mRNA_Ecto-sp13_S_contig8129.19470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8129.19470.1
Unique NamemRNA_Ecto-sp13_S_contig8129.19470.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A6H5K6Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Q8_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 7.280e-152
Identity = 233/262 (88.93%), Postives = 236/262 (90.08%), Query Frame = 3
Query:   24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQGERLLDEDVGDG 809
            MRRRGVGVGAVKRKEKNKEAFEAVGK+VAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFA+LEIG TTMVVSVPRELSSDHSAVLLLAEASGRITEADISE+LQWEGGRPRRVLDELMQ                       YFFPSLW GERLLDE VGDG
Sbjct:    1 MRRRGVGVGAVKRKEKNKEAFEAVGKRVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFALLEIGKTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEELQWEGGRPRRVLDELMQEGMAWVDGDGAGPAMGGGGGRPAYFFPSLWHGERLLDEGVGDG 262          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: D8LQG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG3_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 3.070e-130
Identity = 209/264 (79.17%), Postives = 214/264 (81.06%), Query Frame = 3
Query:   75 KEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGV-------------------DPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQGERLLDEDVGDG 809
            ++AFEAVGK+VAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIG                    D    N+GFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEIS DDVRRATSKLQVLGSGF+VLEIG TTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ                       YFFPSLWQGERLLDE VGDG
Sbjct:    5 RQAFEAVGKRVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGCERGRGKERDIARGVEGAKRDRDMHNRGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISTDDVRRATSKLQVLGSGFSVLEIGKTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQEGMAWVDGDGAGPAMGGGGGRPAYFFPSLWQGERLLDEGVGDG 268          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A835YIN3_9STRA (EAP30/Vps36 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIN3_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.420e-85
Identity = 155/277 (55.96%), Postives = 181/277 (65.34%), Query Frame = 3
Query:   24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIG----------------------VDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQGERLL 788
            MRRRGVGV AVK + + K+AFE VG+  A EN++H+   + TFKG LE+FARKYKK INQDPAFRQQFQ MCASIG                      +DPLASNKGFWAEVLGVGDFYYELAVQI EVC+ATR  NGGLMAL ELLQRLRA+ + KK   IS DD++RA +KL+VLG GFA++E+G T MV+SVPRELS+D SAVL  AE SG  +   +   L W   R RR L  L Q                       +FFPSLW+GE LL
Sbjct:    1 MRRRGVGVAAVKHRAREKDAFEVVGQAAAAENMAHVQATLETFKGHLEDFARKYKKSINQDPAFRQQFQTMCASIGGMGKGRHGALREQCRPHNCASHLDPLASNKGFWAEVLGVGDFYYELAVQITEVCIATRETNGGLMALQELLQRLRARRS-KKSPAISLDDIKRAIAKLKVLGRGFALVEVGKTQMVLSVPRELSNDASAVLQAAEGSGHASVRALCVGLSWTQDRARRALTALAQDGMAWVDEQAPGGEPL-------FFFPSLWKGEHLL 269          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: W7TGH7_9STRA (EAP30 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGH7_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.560e-78
Identity = 137/268 (51.12%), Postives = 187/268 (69.78%), Query Frame = 3
Query:   30 RRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEAS-GRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQG---ERLLDEDVGDG*NES 821
            RRG GV ++KRKE+ KEAF ++GK++ EEN++H++G+MATFK SLE+FARK+KKDIN +P  R +F  MCA IGVDPLASNKGFWA++LGVGDFYYELAVQI+E+CL TRS+NGGL+ L +L QR++    R+K  +IS +D++ A +K+ +LG+GF++L+ G TT+VVSVP ELSSDH+A+L +A+AS   +T  ++ +KLQW   R R  LD +MQ                       Y+FPSLW+    +   D   G G  E 
Sbjct:    2 RRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQ---KRRKVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREV------YWFPSLWEEGLCQTQRDRVTGQGGREE 260          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A7S2W3J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3J7_9STRA)

HSP 1 Score: 231 bits (588), Expect = 3.570e-69
Identity = 115/219 (52.51%), Postives = 163/219 (74.43%), Query Frame = 3
Query:   24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEA-SGRITEADISEKLQWEGGRPRRVLDELM 677
            MRRRGVGVG VK +EK  E ++ +G ++ ++ + H + ++  F+  LE+FA KYK  I  DP FR++FQ MC  IGVDPLASNKG W E+LGVGDFYYEL VQI+E+C+ TRS NGGL+++ +LL++LR   NR  RQE+S+DDV+R+ SKL+ LGSGF++L++G TTMV+SVP EL+ DHSAVL +A+  +G++T   + ++L W   R  R L+ ++
Sbjct:    7 MRRRGVGVGRVKNREKQTEKYKQLGAELQDDRVKHATEVLGQFRTQLEDFAEKYKSSIRSDPVFRKEFQDMCMEIGVDPLASNKGLWGELLGVGDFYYELGVQIIEICIRTRSSNGGLISMRDLLRKLRKDSNRS-RQEVSSDDVKRSVSKLKKLGSGFSLLQVGRTTMVLSVPVELNRDHSAVLEVAQRHAGQVTLDGVQKELGWAEDRATRALERMV 224          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A7S3Y4V3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4V3_HETAK)

HSP 1 Score: 224 bits (570), Expect = 4.260e-67
Identity = 118/197 (59.90%), Postives = 146/197 (74.11%), Query Frame = 3
Query:   27 RRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQE------ISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASG 599
            RRRGVGVGAVK+K++  +AFE VGK+VA+EN  H++ ++ +FK +LEEFA KYKKDI  DPAFRQQFQ MCA IGVDPLASNKGFWAE+LGVGDFYYELA+Q+ EVCLA R+  GGL+A+ ELL RL A+  +           I+ DDVRRA  KL+ LGSG+ ++ +G   MV+SVP ELS D +  L  A A G
Sbjct:    3 RRRGVGVGAVKKKQQQAKAFEEVGKRVADENFQHVTSLLESFKTNLEEFAVKYKKDIRADPAFRQQFQTMCAKIGVDPLASNKGFWAEILGVGDFYYELALQVTEVCLARRAATGGLLAVGELLARLEARRIQAAAARDGGATAITRDDVRRAVGKLKALGSGYQLVHLGPHEMVLSVPLELSRDTTEALAAARARG 199          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A8C3N4X4_GEOPR (Vacuolar-sorting protein SNF8 n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3N4X4_GEOPR)

HSP 1 Score: 223 bits (569), Expect = 1.030e-66
Identity = 118/219 (53.88%), Postives = 157/219 (71.69%), Query Frame = 3
Query:   24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ 680
            M RRGVG GA+ R++  +  ++  G  +AE+ L+ +S  + TF+  L+ FA K+K++I + P FR QFQ MCA+IGVDPLAS KGFWAEVLGVGDFYYEL VQI+EVCLA R  NGGL+ L EL Q++  KG  K  Q++SADD+ RA  KL+VLGSGF ++ +G T +V SVP ELS DH+ VL LAE  G +T ++I + L WE  R ++VLD L++
Sbjct:    1 MHRRGVGAGAIARRKLTEAKYKERGTVLAEDQLAQMSKQLETFRTHLQAFASKHKQEIRRSPEFRLQFQHMCAAIGVDPLASGKGFWAEVLGVGDFYYELGVQIIEVCLALRHRNGGLITLEELQQQV-LKGRGKFAQDVSADDLLRAIRKLKVLGSGFGLIPVGGTVLVQSVPAELSMDHTVVLQLAEKKGFVTVSEIRDSLGWETERAKQVLDHLLK 218          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A067BX53_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BX53_SAPPC)

HSP 1 Score: 223 bits (569), Expect = 1.100e-66
Identity = 118/220 (53.64%), Postives = 159/220 (72.27%), Query Frame = 3
Query:   24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLA-EASGRITEADISEKLQWEGGRPRRVLDELMQ 680
            MRR  +G+GAVK K++ K+A+E VG ++ + +L+H+   +  FK +LE FA KYK  I +DPAFR +FQVMC+ IGVDPLAS KGFW+E+L +GDFYYEL VQI+EVC+ TR  NGGL+ + ELL RL  K    + Q IS DD++R+  KL+VLG GF V+E+G  TM+V+VP ELS DHSA+LLLA E  G +T A ++EKL W+  R    L+ L++
Sbjct:    1 MRRGKMGIGAVKWKQEQKKAYEEVGTQLTQSHLAHVQAQLDVFKTNLEAFAVKYKAQIKKDPAFRMRFQVMCSKIGVDPLASQKGFWSELLDMGDFYYELGVQIIEVCILTRPKNGGLIPIHELL-RLLDKKRGLRMQRISEDDIKRSVKKLKVLGEGFQVIELGAKTMIVTVPVELSQDHSAILLLAQETQGMVTTALLAEKLLWDVNRSTIALNVLLR 219          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: UPI001E1D413E (vacuolar-sorting protein SNF8-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D413E)

HSP 1 Score: 223 bits (568), Expect = 1.500e-66
Identity = 112/219 (51.14%), Postives = 158/219 (72.15%), Query Frame = 3
Query:   24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ 680
            MRRRG G+ A+K K   +  ++  G ++AE+  + +S  M TFK  LE+F  K+K +I +DP FR QFQ MCAS+GVDPLAS+KGFWAE+LGVGDFYYEL VQI+EVCLAT   NGGL+++ EL ++L+ K   KK Q++S DD+ RA  KL+ LG+GF V+ +G T M+ SVP ELS DH+AV+  A++S  +T++ +++ L+WE  R  R L+ L++
Sbjct:    1 MRRRGAGIAAIKNKNLAQAKYKDKGNEIAEDQFAQMSKQMETFKSHLEDFTAKHKDEIRKDPEFRAQFQEMCASVGVDPLASSKGFWAEMLGVGDFYYELGVQIIEVCLATSHRNGGLISIEELKEKLK-KSRSKKSQDVSYDDLLRAIKKLKALGNGFTVIPVGGTYMIQSVPGELSMDHTAVIQQAQSSAHVTKSKLTKDLKWEEERANRALNYLVK 218          
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A1S3IXU7_LINUN (Vacuolar-sorting protein SNF8 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IXU7_LINUN)

HSP 1 Score: 222 bits (566), Expect = 2.800e-66
Identity = 118/219 (53.88%), Postives = 158/219 (72.15%), Query Frame = 3
Query:   24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ 680
            MRRRG+G+GA+K K   +  F+  G ++AE+ L+ +S  +  F+  LE+FA K+K DI +DP FR+ FQ MCA+IGVDPLAS KGFWAE+LGVGDFYYEL VQIVEVCLAT   NGGLM L EL Q+L +   ++K QEIS DD+ RA  KL+VLG+GF V+ +G   +V SVP ELS DH+AVL LAE +G ++ + I ++L+W   R  R +D +++
Sbjct:    1 MRRRGIGMGAIKNKNLAQARFKDKGSELAEDQLNQMSKQLDVFRTHLEDFAAKHKDDIRKDPQFRKHFQEMCATIGVDPLASGKGFWAEMLGVGDFYYELGVQIVEVCLATSHRNGGLMDLEELRQKLLSTRGKRK-QEISIDDLMRAIKKLKVLGNGFTVIPVGGRYLVQSVPGELSMDHTAVLQLAEDTGYVSMSMIRDRLKWGEERSHRAVDYMLK 218          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6Q8_9PHAE7.280e-15288.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQG3_ECTSI3.070e-13079.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIN3_9STRA1.420e-8555.96EAP30/Vps36 family-domain-containing protein n=1 T... [more]
W7TGH7_9STRA1.560e-7851.12EAP30 family protein n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S2W3J7_9STRA3.570e-6952.51Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3Y4V3_HETAK4.260e-6759.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8C3N4X4_GEOPR1.030e-6653.88Vacuolar-sorting protein SNF8 n=1 Tax=Geospiza par... [more]
A0A067BX53_SAPPC1.100e-6653.64Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
UPI001E1D413E1.500e-6651.14vacuolar-sorting protein SNF8-like n=1 Tax=Mercena... [more]
A0A1S3IXU7_LINUN2.800e-6653.88Vacuolar-sorting protein SNF8 n=1 Tax=Lingula ungu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8129contigEcto-sp13_S_contig8129:1100..5855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score388.7
Seed ortholog evalue2.2e-105
Seed eggNOG ortholog2880.D8LQG3
Preferred nameSNF8
Model size1428
KEGG koko:K12188
KEGG Pathwayko04144,map04144
KEGG ModuleM00410
GOsGO:0000003,GO:0000429,GO:0000430,GO:0000433,GO:0000578,GO:0000741,GO:0000742,GO:0000746,GO:0000747,GO:0000814,GO:0003002,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005768,GO:0005770,GO:0005829,GO:0005886,GO:0006355,GO:0006357,GO:0006403,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006914,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007154,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0008022,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010796,GO:0010797,GO:0010941,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016482,GO:0016604,GO:0017157,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030154,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032535,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0033620,GO:0034613,GO:0035282,GO:0036257,GO:0036258,GO:0036452,GO:0042058,GO:0042059,GO:0042176,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042886,GO:0042981,GO:0043067,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043632,GO:0043900,GO:0043903,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044764,GO:0045013,GO:0045014,GO:0045022,GO:0045184,GO:0045324,GO:0045450,GO:0045732,GO:0045892,GO:0045921,GO:0045934,GO:0045990,GO:0046015,GO:0046618,GO:0046907,GO:0046983,GO:0047485,GO:0048284,GO:0048468,GO:0048469,GO:0048471,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051036,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055037,GO:0060255,GO:0060627,GO:0060810,GO:0060811,GO:0061635,GO:0061919,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090066,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:0098927,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903772,GO:1903900,GO:1904669,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons6
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG3341@1,KOG3341@2759
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-10_005530.1
Cds size789
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8129.19470.1prot_Ecto-sp13_S_contig8129.19470.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8129 1716..5832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464085.3712635-UTR-Ecto-sp13_S_contig8129:1099..17151681464085.3712635-UTR-Ecto-sp13_S_contig8129:1099..1715Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8129 1100..1715 -
1681464085.4565878-UTR-Ecto-sp13_S_contig8129:5832..58551681464085.4565878-UTR-Ecto-sp13_S_contig8129:5832..5855Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8129 5833..5855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464085.3862188-CDS-Ecto-sp13_S_contig8129:1715..18461681464085.3862188-CDS-Ecto-sp13_S_contig8129:1715..1846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8129 1716..1846 -
1681464085.397015-CDS-Ecto-sp13_S_contig8129:2262..24401681464085.397015-CDS-Ecto-sp13_S_contig8129:2262..2440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8129 2263..2440 -
1681464085.4072542-CDS-Ecto-sp13_S_contig8129:2937..30511681464085.4072542-CDS-Ecto-sp13_S_contig8129:2937..3051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8129 2938..3051 -
1681464085.4177957-CDS-Ecto-sp13_S_contig8129:3330..34691681464085.4177957-CDS-Ecto-sp13_S_contig8129:3330..3469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8129 3331..3469 -
1681464085.4346714-CDS-Ecto-sp13_S_contig8129:4086..42561681464085.4346714-CDS-Ecto-sp13_S_contig8129:4086..4256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8129 4087..4256 -
1681464085.446589-CDS-Ecto-sp13_S_contig8129:5775..58321681464085.446589-CDS-Ecto-sp13_S_contig8129:5775..5832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8129 5776..5832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8129.19470.1

>prot_Ecto-sp13_S_contig8129.19470.1 ID=prot_Ecto-sp13_S_contig8129.19470.1|Name=mRNA_Ecto-sp13_S_contig8129.19470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp
MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEF
ARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYEL
AVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATS
KLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADIS
EKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQ
GERLLDEDVGDG*
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mRNA from alignment at Ecto-sp13_S_contig8129:1100..5855-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8129.19470.1 ID=mRNA_Ecto-sp13_S_contig8129.19470.1|Name=mRNA_Ecto-sp13_S_contig8129.19470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8129:1100..5855- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGGGTAGACTAGCATCGCAATGAGAAGACGAGGAGTTGGCGTGGGT GCGGTGAAGCGCAAAGAGAAGAACAAAGAGGTGGGCAATATATTATATTT CCCAGTTGACTTGCTGGGGCGTGTAGTAGTGAGCAGATACAGCAGTAGAC TACTTCATGTATTGATGTAGTGCTGGATTCTACCAATTTTTACGAACCGA AAAGCTGACGAAACGTCCATGATCTCTGTGAAATATTATGTAGCTTTAGC GATATTTATCGCCTCAATATTGTGTGCACTGCTGTACAACCATGTACAAG TAGAGTCCTCTACAATTATGCTTTGGGTGAACCCAGAGTTAGTTGTTGAA CCAGTGATGTACAAACATCAACTACTTGTGCTTTCGAACTATGTATGAGT CTACTTAAGTTTGAGCCCATGACATGCGAAAGGGTTACTTGTACCTCTCA TCGTTTCGCATTCCGAGAACGCGGCTGCGCCGCATTTTCGCCCAGTTTGC GGCCTCTAGACCGTGTGTTGGCCGTGGGTGAGGGTGAGGATTAGTCATAG TGTTAGGGTTACGGGTGGGTTGGGTTGGGTTAGGTCGGCCACGGTTTGTC CTAGCCTTGCGCTGTGTGTCCTAGCCTTCAACACCGGTCAGACCCAAAGA GTCACGAAAAGACAGTAAATAGACGCGCAGTGACCGCAATCAAACCACTT GAAGTAAGTGTGTCACAAGAGCGCAGCAGGACGTCGAACGCAGGGTGCAT CAGAATGAAAAACATGATAGGGTGACCCCTTGACCTATGCATACAAGTTC AGTTTCCTTGTCTGGCACATAGATCGCTAACCTACAAGGACGTTTCCTCA TCGCTGCATCATCCTTGCCGCCGTGTGTGTGCCTTGGCGATGGCGTGCTA CAAACACGTAAGATTTGTTGCGCTTATCTTGAAAGAACCACTTCTTGAGG ACGAGGCGAAACAAAGAAGTCAAACTAGATAAGTCGCATAAGGGCCGAAC GACATCCGAACGGTTTGCATGACAAGGAACCCACTCAAAATGCAGCTCCC CACCTCGAAGGAAAACCAGTATCTACTTTTGGTGTTAGATTTGTTGCTTG ACACAAGTGCAGTAGGTGCAGCGCGACAGCGTATTGTTTGGATGTAGTCT ACGTCCCACGGACTGTGGCTACGTTGTAAGCGTACGGGGTTCTACCATCG GGCTCCCAAACATGTGTAGCAGGACCGAGCACTATGCGCCTAACGGCCGA TGGAAATTTTCGAATGATGATGGGCGTGTCGTGTGCGGGCTGACAACCGG GCGGATGCCATAAGCATGCCAGGCCTTTTTCTACATCGAGCTGTCGATGT GCCAACATTCCCGGAAAGTTTTGCTGGTGGCAAAGAAGCTCGGTAGGGTT AGGCGCAGGCTGTCGGCATAGTTACTCAAGGAACTTGGTCGACTTGTGTG CGTCTTATCATCTATTCACGTTGTAAGAGCTCAACCTGCGTCCAGTGTTT TGGAACCCGGGAATCGGGGGCCCCTCTTGCAAACGTGAAGGGGCATGCCT ATAGCATTTGATCAAAACCACTCGACCCCAAATCCCTCTGACGCCGCAGG CGTTTGAGGCGGTCGGCAAGAAAGTTGCGGAGGAGAACCTTAGCCACATA TCCGGCATGATGGCAACCTTCAAGGGTAGCCTGGAGGAGTTTGCACGGAA ATACAAGAAGGACATCAACCAGGATCCCGCTTTTCGACAGCAGTTTCAAG TCATGTGTGCCAGCATCGGGTGCGAGAGAGGGAGAGGGAAAGAGAGAGAC ATAGCTAGGGGGGTTGGAGGTGCAAAGAGAGACAGAGATATGCATAGTCG GGCGAGAGATGTATGTCACTCCACCGCTGATGGTATTGAGGGAGTCGGGC CGACTCTTGCAGCTTCACGAAGTTGTACTTCGGAGTACGATTTTTACTTG CCAAACCCACGGGGATCGACCGCGTCAAGTGGTAGGTCAGTACGGGGAGG TGAAGGTACTGGGTTGTGGAGAGATCGGAACGGTTTTTAATATGGAGACA ACAACAACACCAAGAACCAATTGACGCTCTGCACATGCAACCTGTGCATG CACTTCGAGGATCCACTCGCAGTGTGGGACTTTCGGAGAGTGGAACACAC TCGCCCCTCAATAGCTATGACTGCTGGCTCGTCTTGTAGGTTTGACTCGG CCTTTAGAGCACTTCCAACTGCCCACCTATGCAAGATCTGTTTTCCGATT TGTTCTTAGCGTTGCATTAGCTTCGCCTGTGCTCCTTCGCACAAACCTCG TCGATCTCGCAATGTTCCTACACGTATTCCACCTAATCCCCAACCGCGTA CACCCCCCCCTCTTTCACGAAATTTTGGTGAAAAAGTGTGGACCCTCTGG CATCGAACAAGGGCTTTTGGGCTGAAGTACTTGGCGTCGGCGATTTCTAC TACGAACTTGCGGTGCAGATTGTGGAGGTGTGCCTCGCGACCAGATCTGT GAACGGGGGGCTTATGGCGTTGCCGGTGAGAAGGATGCGTAGCCCGTGAG GTTGGGGTAAAGATGTGAGTGGCGTCATTGCTCAGAATGCTCTTGCAGTT TGGCAGTTACACGCAGATGCTGCTTGTTGCTGCAGAGAGGACAAATCAAG TTGTACGTGCAAGCACGACGCGTTGGGACCGGAAGGAGTCCTTCGAAAAT GTGCTACTGTCACCGCCAAGAAAGATTTCCCTTTTCTATGGTTCGTAAGT TTATCCGCGAAAGAGCCTCCCTTCCTCGTTCTCCACTGTGTTCGTCGCGC GTAGGAGCTGCTGCAACGCCTCCGAGCGAAAGGAAACCGAAAAAAACGCC AAGAAATATCCGCGGATGATGTCCGAAGAGCAACGTCGAAGCTGCAGGTT CTCGGGAGCGGCTTTGCGGTGAGGCAGACGTCGGGGATATGCCGATTCTT CGTAGAAAAGAAGTTCACACCTGGACCTCAGCTGGCACCCGTACACACAT AGCAGCAATGGTAAACACTTGCAGTTTTCTTCTGTTACAGTATTGCTACG GTATCTGTCTTTTTGTTCGAAGAGTAGCCGTAGACTTCCCCATGACGTTC CCTCACAGGGTCCCAGATCGTGGCCGTTTGAGGCATTTTGCGTTTTCAAC CACTCATACTGACATCTTTCATTGGTTGGCCGGTCGGTGCGGTCGATGCT AATAATGAACGCACAGCCACATCCACACGCGTCTTGGGGCTTTCGTTTCA AATATTACTCTGCGGCAGCACGGCCGCACTCACAGTGATGACCGTACGAC GGACTGTTATCGCTACCCACACATCCCTGTTGAAAAAGTATGTGAGCAGT CCGTCGCGAAAGCGTTTCGGCATCTAAACCAAGGGTCCCCTTGTCCCGTG AATCGTCGCATGAAGGTGCTCGAGATCGGAAATACCACCATGGTTGTATC GGTCCCTCGCGAGCTGAGCTCCGACCACTCGGCGGTGCTTCTTTTGGCGG AGGCTTCTGGTCGCATCACTGAAGCGGACATCTCGGAAAAGTTGCAGTGG GAGGGGGGCCGCCCGCGGAGGGTGCTAGACGAGCTCATGCAGGTATGAGA AAACTGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTTTTCCCGAGTCTCTGGCA GGGCGAGAGGTTGCTGGACGAGGACGTCGGCGATGGATAGAACGAATCTG TCATATTCTGTTGGCGCAAAGCGGTGTAGCTCGGAGAGTAGCCGTTGGCC GGCTTGGAGCGTGTGGCTTATCCCCCTTCTATCGCATCGGTACATAGCAC GCCAGGACACTCTCCAGCGGGTTATCGGACGTGCGTTGCAGCCGTAGGCG GCAAAGCTAGACATACGTTGAACGGATTTTGTTTGTCTCGTTCAGGTGCA CATGAGGACGGGCCCGTCATTGGTAAGTGTCGAGTGGAGCTTAGGCGCAC TCGTTGGTGACCTTTTGCGCCTTGTTCTCGTAAGTACGCACATTCTCAGA TGGCGGTATTTCGGGCCTACACCTCGCGTGTCTGTAGGTCCTAATAAACG TCTCAGCGGTGGCAGATCGAGGTGTTAGTCTTGGTGTTGCCACCGTGCGG TGGTCTCTTTCCTTTTTGGTACATCACTTTTCTTTTGGTCTTTCCATCAT TCCGGGCACCAGTCTACAACTTCGCCATATGCGTGACCCCCAGCCGGGGT CACGCAGGAGAAATTTGCAATCTTTCCTCCTTGGGTTGCTTGCTCTTGCT TTCAATTCGATCGCGAGCATAGTTAGCGATCTCTCTCTTTGTTGTTTGTT CCCCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8129:1100..5855-

>mRNA_Ecto-sp13_S_contig8129.19470.1 ID=mRNA_Ecto-sp13_S_contig8129.19470.1|Name=mRNA_Ecto-sp13_S_contig8129.19470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8129:1100..5855- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAAGACGAGGAGTTGGCGTGGGTGCGGTGAAGCGCAAAGAGAAGAA
CAAAGAGGCGTTTGAGGCGGTCGGCAAGAAAGTTGCGGAGGAGAACCTTA
GCCACATATCCGGCATGATGGCAACCTTCAAGGGTAGCCTGGAGGAGTTT
GCACGGAAATACAAGAAGGACATCAACCAGGATCCCGCTTTTCGACAGCA
GTTTCAAGTCATGTGTGCCAGCATCGGTGTGGACCCTCTGGCATCGAACA
AGGGCTTTTGGGCTGAAGTACTTGGCGTCGGCGATTTCTACTACGAACTT
GCGGTGCAGATTGTGGAGGTGTGCCTCGCGACCAGATCTGTGAACGGGGG
GCTTATGGCGTTGCCGGAGCTGCTGCAACGCCTCCGAGCGAAAGGAAACC
GAAAAAAACGCCAAGAAATATCCGCGGATGATGTCCGAAGAGCAACGTCG
AAGCTGCAGGTTCTCGGGAGCGGCTTTGCGGTGCTCGAGATCGGAAATAC
CACCATGGTTGTATCGGTCCCTCGCGAGCTGAGCTCCGACCACTCGGCGG
TGCTTCTTTTGGCGGAGGCTTCTGGTCGCATCACTGAAGCGGACATCTCG
GAAAAGTTGCAGTGGGAGGGGGGCCGCCCGCGGAGGGTGCTAGACGAGCT
CATGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTACTTTTTCCCGAGTCTCTGGCAG
GGCGAGAGGTTGCTGGACGAGGACGTCGGCGATGGATAG
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