mRNA_Ecto-sp13_S_contig8090.19434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8090.19434.1
Unique NamemRNA_Ecto-sp13_S_contig8090.19434.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: D7FTL9_ECTSI (Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL9_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.770e-68
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 1
Query:   13 QGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
            +GGTVEVA HTLSADDLMLKRGFKGDTSVFQAAVSEDG VMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTK+GVAGAAVAANAALVADAVRCMPLPA+RMPEHAVPLGHE
Sbjct:  956 EGGTVEVAGHTLSADDLMLKRGFKGDTSVFQAAVSEDGKVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKDGVAGAAVAANAALVADAVRCMPLPASRMPEHAVPLGHE 1083          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: W7U130_9STRA (Isoleucine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U130_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.410e-29
Identity = 63/127 (49.61%), Postives = 98/127 (77.17%), Query Frame = 1
Query:   19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRM-PEHAVPLGHE 396
            G++ +A + LS+++L+LK+ FKGDTS+FQA  S+DG ++VVLDTR+DE+VL+Q  ARE+V+R+QKLRK+ GL++ + VE++++ + K  +   A+A+NAA+V   +R  PLPA+ + P HAV LG E
Sbjct:  972 GSLTLAGYELSSEELLLKKEFKGDTSIFQAEASQDGTLLVVLDTRQDERVLAQATARELVNRVQKLRKRVGLKLSDVVEIYYETEDKGMIE--AIASNAAMVRSTLRVFPLPASTLKPTHAVELGKE 1096          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: A0A835YUB7_9STRA (Isoleucyl-tRNA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.940e-25
Identity = 62/142 (43.66%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKK---------------------SGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRM-PEHA 378
            GT++VA  TLSA++L+++R F+GD +V++A VS+DG V+VVLDTR+DE+VL Q+ ARE ++R+QKLRK                      +GL +G+ VEVFF +        AA+AA+ A++ DA   +PLPA    P HA
Sbjct: 1323 GTIDVAGATLSAEELLVRRAFRGDAAVYEACVSDDGGVVVVLDTRRDERVLQQRTAREALNRVQKLRKXXXXXXXXXXXXXXXXXXXXXXAGLNMGDKVEVFFSESAGSTTLSAAIAAHVAMIRDATGSVPLPAAAFQPPHA 1464          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: A0A662Y5V2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5V2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.410e-24
Identity = 56/127 (44.09%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKE-GVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
            G+V +  H LS DDLM+KR FKGD  +F+A VS +G++MVV+DTR+DE++  Q  ARE+++R+QKLRKK+GL V + + VFF +   + G    A+ +   ++A A+   P P    PEH+V +  E
Sbjct:   27 GSVTLDGHELSGDDLMVKREFKGDAKIFEADVSPEGSLMVVIDTREDEQLKMQGCAREVITRVQKLRKKAGLVVQDKIHVFFAETGGDKGPISTAIQSFLPMIASALGTTPAPLALQPEHSVTIVTE 153          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: M4BBV1_HYAAE (Isoleucine--tRNA ligase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BBV1_HYAAE)

HSP 1 Score: 106 bits (265), Expect = 3.460e-24
Identity = 54/127 (42.52%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDT-KEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
            G+V +  H L+ DDL++KR FKGDT V++A VS  G++MVV+DTR+DE++  Q  ARE+++R+QKLRKK+GL V + + V+F++    EG    A+ ++  ++A  +   P P +  P H+VP+  E
Sbjct:  949 GSVTIDGHELTGDDLLVKREFKGDTKVYEAGVSPKGDLMVVIDTREDEQLKMQGCAREVITRVQKLRKKAGLVVQDKIHVYFEEKNGDEGPISKAIQSSLPMIASTLGTAPAPVSLQPAHSVPIVSE 1075          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: W2Q337_PHYPN (Isoleucine--tRNA ligase n=29 Tax=Peronosporaceae TaxID=4777 RepID=W2Q337_PHYPN)

HSP 1 Score: 105 bits (263), Expect = 6.440e-24
Identity = 50/126 (39.68%), Postives = 86/126 (68.25%), Query Frame = 1
Query:   19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
            G+V +  H L+ +DL++KR FKGD+ +F+A VS +GN+MV++DTR+DE++  Q  ARE+++R+QKLRKK+GL V + + V+F++   +G    A+     +++  +   P P +  P+H+VP+  E
Sbjct:  949 GSVTIDGHELTGEDLVVKREFKGDSKIFEADVSPEGNLMVIIDTREDEELKMQGCAREVITRVQKLRKKAGLVVQDKIHVYFEEKGGKGPISTAIQTFLPMISSTLGTAPAPLSLQPQHSVPIVSE 1074          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: H3H8Z1_PHYRM (Anticodon_1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3H8Z1_PHYRM)

HSP 1 Score: 103 bits (256), Expect = 2.920e-23
Identity = 54/127 (42.52%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   19 GTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKE-GVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
            G+V +  H LS DDL +KR FKGD  +F+A VS +GN+MV++DTR+DE++  Q  ARE+++R+QKLRKK+GL V + + V+F++   E G    A+ +   ++A A+   P P +  P ++VP+  E
Sbjct:  226 GSVTLDGHELSGDDLQVKREFKGDAKIFEADVSPEGNLMVIIDTREDEELKMQGCARELITRVQKLRKKAGLVVQDKIHVYFEEKGGEKGPISTAIQSFLPMIASALGTAPAPLSLQPAYSVPIVSE 352          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: D7FZ98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ98_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.190e-22
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 LERCQGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREI 195
            LER +GGTV+V  HT SA DLMLKR +KGD S+ QAAVSEDG VMV LDTR+D KVLSQKLAREI
Sbjct:    9 LERVEGGTVDVTGHTPSAADLMLKRDYKGDKSISQAAVSEDGKVMVALDTREDAKVLSQKLAREI 73          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: A0A2D4BRB4_PYTIN (Isoleucine--tRNA ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRB4_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 3.630e-22
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   13 QGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
            Q  ++ +  H LS DDL++ R FKGD  +++A VS + N+MVVLDTR+DE++  Q  ARE ++R+QKLRKK+GL+V + + VFFQ+   +    AAV   AA+VA A+  +P      P H+V +  E
Sbjct:  944 QNKSITIDGHELSGDDLIVIREFKGDKKIYEANVSLESNLMVVLDTREDEQLKQQGCAREFITRVQKLRKKAGLEVQDKIHVFFQEADGQSTITAAVKEFAAMVAGALGSVPALLALKPAHSVTIISE 1071          
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Match: W4GBP6_9STRA (Isoleucine--tRNA ligase n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBP6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.260e-21
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   46 LSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDTRKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQD-DTKEGVAGAAVAANAALVADAVRCMPLPATRMPEHAVPLGHE 396
            LS DDL++KR FKGD S+++A VS DG +MVV+D R+D+ + SQ  ARE V+R+QKLRKK+GL VG+ V V+FQ+ D   G    AV    A VA  +  +P P +  P ++V +  E
Sbjct:  965 LSGDDLLVKRDFKGDKSIYEADVSPDGRLMVVIDVREDDALRSQGFAREFVNRVQKLRKKAGLVVGDKVHVYFQEGDANAGPISQAVEQFVATVAGTLGTVPAPLSLKPHNSVTIVSE 1082          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8090.19434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTL9_ECTSI1.770e-6896.09Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
W7U130_9STRA1.410e-2949.61Isoleucine--tRNA ligase n=2 Tax=Monodopsidaceae Ta... [more]
A0A835YUB7_9STRA2.940e-2543.66Isoleucyl-tRNA synthetase n=1 Tax=Tribonema minus ... [more]
A0A662Y5V2_9STRA1.410e-2444.09Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
M4BBV1_HYAAE3.460e-2442.52Isoleucine--tRNA ligase n=1 Tax=Hyaloperonospora a... [more]
W2Q337_PHYPN6.440e-2439.68Isoleucine--tRNA ligase n=29 Tax=Peronosporaceae T... [more]
H3H8Z1_PHYRM2.920e-2342.52Anticodon_1 domain-containing protein n=2 Tax=Phyt... [more]
D7FZ98_ECTSI1.190e-2275.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BRB4_PYTIN3.630e-2243.75Isoleucine--tRNA ligase n=1 Tax=Pythium insidiosum... [more]
W4GBP6_9STRA1.260e-2147.46Isoleucine--tRNA ligase n=10 Tax=Aphanomyces astac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8090contigEcto-sp13_S_contig8090:6230..7054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score233.8
Seed ortholog evalue4.6e-59
Seed eggNOG ortholog2880.D7FTL9
Preferred nameILERS
Model size396
KEGG rclassRC00055,RC00523
KEGG koko:K01870
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0019899,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0051020,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGsCOG0060@1,KOG0434@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009060.1
EC6.1.1.5
Cds size396
COG Functional cat.J
BiGG ReactioniRC1080.CRv4_Au5_s16_g6096_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464082.1027853-CDS-Ecto-sp13_S_contig8090:6229..63701681464082.1027853-CDS-Ecto-sp13_S_contig8090:6229..6370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8090 6230..6370 -
1681464082.1181958-CDS-Ecto-sp13_S_contig8090:6799..70541681464082.1181958-CDS-Ecto-sp13_S_contig8090:6799..7054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8090 6800..7054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8090.19434.1prot_Ecto-sp13_S_contig8090.19434.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8090 6230..7054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8090.19434.1

>prot_Ecto-sp13_S_contig8090.19434.1 ID=prot_Ecto-sp13_S_contig8090.19434.1|Name=mRNA_Ecto-sp13_S_contig8090.19434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
LERCQGGTVEVAEHTLSADDLMLKRGFKGDTSVFQAAVSEDGNVMVVLDT
RKDEKVLSQKLAREIVSRIQKLRKKSGLQVGETVEVFFQDDTKEGVAGAA
VAANAALVADAVRCMPLPATRMPEHAVPLGHE
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mRNA from alignment at Ecto-sp13_S_contig8090:6230..7054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8090.19434.1 ID=mRNA_Ecto-sp13_S_contig8090.19434.1|Name=mRNA_Ecto-sp13_S_contig8090.19434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8090:6230..7054- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAACGTTGTCAGGGAGGCACCGTAGAAGTGGCGGAACACACCCTCTC CGCCGACGACCTGATGCTGAAGAGAGGGTTTAAGGGAGACACGAGCGTCT TTCAAGCCGCCGTGTCGGAGGACGGGAACGTGATGGTGGTCCTCGACACG CGTAAGGACGAGAAGGTCTTGTCGCAGAAGCTCGCCCGAGAGATCGTCAG CCGCATACAGAAGCTCAGGAAGAAGTCCGGCCTCCAAGTCGGGGAAACCG TCGAGGTGTGTACTTCTTGGTTGGAATGTTTTTTCCCCTCACCTTGTCGT CTTAAATGTTGTACCCTTTCCAGTCTCCCCTCAGCACCTTCTTTCATTTC GTGTCTTGCGATTGCCCCTACACGAAATACCAGTATGTGCAGGGTGTTTC TGGAGGGTGAGAGATGGCATCGCCGAAGTTGACGTGCACTCTGGTACCCC GTGTAGTGGAATCAGACGAACAACTGCTGTGTGCACCTTGTATATCATTC TCGTGATCGTCGTTGTCTTGTGGGTATGACGAGAGAATTTCACGTGACAA GAACGACAAGTTATACGTATGCGTACTTGGGGCAGAAAATTATGCACCCA TGCCGACCACTCCACAAGAAATGTGTCGTCATTTTTTATCCTTCCCATCG GTTGACCCGCTTGTTTGTTTTTGTGCTTTCGCAGGTGTTCTTCCAGGACG ACACCAAGGAGGGCGTCGCGGGGGCAGCGGTGGCCGCCAACGCCGCTCTC GTCGCGGACGCCGTTCGGTGTATGCCGCTGCCGGCCACGAGGATGCCGGA GCACGCCGTTCCGCTGGGGCACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8090:6230..7054-

>mRNA_Ecto-sp13_S_contig8090.19434.1 ID=mRNA_Ecto-sp13_S_contig8090.19434.1|Name=mRNA_Ecto-sp13_S_contig8090.19434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8090:6230..7054- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAACGTTGTCAGGGAGGCACCGTAGAAGTGGCGGAACACACCCTCTC
CGCCGACGACCTGATGCTGAAGAGAGGGTTTAAGGGAGACACGAGCGTCT
TTCAAGCCGCCGTGTCGGAGGACGGGAACGTGATGGTGGTCCTCGACACG
CGTAAGGACGAGAAGGTCTTGTCGCAGAAGCTCGCCCGAGAGATCGTCAG
CCGCATACAGAAGCTCAGGAAGAAGTCCGGCCTCCAAGTCGGGGAAACCG
TCGAGGTGTTCTTCCAGGACGACACCAAGGAGGGCGTCGCGGGGGCAGCG
GTGGCCGCCAACGCCGCTCTCGTCGCGGACGCCGTTCGGTGTATGCCGCT
GCCGGCCACGAGGATGCCGGAGCACGCCGTTCCGCTGGGGCACGAG
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