mRNA_Ecto-sp13_S_contig8114.19458.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8114.19458.1
Unique NamemRNA_Ecto-sp13_S_contig8114.19458.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: D7FRF0_ECTSI (Tesmin-like, animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 4.160e-103
Identity = 158/163 (96.93%), Postives = 159/163 (97.55%), Query Frame = 1
Query:    1 PTPPLATKPASTSSGVKAETPAAVGVTGCGGGRDLLPVTCNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAVA 489
            PTPPLATKPASTS GVKAETPAAVG+ GCGGGRD L VTCNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAVA
Sbjct:  401 PTPPLATKPASTSRGVKAETPAAVGMAGCGGGRDPLSVTCNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAVA 563          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A6H5KNX0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX0_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 7.260e-98
Identity = 163/187 (87.17%), Postives = 166/187 (88.77%), Query Frame = 1
Query:    1 PTPPLATKP-ASTSSGVKAETPAAVGVTGCGGGRDLLPVTCNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAVAAPRTP-------PRMSPRVRGAV 537
            PTPPL TKP ASTSSGVKAETPAAVG+ GCGGGRD L VTCNCKKSKCLKLYCECFQRQQYC GCNC+ECLNTERTEDLRQLAIQGT+ERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPA               PRMSPRVRGAV
Sbjct:  640 PTPPLVTKPPASTSSGVKAETPAAVGLAGCGGGRDPLLVTCNCKKSKCLKLYCECFQRQQYCKGCNCMECLNTERTEDLRQLAIQGTMERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAXXXXXXXXXXXXXXXPRMSPRVRGAV 826          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A5J4YAE3_9CHLO (CRC domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAE3_9CHLO)

HSP 1 Score: 155 bits (392), Expect = 2.250e-42
Identity = 68/114 (59.65%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  118 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRA-------GKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEG 438
            CNCK S+CLKLYCECF   +YC+GCNCV C N    E  RQ A++  +ERNP AF  K +  A       G   HN GCNCKKS CLKKYCECFQAG+ CG NCKC++CKN+EG
Sbjct:   63 CNCKNSRCLKLYCECFASGRYCDGCNCVNCCNNMENESTRQSAVEAILERNPNAFRPKIQAGASEEGTVAGTARHNKGCNCKKSGCLKKYCECFQAGIYCGDNCKCIDCKNFEG 176          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A7S3YLM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLM9_HETAK)

HSP 1 Score: 148 bits (374), Expect = 4.120e-42
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  118 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRA-GKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKN 429
            CNCKKSKCLKLYCECF   +YC  CNCV+C N   TE  RQ AI+  +ERNP+AF SK  R A  K+ H+ GCNCKKS+CLKKYCECFQAGV C   CKC  C N
Sbjct:   46 CNCKKSKCLKLYCECFAAGKYCGACNCVDCQNAPATEAQRQDAIKAILERNPKAFSSKINREALHKQHHSTGCNCKKSSCLKKYCECFQAGVPCSARCKCAACLN 150          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A2P6TP82_CHLSO (Tesmin TSO1-like CXC 5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TP82_CHLSO)

HSP 1 Score: 155 bits (392), Expect = 3.920e-41
Identity = 73/127 (57.48%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  118 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKF-----ERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAA 483
            CNCK S+CLKLYCECF   +YC+GCNC  C N    E  RQ A++  +ERNP AF  K       R AG   HN GCNCKKS CLKKYCECFQAG+ C  NCKC++CKNYEG+     R A+ SP A
Sbjct:  133 CNCKNSRCLKLYCECFASGRYCDGCNCTNCYNNRDHEATRQAAVEAILERNPNAFRPKIAGGSDSRHAGGARHNKGCNCKKSGCLKKYCECFQAGIVCSDNCKCLDCKNYEGS---EAREALISPQA 256          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A087SIS7_AUXPR (Lin-54-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIS7_AUXPR)

HSP 1 Score: 150 bits (380), Expect = 7.710e-41
Identity = 70/130 (53.85%), Postives = 85/130 (65.38%), Query Frame = 1
Query:   91 GGRDLLPVT-------CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAF-------VSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEG 438
            GGR   P T       CNCK S+CLKLYCECF   +YC+GCNCV C N ++ E +RQ A++  ++RNP AF       V++     G   HN GCNCKKS CLKKYCECFQAG+ C  NCKC +CKNY+G
Sbjct:   24 GGRPRNPPTAANSKRHCNCKNSRCLKLYCECFASGRYCDGCNCVGCCNNQQNEGVRQSAVEAILDRNPNAFRPKIAGDVTEEGASLGAARHNKGCNCKKSGCLKKYCECFQAGIFCSENCKCCDCKNYDG 153          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A7S2SM18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM18_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.540e-40
Identity = 70/135 (51.85%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  118 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRA-GKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAVAAPRTPPRMSP 519
            CNCK SKCLKLYC+CF    YCNGCNC +C N    E  RQ A Q T+E+NP AF +K ++   G   H++GC+CKKS CLKKYCECF+A V CG  CKC++C+NY G+   ++R+A       A   TPP+  P
Sbjct:   27 CNCKNSKCLKLYCDCFASSIYCNGCNCKDCHNNPEHEAERQDARQSTLEKNPNAFQAKIKKGGQGGSEHSSGCHCKKSKCLKKYCECFEALVFCGEKCKCLDCENYAGSIALQERKAKCRDGRKAVSVTPPKQQP 161          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A2P6VRN3_9CHLO (Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRN3_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 2.480e-40
Identity = 71/125 (56.80%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  118 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFE-----RRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESP 477
            CNCK S+CLKLYCECF   +YC+ CNC+ C N    E  RQ A++  +ERNP AF  K       R +G   HN GCNCKKS CLKKYCECFQAG+AC  NCKC++CKNYEG+     R A+ SP
Sbjct:  122 CNCKNSRCLKLYCECFASGRYCDACNCLNCHNNRAHESTRQAAVEAILERNPNAFRPKIAGGSEGRHSGGARHNKGCNCKKSGCLKKYCECFQAGIACSDNCKCLDCKNYEGS---EAREALLSP 243          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: E1ZBA8_CHLVA (CRC domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZBA8_CHLVA)

HSP 1 Score: 154 bits (388), Expect = 3.050e-40
Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 1
Query:  118 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKF-----ERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEG 438
            CNCK S+CLKLYCECF   +YC+GCNC+ C N    E  RQ A++  +ERNP AF  K       RRAG   HN GCNCKKS CLKKYCECFQAG+ C   CKC++CKNYEG
Sbjct:  156 CNCKNSRCLKLYCECFASGRYCDGCNCLNCYNNREHEATRQSAVEAILERNPNAFRPKIAPGADNRRAGGARHNKGCNCKKSGCLKKYCECFQAGIVCSEICKCLDCKNYEG 267          
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Match: A0A0M0JDD9_9EUKA (Tesmin tso1-like cxc domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDD9_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 4.790e-40
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  115 TCNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAF---VSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKN 429
            TCNC+ S+CLKLYCECF   QYC GCNC  C N    ++LR+ AI+ T+ERN QAF   +S  E+ +   +HN GCNCKKS CLKKYCECFQAG+ C   CKCVNC N
Sbjct:   36 TCNCRNSRCLKLYCECFASGQYCYGCNCQSCFNNPENDELRKQAIESTLERNQQAFRPKISSTEQASS--AHNRGCNCKKSGCLKKYCECFQAGIKCADTCKCVNCLN 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8114.19458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRF0_ECTSI4.160e-10396.93Tesmin-like, animal TCX proteins are associated wi... [more]
A0A6H5KNX0_9PHAE7.260e-9887.17CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A5J4YAE3_9CHLO2.250e-4259.65CRC domain-containing protein n=1 Tax=Trebouxia sp... [more]
A0A7S3YLM9_HETAK4.120e-4264.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2P6TP82_CHLSO3.920e-4157.48Tesmin TSO1-like CXC 5 n=1 Tax=Chlorella sorokinia... [more]
A0A087SIS7_AUXPR7.710e-4153.85Lin-54-like protein n=2 Tax=Auxenochlorella protot... [more]
A0A7S2SM18_9STRA1.540e-4051.85Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2P6VRN3_9CHLO2.480e-4056.80Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conduc... [more]
E1ZBA8_CHLVA3.050e-4060.71CRC domain-containing protein n=1 Tax=Chlorella va... [more]
A0A0M0JDD9_9EUKA4.790e-4060.19Tesmin tso1-like cxc domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8114contigEcto-sp13_S_contig8114:5178..5722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score323.9
Seed ortholog evalue4.6e-86
Seed eggNOG ortholog2880.D7FRF0
Model size547
KEGG koko:K11600,ko:K21776
KEGG Pathwayko03018,ko04218,map03018,map04218
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG1171@1,KOG1171@2759
Cds size543
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464084.1764271-CDS-Ecto-sp13_S_contig8114:5177..57201681464084.1764271-CDS-Ecto-sp13_S_contig8114:5177..5720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8114 5178..5720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8114.19458.1prot_Ecto-sp13_S_contig8114.19458.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8114 5178..5720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8114.19458.1

>prot_Ecto-sp13_S_contig8114.19458.1 ID=prot_Ecto-sp13_S_contig8114.19458.1|Name=mRNA_Ecto-sp13_S_contig8114.19458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
PTPPLATKPASTSSGVKAETPAAVGVTGCGGGRDLLPVTCNCKKSKCLKL
YCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFER
RAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGG
RKRRAVESPAAVAAPRTPPRMSPRVRGAVVA
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mRNA from alignment at Ecto-sp13_S_contig8114:5178..5722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8114.19458.1 ID=mRNA_Ecto-sp13_S_contig8114.19458.1|Name=mRNA_Ecto-sp13_S_contig8114.19458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=545bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8114:5178..5722+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGACGCCGCCGTTGGCGACGAAGCCGGCGTCGACGTCGAGCGGCGTAAA GGCGGAGACGCCGGCGGCGGTAGGGGTGACGGGGTGCGGGGGAGGAAGAG ACCTGCTGCCGGTGACGTGCAACTGCAAGAAGTCCAAGTGCCTAAAGCTG TACTGCGAGTGCTTCCAGCGGCAGCAGTACTGCAACGGGTGTAACTGCGT GGAGTGCCTCAACACGGAGCGGACGGAGGACCTCCGGCAGCTGGCGATCC AGGGCACGATCGAGCGGAACCCCCAGGCGTTTGTGAGCAAGTTCGAGAGG CGCGCTGGCAAGCGCTCGCATAACGCGGGCTGCAACTGCAAGAAGTCTGC GTGCCTCAAGAAGTACTGCGAGTGCTTCCAGGCCGGCGTGGCGTGCGGCA CCAACTGCAAGTGCGTCAACTGCAAGAACTATGAGGGCGCCGCGGGGGGC AGGAAGCGCCGGGCGGTGGAGTCACCGGCGGCGGTGGCGGCGCCTCGAAC GCCGCCGCGCATGTCGCCGAGGGTACGGGGTGCGGTGGTGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8114:5178..5722+

>mRNA_Ecto-sp13_S_contig8114.19458.1 ID=mRNA_Ecto-sp13_S_contig8114.19458.1|Name=mRNA_Ecto-sp13_S_contig8114.19458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8114:5178..5722+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGACGCCGCCGTTGGCGACGAAGCCGGCGTCGACGTCGAGCGGCGTAAA
GGCGGAGACGCCGGCGGCGGTAGGGGTGACGGGGTGCGGGGGAGGAAGAG
ACCTGCTGCCGGTGACGTGCAACTGCAAGAAGTCCAAGTGCCTAAAGCTG
TACTGCGAGTGCTTCCAGCGGCAGCAGTACTGCAACGGGTGTAACTGCGT
GGAGTGCCTCAACACGGAGCGGACGGAGGACCTCCGGCAGCTGGCGATCC
AGGGCACGATCGAGCGGAACCCCCAGGCGTTTGTGAGCAAGTTCGAGAGG
CGCGCTGGCAAGCGCTCGCATAACGCGGGCTGCAACTGCAAGAAGTCTGC
GTGCCTCAAGAAGTACTGCGAGTGCTTCCAGGCCGGCGTGGCGTGCGGCA
CCAACTGCAAGTGCGTCAACTGCAAGAACTATGAGGGCGCCGCGGGGGGC
AGGAAGCGCCGGGCGGTGGAGTCACCGGCGGCGGTGGCGGCGCCTCGAAC
GCCGCCGCGCATGTCGCCGAGGGTACGGGGTGCGGTGGTGGCG
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