YRTIDEFVHDVRRLCANSFMWTRETSNVTVL-----SFLRLLETADVKNVLRPSKPLVPKWEKCLQLLNRLYSLTAH-------IYYLSYPMKIYYLSDPQAEPKDYAEKVKQPMYMSKVVLKLLTGEYSDEGGMVADLRLMVENCKRYY 2712
Y TID F +D+R + +N ++ + V+ + ++L E+ K + S P VP+ KC Q+++ + AH + YP++ YY S P P +Y + VK PM + V KL GEY +A ++L+ +NC RY+
Sbjct: 356 YATIDAFAYDMRLIFSNCLVYNSDVILSKVMRNHAVTLMKLFESQFTK--VGGSWPGVPERWKCHQIIHE---ILAHRTDGQETAQWFKYPVESYYDS-PDQIPYNYFKTVKNPMDIGTVSSKLHLGEYKHVSEFIAGMKLVFDNCIRYW 499 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8149.19493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8149.19493.1 >prot_Ecto-sp13_S_contig8149.19493.1 ID=prot_Ecto-sp13_S_contig8149.19493.1|Name=mRNA_Ecto-sp13_S_contig8149.19493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=924bp SSSNALGSSSRGKDKDDRNRGRDRATRSSSRDCSRERSLERIYERKRKRGback to top mRNA from alignment at Ecto-sp13_S_contig8149:2..4892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8149.19493.1 ID=mRNA_Ecto-sp13_S_contig8149.19493.1|Name=mRNA_Ecto-sp13_S_contig8149.19493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8149:2..4892- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8149:2..4892- >mRNA_Ecto-sp13_S_contig8149.19493.1 ID=mRNA_Ecto-sp13_S_contig8149.19493.1|Name=mRNA_Ecto-sp13_S_contig8149.19493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2772bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8149:2..4892- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |