mRNA_Ecto-sp13_S_contig814.19482.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig814.19482.1
Unique NamemRNA_Ecto-sp13_S_contig814.19482.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig814.19482.1 vs. uniprot
Match: D8LL16_ECTSI (Similar to neurobeachin like 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL16_ECTSI)

HSP 1 Score: 485 bits (1249), Expect = 3.870e-154
Identity = 256/277 (92.42%), Postives = 257/277 (92.78%), Query Frame = 1 
Query:    1 YICLCERAAVATVAGSAATDDGPSLLLDALHGACALMRLEAPRNMDEASASDRGGIQGASGGAENGPSSRPTRQGDTGVLPLLQETFREHWASARLLVVLESVAGDLAASRSTPKSS-VPKEGCSEIVTACLSLFTAMMARNSLGKKAIRRALSEHYFGRKDSPGAVPSSMPGGAAGWGIGGSSFVALAHLAGVVSPASMCESLVEMLMDGEVPECILET-------GRGQLGGATRIEEGHNCGPEGREEDSDASSPPEIRNPFVVPLIFQLLPDW 807
            YICLCERAAVATVAGSAATDDGP LLLDALHGACALMR EAPRNM EAS SDRGGIQG SGGAENGPSSRPTRQGDTGVLPLLQETFREHWASARLLVVLESVAGDLAASRSTP SS VPKEGCSEIVTACLSLFTAMMARNSLGKKAIRRALSEHYFGRKD PGAVPSSMPGGAAGWGIGGSSFVALAHLAGVVS ASMCESLVEMLMDGEVPEC+LE        GR QLGGATR EEGHNCGPEGREEDS ASSPPEIRNPFVVPLIFQLLPDW
Sbjct:  722 YICLCERAAVATVAGSAATDDGPRLLLDALHGACALMRSEAPRNMGEASTSDRGGIQGTSGGAENGPSSRPTRQGDTGVLPLLQETFREHWASARLLVVLESVAGDLAASRSTPNSSSVPKEGCSEIVTACLSLFTAMMARNSLGKKAIRRALSEHYFGRKDLPGAVPSSMPGGAAGWGIGGSSFVALAHLAGVVSAASMCESLVEMLMDGEVPECVLEISQTENEIGRDQLGGATRSEEGHNCGPEGREEDSGASSPPEIRNPFVVPLIFQLLPDW 998
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BLAST of mRNA_Ecto-sp13_S_contig814.19482.1 vs. uniprot
Match: A0A6H5JA16_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA16_9PHAE)

HSP 1 Score: 481 bits (1238), Expect = 1.160e-152
Identity = 252/270 (93.33%), Postives = 254/270 (94.07%), Query Frame = 1 
Query:    1 YICLCERAAVATVAGSAATDDGPSLLLDALHGACALMRLEAPRNMDEASASDRGGIQGASGGAENGPSSRPTRQGDTGVLPLLQETFREHWASARLLVVLESVAGDLAASRSTPKSS-VPKEGCSEIVTACLSLFTAMMARNSLGKKAIRRALSEHYFGRKDSPGAVPSSMPGGAAGWGIGGSSFVALAHLAGVVSPASMCESLVEMLMDGEVPECILETGRGQLGGATRIEEGHNCGPEGREEDSDASSPPEIRNPFVVPLIFQLLPDW 807
            YICLCERAAVATVAGSAATDDGPSLLLDALHGACALMR EAPRNM E SAS RGGIQ  SGGAENGPSSRPTRQ DTGVLPLLQETFREHWASARLLVVLESVAGDLAASRSTP SS VPKEGCSEIVTACLSLFTAMMARNSLGKKAIRRALSEHY GRKDSPGAVPSSMP GAAGWGIGGSSFVALAHLAGVVS ASMCESLVEMLMDGEVPEC+L+ GR QLGGATR EEGHNCGPEGREEDS ASSPPEIRNPFVVPLIFQLLPDW
Sbjct: 1059 YICLCERAAVATVAGSAATDDGPSLLLDALHGACALMRSEAPRNMGEVSASGRGGIQSTSGGAENGPSSRPTRQEDTGVLPLLQETFREHWASARLLVVLESVAGDLAASRSTPNSSSVPKEGCSEIVTACLSLFTAMMARNSLGKKAIRRALSEHYVGRKDSPGAVPSSMPCGAAGWGIGGSSFVALAHLAGVVSSASMCESLVEMLMDGEVPECVLDIGRDQLGGATRSEEGHNCGPEGREEDSGASSPPEIRNPFVVPLIFQLLPDW 1328
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig814.19482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL16_ECTSI3.870e-15492.42Similar to neurobeachin like 1 n=1 Tax=Ectocarpus ... [more]
A0A6H5JA16_9PHAE1.160e-15293.33BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig814contigEcto-sp13_S_contig814:752..1558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score487.3
Seed ortholog evalue4.7e-135
Seed eggNOG ortholog2880.D8LL16
Model size808
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
Cds size807
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.2354681-CDS-Ecto-sp13_S_contig814:751..15581681464086.2354681-CDS-Ecto-sp13_S_contig814:751..1558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig814 752..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig814.19482.1prot_Ecto-sp13_S_contig814.19482.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig814 752..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig814.19482.1

>prot_Ecto-sp13_S_contig814.19482.1 ID=prot_Ecto-sp13_S_contig814.19482.1|Name=mRNA_Ecto-sp13_S_contig814.19482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
YICLCERAAVATVAGSAATDDGPSLLLDALHGACALMRLEAPRNMDEASA
SDRGGIQGASGGAENGPSSRPTRQGDTGVLPLLQETFREHWASARLLVVL
ESVAGDLAASRSTPKSSVPKEGCSEIVTACLSLFTAMMARNSLGKKAIRR
ALSEHYFGRKDSPGAVPSSMPGGAAGWGIGGSSFVALAHLAGVVSPASMC
ESLVEMLMDGEVPECILETGRGQLGGATRIEEGHNCGPEGREEDSDASSP
PEIRNPFVVPLIFQLLPDW
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mRNA from alignment at Ecto-sp13_S_contig814:752..1558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig814.19482.1 ID=mRNA_Ecto-sp13_S_contig814.19482.1|Name=mRNA_Ecto-sp13_S_contig814.19482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig814:752..1558+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACATTTGTCTCTGCGAGCGGGCAGCGGTGGCGACTGTGGCCGGTTCAGC
TGCTACGGATGATGGGCCGAGCCTCTTACTCGATGCGTTACACGGTGCGT
GTGCGCTTATGCGTTTGGAGGCACCGCGGAACATGGATGAGGCGAGTGCC
AGCGATAGAGGCGGCATTCAGGGCGCGTCTGGTGGAGCCGAGAATGGCCC
GTCCTCACGCCCGACGAGACAAGGGGATACGGGCGTGTTGCCATTGTTGC
AGGAGACGTTTCGAGAACATTGGGCGTCGGCCCGCCTGTTGGTCGTGTTG
GAGAGTGTTGCGGGTGACCTAGCCGCATCCAGGTCCACACCCAAATCATC
CGTGCCGAAGGAGGGATGCTCAGAGATCGTGACAGCTTGTCTGTCTCTTT
TCACCGCAATGATGGCAAGGAACTCCCTCGGAAAGAAGGCAATTAGACGC
GCGCTTTCGGAGCACTATTTCGGAAGGAAGGATTCGCCAGGGGCAGTGCC
ATCGTCAATGCCCGGCGGTGCCGCTGGGTGGGGCATCGGGGGTTCATCAT
TTGTCGCCCTGGCGCACCTCGCTGGCGTAGTGTCCCCTGCATCGATGTGC
GAGTCCTTAGTGGAGATGTTGATGGACGGTGAAGTTCCAGAGTGCATCCT
CGAGACTGGACGTGGCCAGCTGGGTGGAGCCACTAGAATCGAGGAAGGCC
ACAATTGTGGCCCAGAAGGGAGGGAGGAGGATTCGGACGCTTCGTCACCT
CCCGAAATTCGAAACCCTTTTGTGGTGCCACTGATATTTCAGCTCCTTCC
CGACTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig814:752..1558+

>mRNA_Ecto-sp13_S_contig814.19482.1 ID=mRNA_Ecto-sp13_S_contig814.19482.1|Name=mRNA_Ecto-sp13_S_contig814.19482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig814:752..1558+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACATTTGTCTCTGCGAGCGGGCAGCGGTGGCGACTGTGGCCGGTTCAGC
TGCTACGGATGATGGGCCGAGCCTCTTACTCGATGCGTTACACGGTGCGT
GTGCGCTTATGCGTTTGGAGGCACCGCGGAACATGGATGAGGCGAGTGCC
AGCGATAGAGGCGGCATTCAGGGCGCGTCTGGTGGAGCCGAGAATGGCCC
GTCCTCACGCCCGACGAGACAAGGGGATACGGGCGTGTTGCCATTGTTGC
AGGAGACGTTTCGAGAACATTGGGCGTCGGCCCGCCTGTTGGTCGTGTTG
GAGAGTGTTGCGGGTGACCTAGCCGCATCCAGGTCCACACCCAAATCATC
CGTGCCGAAGGAGGGATGCTCAGAGATCGTGACAGCTTGTCTGTCTCTTT
TCACCGCAATGATGGCAAGGAACTCCCTCGGAAAGAAGGCAATTAGACGC
GCGCTTTCGGAGCACTATTTCGGAAGGAAGGATTCGCCAGGGGCAGTGCC
ATCGTCAATGCCCGGCGGTGCCGCTGGGTGGGGCATCGGGGGTTCATCAT
TTGTCGCCCTGGCGCACCTCGCTGGCGTAGTGTCCCCTGCATCGATGTGC
GAGTCCTTAGTGGAGATGTTGATGGACGGTGAAGTTCCAGAGTGCATCCT
CGAGACTGGACGTGGCCAGCTGGGTGGAGCCACTAGAATCGAGGAAGGCC
ACAATTGTGGCCCAGAAGGGAGGGAGGAGGATTCGGACGCTTCGTCACCT
CCCGAAATTCGAAACCCTTTTGTGGTGCCACTGATATTTCAGCTCCTTCC
CGACTGG
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