mRNA_Ecto-sp13_S_contig8132.19471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8132.19471.1
Unique NamemRNA_Ecto-sp13_S_contig8132.19471.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8132.19471.1 vs. uniprot
Match: D7G428_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G428_ECTSI)

HSP 1 Score: 520 bits (1340), Expect = 7.030e-182
Identity = 260/333 (78.08%), Postives = 294/333 (88.29%), Query Frame = 3 
Query:    9 EARVVRSTFIFLVLSSSLGIVRGEFPNYPMTFADMKVLAGYYTEDGKYLGGIPKADGVSREIYECAMDGFFYPT--DTIANSTDGTDDATACMEWRADESAGGTFQLGSCECKSVDNESYCSAWICIQVTEEEECSSDGGSCFVSTNTDSVLCQCDLETASGLYCDSWSCKQVDSEGREEFEEYHCQXXXXXXXXXXXXNGNVTASDEVEVVTCECVATWNGDHVCSYWECEEIGLKSCSSTRGWCNLGLSVGLAGVFGLAGAVLAGW-IVGVGCFEQDITDIWAVVGMGVGGILWCMVWAVGVVIWGGVDGVVFVGIMWGIGFLLASST-GC 995
            EAR+VRST  FLVLSSSLGIV G +P+YPMTFADMKVLAGYYTEDGKYLGGIPKAD VS+EIYECA D +FYP+  DT+ +STDG D+ATACMEWRADESAGG FQ G+CEC S+DNE+YCSAW C QV EEE+C+S G +C VSTNTD+VLCQCDL+  SGLYCDSWSCKQ+DS+GREEFEEYHCQ  XXXXXXXXXXNGNVTASDEVEVVTCECVATW+GD +CSYWECEEIGL SC+STRGWC+LGLS+GLAGVFGLAGA+ AG+     GCFE+  T + AVV  GVGGILWCMVW+VGVVIWGG+DGVV+VGIMWG+GFLLA++T GC
Sbjct:   29 EARLVRSTLFFLVLSSSLGIVGGVYPDYPMTFADMKVLAGYYTEDGKYLGGIPKADPVSKEIYECAADTYFYPSGNDTVTDSTDGKDEATACMEWRADESAGGVFQKGTCECTSIDNENYCSAWTCNQVKEEEDCNSSGSNCVVSTNTDAVLCQCDLDVPSGLYCDSWSCKQIDSDGREEFEEYHCQREXXXXXXXXXXNGNVTASDEVEVVTCECVATWSGDRLCSYWECEEIGLSSCNSTRGWCDLGLSIGLAGVFGLAGALAAGFSFASFGCFERSTTGMRAVVCTGVGGILWCMVWSVGVVIWGGLDGVVYVGIMWGVGFLLATNTTGC 361
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BLAST of mRNA_Ecto-sp13_S_contig8132.19471.1 vs. uniprot
Match: A0A6H5JXC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC2_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 2.100e-117
Identity = 200/264 (75.76%), Postives = 210/264 (79.55%), Query Frame = 3 
Query:   12 ARVVRSTFIFLVLSSSLGIVRGEFPNYPMTFADMKVLAGYYTEDGKYLGGIPKADGVSREIYECAMDGFFYPTDTIANSTDGTDDATACMEWRADESAGGTFQLGSCECKSVDNESYCSAWICIQVTEEEECSSDGGSCFVSTNTDSVLCQCDLETASGLYCDSWSCKQVDSEGREEFEEYHCQXXXXXXXXXXXXNGNVTASDEVEVVTCECVATWNGDHVCSYWECEEIGLKSCSSTRGWCNLGLSVGLAGVFGLAGAVLAG 803
            A VV STF+FLVLSS LGIVRGEFP+YPMTF DMKVLAGYYTEDGK             EIYECA DGFFYPTDT+ANSTDG  +ATACMEWRADESAG                 YCSAWICIQV E EEC+SDG SCFVSTNT+SVLCQCDLETASGLYCDSWSCKQ+DSEGREEFEEY+CQ XXXXXXXXXXXNGNVTASDEVEVVTCECVAT     V +Y      GLKSCSS RGWC+LGLSVGLAGVFGLAGAVLAG
Sbjct:    6 AGVVCSTFVFLVLSSFLGIVRGEFPDYPMTFTDMKVLAGYYTEDGK-------------EIYECATDGFFYPTDTMANSTDG--EATACMEWRADESAG-----------------YCSAWICIQVAEVEECNSDGDSCFVSTNTNSVLCQCDLETASGLYCDSWSCKQIDSEGREEFEEYYCQRXXXXXXXXXXXNGNVTASDEVEVVTCECVATGT---VITY------GLKSCSSIRGWCDLGLSVGLAGVFGLAGAVLAG 228
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BLAST of mRNA_Ecto-sp13_S_contig8132.19471.1 vs. uniprot
Match: D7FR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR75_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 2.350e-80
Identity = 152/345 (44.06%), Postives = 197/345 (57.10%), Query Frame = 3 
Query:   39 FLVLSSSL---GIVRGEFPNYPMTFADMKVLAGYYTEDGKYLGGIPKADGVSREIYECAMDGFFYPTDTIANSTDGTDDATACMEWRADESAGGTFQLGSCECKSVDNESYCSAWICIQVTEEEECSSDGGSCFVSTNTDSVLCQCD-LETASGLYCDSWSCKQVDSEGREEFEEYHCQXXXXXXXXXXXXNGNVTASDEVEVVTCECVATWNGDHVCSYWECEEIGLKSCSST-RGWCNLGLSVGLAGVFGLAGAVLAGWIVG-VGCFEQDITDIWAVVGMGVG-GILWCMVWAVGVVIWGGVDGVVFVGIMWGIGFLLASSTGCW-----YRKKDRQ*YGIPV 1037
            FLVL S+     + R E P++PMT ADM+VLAGYY+ DGKYLGG+PKA  +SREIY+C    +  P +T +N       AT C  W ADES GG FQLG CECK     S             +E            N+D  LCQCD    A GL     SCKQ+ S GR EFE+Y CQ            NGNVTASDE E+V+CEC+A W+GD VCS+WECEE+GL +CSS    WC+LG+S+G+ G  GL G ++  + +G VG  + +         MG+  G +WC+ W+ GVVIWGG  G  +VGIMWG+  +LA+    +     YR + +    +PV
Sbjct:   38 FLVLFSTAIFTDVARAELPDFPMTLADMEVLAGYYSADGKYLGGMPKAHTLSREIYDCTDFQYSEPNNTASN-------ATYCTGWSADESYGGGFQLGDCECKF----SXXXXXXXXXXXXXQE------------NSDYTLCQCDDTGAAEGLXXXXXSCKQICSGGRAEFEDYRCQRPSPSGHYCEAWNGNVTASDEFEIVSCECLANWHGDQVCSFWECEELGLSTCSSAGASWCDLGVSIGVGGGIGLLGVLVICYGIGLVGRIDSEGQSDTTAGLMGIALGTVWCLSWSSGVVIWGGEAGATYVGIMWGVPIVLAAVVAAFRCFAVYRVRTKDEQELPV 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8132.19471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G428_ECTSI7.030e-18278.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXC2_9PHAE2.100e-11775.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR75_ECTSI2.350e-8044.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8132contigEcto-sp13_S_contig8132:2246..3988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1328
Hectar predicted targeting categoryother localisation
Exons2
Cds size927
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464085.4994097-UTR-Ecto-sp13_S_contig8132:2245..23401681464085.4994097-UTR-Ecto-sp13_S_contig8132:2245..2340Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8132 2246..2340 +
1681464085.5337515-UTR-Ecto-sp13_S_contig8132:3682..39881681464085.5337515-UTR-Ecto-sp13_S_contig8132:3682..3988Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8132 3683..3988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464085.5110867-CDS-Ecto-sp13_S_contig8132:2340..29241681464085.5110867-CDS-Ecto-sp13_S_contig8132:2340..2924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8132 2341..2924 +
1681464085.5224783-CDS-Ecto-sp13_S_contig8132:3339..36821681464085.5224783-CDS-Ecto-sp13_S_contig8132:3339..3682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8132 3340..3682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8132.19471.1prot_Ecto-sp13_S_contig8132.19471.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8132 2341..3682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8132.19471.1

>prot_Ecto-sp13_S_contig8132.19471.1 ID=prot_Ecto-sp13_S_contig8132.19471.1|Name=mRNA_Ecto-sp13_S_contig8132.19471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MTFADMKVLAGYYTEDGKYLGGIPKADGVSREIYECAMDGFFYPTDTIAN
STDGTDDATACMEWRADESAGGTFQLGSCECKSVDNESYCSAWICIQVTE
EEECSSDGGSCFVSTNTDSVLCQCDLETASGLYCDSWSCKQVDSEGREEF
EEYHCQREAESGHYCEAWNGNVTASDEVEVVTCECVATWNGDHVCSYWEC
EEIGLKSCSSTRGWCNLGLSVGLAGVFGLAGAVLAGWIVGVGCFEQDITD
IWAVVGMGVGGILWCMVWAVGVVIWGGVDGVVFVGIMWGIGFLLASSTGC
WYRKKDRQ*
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mRNA from alignment at Ecto-sp13_S_contig8132:2246..3988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8132.19471.1 ID=mRNA_Ecto-sp13_S_contig8132.19471.1|Name=mRNA_Ecto-sp13_S_contig8132.19471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1743bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8132:2246..3988+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCACTCGAGGCTAGAGTTGTTCGGTCCACATTCATTTTTCTGGTGCTG
TCGAGTTCCTTGGGTATCGTGCGGGGAGAATTCCCGAATTACCCCATGAC
CTTCGCCGACATGAAGGTATTGGCGGGATACTACACAGAAGACGGGAAAT
ACTTGGGAGGCATTCCTAAGGCGGACGGTGTGAGCAGAGAGATCTACGAG
TGTGCCATGGATGGGTTTTTCTATCCGACCGACACCATCGCCAACTCTAC
CGACGGTACGGATGATGCTACGGCATGCATGGAGTGGAGGGCGGACGAGT
CCGCGGGAGGCACCTTCCAGCTGGGCTCATGCGAGTGCAAGTCTGTCGAC
AACGAAAGCTACTGCTCCGCTTGGATCTGCATCCAGGTTACAGAAGAGGA
GGAGTGCAGCTCCGACGGAGGCAGCTGTTTCGTGTCCACCAATACCGACT
CCGTCCTATGCCAGTGCGACCTCGAGACTGCCTCTGGCCTGTATTGTGAC
TCGTGGTCGTGTAAGCAAGTAGACTCTGAGGGCAGGGAGGAGTTCGAAGA
GTACCATTGCCAGCGTGAAGCCGAGTCGGGACACTATTGCGAGGCTTGGA
ACGGAAACGTGACTGCTAGCGATGAAGTCGAGGTGGTGACGTGCGAGTGC
GTGGCTACTTGGAACGGTGATCACGTGTGGTGAGCGGAGGGGTGCGCGGC
TTGTGTTTCGCTCCTCTTGTGGGTGCAGTGAAAAGCATGTTTCGAATGTC
TGCCCGCTGAAGAACGTTCACGGAGAGACCTGGGCAAACATACATCAGCA
GGAGCTCGCCCAGTCTCTAGCTGTTATTATTATTTAGTTTTTCTTTGCCC
CATGCGTCAAGGGAAAACCGCCAGTGTGTAGCGCGTTTCGGCCATGGAAC
TCCAGCCTTTCTCGCCGCCTGGATTCTGTTGCGGGAGGCTTGCTGGTGGT
ATGGCTGGGGTTGAGAGGTAGTGGTGTCGTGTTCATCCAGGAAGCGTCTG
ACGCCTCAACCGTTGGGTTTCATCGAAACTGCTGTCTACAAGGCTTTTAA
CGCCGGCACCCCCCCTCCCTGCCCCTCGCTTTCATTTCCGCCAGCTCCTA
CTGGGAGTGCGAAGAAATAGGTCTGAAAAGCTGCAGTTCGACAAGGGGCT
GGTGCAACCTGGGCTTGTCCGTGGGCTTGGCGGGCGTGTTTGGACTCGCT
GGGGCTGTGCTGGCCGGCTGGATCGTTGGGGTTGGTTGCTTCGAGCAAGA
TATCACGGACATTTGGGCGGTGGTGGGCATGGGTGTCGGTGGTATCCTTT
GGTGCATGGTGTGGGCAGTCGGCGTCGTCATCTGGGGCGGTGTGGATGGG
GTAGTCTTTGTCGGAATCATGTGGGGTATCGGTTTCCTGTTGGCCTCCTC
CACCGGCTGTTGGTATCGCAAAAAAGATCGGCAGTAGTACGGCATCCCAG
TGTAGCCATCCCTTCATCAAAGCAACGTGCAGCAGAGGCGTAAGAGGCGG
AAGGGTCTGCCGGGACGAATTGCAGTTGCACAGTGTTGGGACCCTTCGGA
TAAGGTATAGGTCGTAGCCTGTCTTTTTCGTACATGTGTACTGTAGACGT
CCACAAATATACCCTCTTGCAAGTAACTCGCCATTATATGTGTTAGCAAA
CAAGGATCCGTCTCGCTCAGCAGCGGAACTTCAAGTAGCCAGGTCGTTGA
CGATCTATCTACACTTTCAAGCATCAATTCAAGAAAACGTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8132:2246..3988+

>mRNA_Ecto-sp13_S_contig8132.19471.1 ID=mRNA_Ecto-sp13_S_contig8132.19471.1|Name=mRNA_Ecto-sp13_S_contig8132.19471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8132:2246..3988+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTTCGCCGACATGAAGGTATTGGCGGGATACTACACAGAAGACGG
GAAATACTTGGGAGGCATTCCTAAGGCGGACGGTGTGAGCAGAGAGATCT
ACGAGTGTGCCATGGATGGGTTTTTCTATCCGACCGACACCATCGCCAAC
TCTACCGACGGTACGGATGATGCTACGGCATGCATGGAGTGGAGGGCGGA
CGAGTCCGCGGGAGGCACCTTCCAGCTGGGCTCATGCGAGTGCAAGTCTG
TCGACAACGAAAGCTACTGCTCCGCTTGGATCTGCATCCAGGTTACAGAA
GAGGAGGAGTGCAGCTCCGACGGAGGCAGCTGTTTCGTGTCCACCAATAC
CGACTCCGTCCTATGCCAGTGCGACCTCGAGACTGCCTCTGGCCTGTATT
GTGACTCGTGGTCGTGTAAGCAAGTAGACTCTGAGGGCAGGGAGGAGTTC
GAAGAGTACCATTGCCAGCGTGAAGCCGAGTCGGGACACTATTGCGAGGC
TTGGAACGGAAACGTGACTGCTAGCGATGAAGTCGAGGTGGTGACGTGCG
AGTGCGTGGCTACTTGGAACGGTGATCACGTGTGCTCCTACTGGGAGTGC
GAAGAAATAGGTCTGAAAAGCTGCAGTTCGACAAGGGGCTGGTGCAACCT
GGGCTTGTCCGTGGGCTTGGCGGGCGTGTTTGGACTCGCTGGGGCTGTGC
TGGCCGGCTGGATCGTTGGGGTTGGTTGCTTCGAGCAAGATATCACGGAC
ATTTGGGCGGTGGTGGGCATGGGTGTCGGTGGTATCCTTTGGTGCATGGT
GTGGGCAGTCGGCGTCGTCATCTGGGGCGGTGTGGATGGGGTAGTCTTTG
TCGGAATCATGTGGGGTATCGGTTTCCTGTTGGCCTCCTCCACCGGCTGT
TGGTATCGCAAAAAAGATCGGCAGTAG
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