mRNA_Ecto-sp13_S_contig8135.19475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8135.19475.1
Unique NamemRNA_Ecto-sp13_S_contig8135.19475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8135.19475.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 6.700e-69
Identity = 150/188 (79.79%), Postives = 153/188 (81.38%), Query Frame = -2 
Query:    2 SRSLLPLPALWYICRLARGGGGGSGDDRTLRGSGAVDVASTSGAHAAVSSSGGVLGAVSGWARRRCSHGAVQALSLAAIGAYWVNEVVAAAAAEAGKEHGMGAPAXXXXXXXXXXXXXXGAVLFGSLLPPGRLLLPRATYLLCLAGLAVALLLPHGRRRRKRQDPVPQKGEEGRACTPPGWNGSSSPW 565
            SRSLLPLPALWY+CRLARGG     D R L GSGAVDVA+T GA AAVS SGGVLGA SGWARRRCSHGAVQALSLAAIGAYWVNEVVAAA              XXXXXXXXXXXXXX    FGSLLPP RLLLPRATYLLCLAGLAVALL PHGRRRRK+QDPVPQKGEEGR CTPPG NGSSS W
Sbjct:  836 SRSLLPLPALWYLCRLARGGXXXXXDGRMLWGSGAVDVANTRGAPAAVSLSGGVLGAASGWARRRCSHGAVQALSLAAIGAYWVNEVVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGSLLPPARLLLPRATYLLCLAGLAVALLRPHGRRRRKQQDPVPQKGEEGRTCTPPGGNGSSSSW 1023
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8135.19475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQQ0_ECTSI6.700e-6979.79GPI ethanolamine phosphate transferase 3 n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8135contigEcto-sp13_S_contig8135:2099..2664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size566
Hectar predicted targeting categorymitochondrion
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464085.7609775-CDS-Ecto-sp13_S_contig8135:2098..24131681464085.7609775-CDS-Ecto-sp13_S_contig8135:2098..2413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8135 2099..2413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464085.7732677-UTR-Ecto-sp13_S_contig8135:2413..26641681464085.7732677-UTR-Ecto-sp13_S_contig8135:2413..2664Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8135 2414..2664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8135.19475.1prot_Ecto-sp13_S_contig8135.19475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8135 2099..2413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8135.19475.1

>prot_Ecto-sp13_S_contig8135.19475.1 ID=prot_Ecto-sp13_S_contig8135.19475.1|Name=mRNA_Ecto-sp13_S_contig8135.19475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
TKARTIRSTQAACRLSLLHPFGGPGLAASAAAAHAGAATPPPARLDTTGT
SPVAEEASREAEASQRAPLPLLHLVTTRQPPPPLLVPPCRAPSPLPRRRP
PLPR*
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mRNA from alignment at Ecto-sp13_S_contig8135:2099..2664+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8135.19475.1 ID=mRNA_Ecto-sp13_S_contig8135.19475.1|Name=mRNA_Ecto-sp13_S_contig8135.19475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=566bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8135:2099..2664+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAAGGCGAGGACGATCCGTTCCACCCAGGCGGCGTGCAGGCTCTCCCT
TCTTCACCCTTTTGGGGGACCGGGTCTTGCCGCTTCCGCCGCCGCCGCCC
ATGCGGGAGCAGCAACGCCACCGCCAGCCCGGCTAGACACAACAGGTACG
TCGCCCGTGGCAGAAGAAGCCTCCCGGGAGGCAGAAGCGAGCCAAAGAGC
ACCGCTCCCGCTGCTCCACCTTGTGACAACCCGCCAGCCGCCGCCGCCGC
TGCTGGTGCCCCCATGCCGTGCTCCTTCCCCGCTTCCGCGGCGGCGGCCG
CCACTACCTCGTTGACCCAGTACGCGCCGATGGCCGCGAGGCTCAAGGCT
TGTACCGCCCCGTGGGAGCAGCGCCGACGAGCCCACCCCGAGACCGCTCC
CAACACACCACCCGACGAGGACACCGCCGCATGAGCACCACTCGTGCTGG
CCACATCAACTGCCCCACTCCCCCTCAACGTACGATCGTCACCGCTGCCA
CCGCCGCCGCCGCGTGCAAGCCGGCAGATATACCACAGCGCGGGAAGGGG
AAGCAGGGACCGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8135:2099..2664+

>mRNA_Ecto-sp13_S_contig8135.19475.1 ID=mRNA_Ecto-sp13_S_contig8135.19475.1|Name=mRNA_Ecto-sp13_S_contig8135.19475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8135:2099..2664+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAAGGCGAGGACGATCCGTTCCACCCAGGCGGCGTGCAGGCTCTCCCT
TCTTCACCCTTTTGGGGGACCGGGTCTTGCCGCTTCCGCCGCCGCCGCCC
ATGCGGGAGCAGCAACGCCACCGCCAGCCCGGCTAGACACAACAGGTACG
TCGCCCGTGGCAGAAGAAGCCTCCCGGGAGGCAGAAGCGAGCCAAAGAGC
ACCGCTCCCGCTGCTCCACCTTGTGACAACCCGCCAGCCGCCGCCGCCGC
TGCTGGTGCCCCCATGCCGTGCTCCTTCCCCGCTTCCGCGGCGGCGGCCG
CCACTACCTCGTTGA
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