mRNA_Ecto-sp13_S_contig8090.19434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: D7FTL9_ECTSI (Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL9_ECTSI) HSP 1 Score: 233 bits (593), Expect = 1.770e-68 Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 1
Query: 13 QGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
+GGTVEVA HTLSADDLMLKRGFKGDTSVFQAAVSEDG VMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTK+GVAGAAVAANAALVADAVRCMPLPA+RMPEHAVPLGHE
Sbjct: 956 EGGTVEVAGHTLSADDLMLKRGFKGDTSVFQAAVSEDGKVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKDGVAGAAVAANAALVADAVRCMPLPASRMPEHAVPLGHE 1083
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: W7U130_9STRA (Isoleucine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U130_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.410e-29 Identity = 63/127 (49.61%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRM-PEHAVPLGHE 396
G++ +A + LS+++L+LK+ FKGDTS+FQA S+DG ++VVLDTR+DE+VL+Q ARE+V+R+QKLRK+ GL++ + VE++++ + K + A+A+NAA+V +R PLPA+ + P HAV LG E
Sbjct: 972 GSLTLAGYELSSEELLLKKEFKGDTSIFQAEASQDGTLLVVLDTRQDERVLAQATARELVNRVQKLRKRVGLKLSDVVEIYYETEDKGMIE--AIASNAAMVRSTLRVFPLPASTLKPTHAVELGKE 1096
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: A0A835YUB7_9STRA (Isoleucyl-tRNA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB7_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.940e-25 Identity = 62/142 (43.66%), Postives = 90/142 (63.38%), Query Frame = 1
Query: 19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKK---------------------SGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRM-PEHA 378
GT++VA TLSA++L+++R F+GD +V++A VS+DG V+VVLDTR+DE+VL Q+ ARE ++R+QKLRK +GL +G+ VEVFF + AA+AA+ A++ DA +PLPA P HA
Sbjct: 1323 GTIDVAGATLSAEELLVRRAFRGDAAVYEACVSDDGGVVVVLDTRRDERVLQQRTAREALNRVQKLRKXXXXXXXXXXXXXXXXXXXXXXAGLNMGDKVEVFFSESAGSTTLSAAIAAHVAMIRDATGSVPLPAAAFQPPHA 1464
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: A0A662Y5V2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5V2_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.410e-24 Identity = 56/127 (44.09%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKE-GVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
G+V + H LS DDLM+KR FKGD +F+A VS +G++MVV+DTR+DE++ Q ARE+++R+QKLRKK+GL V + + VFF + + G A+ + ++A A+ P P PEH+V + E
Sbjct: 27 GSVTLDGHELSGDDLMVKREFKGDAKIFEADVSPEGSLMVVIDTREDEQLKMQGCAREVITRVQKLRKKAGLVVQDKIHVFFAETGGDKGPISTAIQSFLPMIASALGTTPAPLALQPEHSVTIVTE 153
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: M4BBV1_HYAAE (Isoleucine--tRNA ligase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BBV1_HYAAE) HSP 1 Score: 106 bits (265), Expect = 3.460e-24 Identity = 54/127 (42.52%), Postives = 86/127 (67.72%), Query Frame = 1
Query: 19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDT-KEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
G+V + H L+ DDL++KR FKGDT V++A VS G++MVV+DTR+DE++ Q ARE+++R+QKLRKK+GL V + + V+F++ EG A+ ++ ++A + P P + P H+VP+ E
Sbjct: 949 GSVTIDGHELTGDDLLVKREFKGDTKVYEAGVSPKGDLMVVIDTREDEQLKMQGCAREVITRVQKLRKKAGLVVQDKIHVYFEEKNGDEGPISKAIQSSLPMIASTLGTAPAPVSLQPAHSVPIVSE 1075
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: W2Q337_PHYPN (Isoleucine--tRNA ligase n=29 Tax=Peronosporaceae TaxID=4777 RepID=W2Q337_PHYPN) HSP 1 Score: 105 bits (263), Expect = 6.440e-24 Identity = 50/126 (39.68%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
G+V + H L+ +DL++KR FKGD+ +F+A VS +GN+MV++DTR+DE++ Q ARE+++R+QKLRKK+GL V + + V+F++ +G A+ +++ + P P + P+H+VP+ E
Sbjct: 949 GSVTIDGHELTGEDLVVKREFKGDSKIFEADVSPEGNLMVIIDTREDEELKMQGCAREVITRVQKLRKKAGLVVQDKIHVYFEEKGGKGPISTAIQTFLPMISSTLGTAPAPLSLQPQHSVPIVSE 1074
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: H3H8Z1_PHYRM (Anticodon_1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3H8Z1_PHYRM) HSP 1 Score: 103 bits (256), Expect = 2.920e-23 Identity = 54/127 (42.52%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKE-GVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
G+V + H LS DDL +KR FKGD +F+A VS +GN+MV++DTR+DE++ Q ARE+++R+QKLRKK+GL V + + V+F++ E G A+ + ++A A+ P P + P ++VP+ E
Sbjct: 226 GSVTLDGHELSGDDLQVKREFKGDAKIFEADVSPEGNLMVIIDTREDEELKMQGCARELITRVQKLRKKAGLVVQDKIHVYFEEKGGEKGPISTAIQSFLPMIASALGTAPAPLSLQPAYSVPIVSE 352
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: D7FZ98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ98_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.190e-22 Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 1 LERCQGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREI 195
LER +GGTV+V HT SA DLMLKR +KGD S+ QAAVSEDG VMV LDTR+D KVLSQKLAREI
Sbjct: 9 LERVEGGTVDVTGHTPSAADLMLKRDYKGDKSISQAAVSEDGKVMVALDTREDAKVLSQKLAREI 73
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: A0A2D4BRB4_PYTIN (Isoleucine--tRNA ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRB4_PYTIN) HSP 1 Score: 100 bits (250), Expect = 3.630e-22 Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 1
Query: 13 QGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
Q ++ + H LS DDL++ R FKGD +++A VS + N+MVVLDTR+DE++ Q ARE ++R+QKLRKK+GL+V + + VFFQ+ + AAV AA+VA A+ +P P H+V + E
Sbjct: 944 QNKSITIDGHELSGDDLIVIREFKGDKKIYEANVSLESNLMVVLDTREDEQLKQQGCAREFITRVQKLRKKAGLEVQDKIHVFFQEADGQSTITAAVKEFAAMVAGALGSVPALLALKPAHSVTIISE 1071
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: W4GBP6_9STRA (Isoleucine--tRNA ligase n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBP6_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.260e-21 Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 1
Query: 46 LSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQD-DTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
LS DDL++KR FKGD S+++A VS DG +MVV+D R+D+ + SQ ARE V+R+QKLRKK+GL VG+ V V+FQ+ D G AV A VA + +P P + P ++V + E
Sbjct: 965 LSGDDLLVKRDFKGDKSIYEADVSPDGRLMVVIDVREDDALRSQGFAREFVNRVQKLRKKAGLVVGDKVHVYFQEGDANAGPISQAVEQFVATVAGTLGTVPAPLSLKPHNSVTIVSE 1082 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8090.19434.1 >prot_Ecto-sp13_S_contig8090.19434.1 ID=prot_Ecto-sp13_S_contig8090.19434.1|Name=mRNA_Ecto-sp13_S_contig8090.19434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp LERCQGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTback to top mRNA from alignment at Ecto-sp13_S_contig8090:6230..7054- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8090.19434.1 ID=mRNA_Ecto-sp13_S_contig8090.19434.1|Name=mRNA_Ecto-sp13_S_contig8090.19434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8090:6230..7054- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8090:6230..7054- >mRNA_Ecto-sp13_S_contig8090.19434.1 ID=mRNA_Ecto-sp13_S_contig8090.19434.1|Name=mRNA_Ecto-sp13_S_contig8090.19434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8090:6230..7054- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |