mRNA_Ecto-sp13_S_contig809.19430.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig809.19430.1
Unique NamemRNA_Ecto-sp13_S_contig809.19430.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig809.19430.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.930e-43
Identity = 76/145 (52.41%), Postives = 106/145 (73.10%), Query Frame = 3 
Query:   18 GDKTITSGGSTWMPCNICTVTRKDLGNGQFNFAKNMRTLDGIDYSLSLIRKEPSASKRAKISKDTGVVGADTRNPIRENICINVIKSAGVDIFHQDAMNSFKRAFKAVLDGLNPEGQAVVSALAKDPALRIEGSEP*KTYFARAG 452
            G+  + SG  T+ PCN+C VT+ +LG+GQ++ A N R +DGID+SLSL+RKE + +K+  +S   GVVGA  RNP+RE++ +N +KS GVDI HQD +NSF RA KA++DGL+P G+  ++AL KDP+LRI GSEP K   +  G
Sbjct:  415 GEPVVRSGSGTFKPCNVCNVTQDELGDGQYDIAGNARMMDGIDHSLSLVRKEATKTKQGIVSTREGVVGAFVRNPVREHLHLNPVKSIGVDIMHQDPLNSFGRAMKAMVDGLSPAGRTWLAALVKDPSLRISGSEPLKDIVSEGG 559
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BLAST of mRNA_Ecto-sp13_S_contig809.19430.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.550e-27
Identity = 54/150 (36.00%), Postives = 98/150 (65.33%), Query Frame = 3 
Query:    6 RLRIGDKTITSGGSTWMPCNICTVTRKDLGNGQFNFAKNMRTLDGIDYSLSLIRKEPSASKRAKISKDTGVVGADTRNPIRENICINVIKSAGVDIFHQDAMNSFKRAFKAVLDGLNP-EGQAVVSALAKDPALRIEGSEP*KTYFARAG 452
            +L +G K +T+   T MPC++C + ++DL +G ++  +N RT D  +Y+L +I   P+ ++R  +S   GV   +  NP R+++ +N++++ G+D+FHQDA NS ++ FK +L GL+  +G  ++S LAKDP+LR+ G+ P + + +  G
Sbjct:  583 QLLLGMKRVTN--KTLMPCHVCPIGQEDLADGNYDIVRNRRTDDQTEYALKVISTAPTGTQRQALSSKHGVTPQEVENPFRKHVHLNMVRTFGIDLFHQDAQNSLRKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGG 730
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BLAST of mRNA_Ecto-sp13_S_contig809.19430.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.290e-20
Identity = 45/130 (34.62%), Postives = 80/130 (61.54%), Query Frame = 3 
Query:   66 ICTVTRKDLGNGQFNFAKNMRTLDGIDYSLSLIRKEPSASKRAKISKDTGVVGADTRNPIRENICINVIKSAGVDIFHQDAMNSFKRAFKAVLDGLNP-EGQAVVSALAKDPALRIEGSEP*KTYFARAG 452
            I     +DL +G ++  +N RT D  +Y+L +I    + ++R  +S   GV   +  NP R+++ +N++++ G+D+FHQDA NS  + FK +L GL+  +G  ++S LAKDP+LR+ G+ P + + +  G
Sbjct:  507 IADKVEEDLADGNYDIVRNRRTDDQTEYALKVISTATTGTQRQALSSKHGVTPQEVENPFRKHVHLNMVRTFGIDVFHQDAQNSLLKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGG 636
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig809.19430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KYQ6_9PHAE3.930e-4352.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH2_ECTSI1.550e-2736.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW6_ECTSI3.290e-2034.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig809contigEcto-sp13_S_contig809:11199..13679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size744
Hectar predicted targeting categoryother localisation
Exons4
Cds size375
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig809.19430.1prot_Ecto-sp13_S_contig809.19430.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig809 11908..12848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.8460188-UTR-Ecto-sp13_S_contig809:11198..112331681464081.8460188-UTR-Ecto-sp13_S_contig809:11198..11233Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig809 11199..11233 +
1681464081.8573122-UTR-Ecto-sp13_S_contig809:11889..119071681464081.8573122-UTR-Ecto-sp13_S_contig809:11889..11907Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig809 11890..11907 +
1681464081.8992674-UTR-Ecto-sp13_S_contig809:12848..129611681464081.8992674-UTR-Ecto-sp13_S_contig809:12848..12961Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig809 12849..12961 +
1681464081.9128077-UTR-Ecto-sp13_S_contig809:13476..136791681464081.9128077-UTR-Ecto-sp13_S_contig809:13476..13679Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig809 13477..13679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.8687997-CDS-Ecto-sp13_S_contig809:11907..121651681464081.8687997-CDS-Ecto-sp13_S_contig809:11907..12165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig809 11908..12165 +
1681464081.8798063-CDS-Ecto-sp13_S_contig809:12731..128481681464081.8798063-CDS-Ecto-sp13_S_contig809:12731..12848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig809 12732..12848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig809.19430.1

>prot_Ecto-sp13_S_contig809.19430.1 ID=prot_Ecto-sp13_S_contig809.19430.1|Name=mRNA_Ecto-sp13_S_contig809.19430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MPCNICTVTRKDLGNGQFNFAKNMRTLDGIDYSLSLIRKEPSASKRAKIS
KDTGVVGADTRNPIRENICINVIKSAGVDIFHQDAMNSFKRAFKAVLDGL
NPEGQAVVSALAKDPALRIEGSEP*
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mRNA from alignment at Ecto-sp13_S_contig809:11199..13679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig809.19430.1 ID=mRNA_Ecto-sp13_S_contig809.19430.1|Name=mRNA_Ecto-sp13_S_contig809.19430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig809:11199..13679+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGCGGCTGCGAATCGGCGACAAAACGATCACTGTGAGAAAAGGTCGT
GCTTGCTTGTATGTTAACATGGTTTGTTTCCGTTCTTGAGTTTGACTTTT
TTATCTTAACTGAATGACATCCGGTTGTTGCAGCGCACTCTTTTGTCTCC
CGGTTTGAATGACGCTGTCCAATTAACGTTTTCTCATGCCTAAATGGTGT
TTATAGGGGTATCTGGAGTATGTTGGTCCGCATGGTGCATGATGACCACA
GCAGTATGGGTTCGAGTTTTGAACGCTGATTTTCTTCAGTATTTATGCTG
ATTGTTGGCGAAACCAAGAATCAAAACATCGGCAGCGAACATCGATCACA
ACCGGAATTACCGCCATACAATTACATTCCCGCCGGACGCTTTCCGCCGT
ACTTTGGGTGTAGGGCCGTCTTGCAATGCGGCCCCGCCTGTGTCCGCCCC
AGAAATCGGTGCCGGCGACAACGGTGGTTTTACCAAAGAGGTTGCGCTGG
TGCATGCGAAGCGAGACGATGTATGCATACAACCTATAACAGAATACGCG
CGTGACTTACAAGTGCACAACGCACCTGCCGCCCGCTCTCCAACCTACCG
CACATGCTAACGGCAGGTATTTTTTCGATCGGGCGTGGTAGCAATCAACG
GCGACTCCCCCGTGCAACACGTGATCTGCAACTGCAAGCAGTCCGGCGGC
AGCACCTGGATGCCGTGCAACATCTGCACCGTGACCCGGAAGGACCTGGG
CAACGGACAGTTCAACTTCGCCAAGAACATGAGGACGTTGGATGGGATCG
ACTACTCGTTGAGCCTGATCCGGAAGGAGCCCAGTGCGAGTAAGAGGGCC
AAGATTTCCAAGGACACAGGGGTGGTTGGCGCTGACACACGCAACCCCAT
CCGCGAAAACATCTGCATCAACGTGATCAAGTCCGCGGGGGTCGACATTT
TCCACCAAGATGCCATGGTGAGGTGATACCATCTTGGTCAATCCGTTGCC
TCACTGCGCCCGCATTTTTCGTTTTTCCCGATGTAAATATATCGGCTTTT
TTTTTCTACCTGTTGGGGGGCGTTGGGCAGGGTAGAGGGGGGGGGAGGGT
GCGTACACACACTTGGGTGTGTTGCCCAGAATGACGCGCTCTCCGTATCC
TGCACTCAATCTGAATGTTAAGGGGCTATTGGGCCATCGTTGTCCCTCTT
GTAAGCTGCGTGTGGCATCTGTGTCGACGAAGGGCTGCTGTTGATGCATG
CAGGGCCCGGCCGAGTCGGACCAAATTACACAACGCTCATGTCAGCCGAC
GGGTTCACGTTTCACGATTTCTGTGATGCGGATTGAAGATGGACCGCTGC
AACCTGGCCTTTCGAGTAGCGCTGTCGCAAGAGAGCGCCCGTTTGGGACG
TTCGATGACGGCCCTACCGGACCTACTTGTCAACTGCACTAGGAAATCAA
CCACAGAGCACCGCACATTTTTGTTGTTTTTGTTTTTTCGTTGTGCACCT
ATCGGCCGTGACCTCACTGCTATTTGCGCTCAGAACTCCTTCAAGAGGGC
CTTCAAAGCGGTGCTGGACGGGCTGAACCCCGAGGGACAGGCCGTTGTTT
CTGCTCTCGCGAAGGATCCGGCGCTTCGGATCGAAGGGAGTGAACCCTGA
AAGACATACTTCGCGAGGGCGGGTGGACGTCGCAGACTGGGATGGACGTC
TGGAGGCTAGCAGGCGTAGCGCTTGTGCTCTTGAGACCTGTGCTCGCGAG
CGTGCCTTCCATGGTGAGAGCTGTCGGTTGTCCCCGGGATCACATGTTGT
CGTCGGCGAGACAGATGAGAAAGAGGGAGGGAGAAAGGGGAGGGGATGAG
GGATGGGGGGAAGGGGAGAAGCAACAGGGTGGGCAAGCAGGTGACTGCTC
TGGTGGAAAGCGCGTGTCAGCTGAACCCGAGGCTGGTAATGGTCTTACGT
TATCGTGTTCAGGTATGTTTCGCTGTGTATGTAGTTCCACCCTAAAGCTT
TGTTCGTTTCGCTATTTTCTTTGTAAACAAACGGTGACAACGGGAGCCCG
CGTCGACCGGCCAGTCTATAAACCAGCAGACTTCCCGACCTGTTTCGTGT
ATTGCCATGGCCATCGCAGAATCGCCCTTTCGCAGATGATCGGCGGTAGA
AGTTGGTGGTGGTTGTCCGCCCCGAAAAACCTTGTACGAGACTGCTGTTT
TGCCGTTGACATCGCCGTACACACGTGACAATTGTTTGTGTTCTTGCCTC
CATCGTCCGAACCCCGTGCGCGGCATAGAACAAGCACATGCGGACTGCTT
TCTTGGAGGACGTTGCTAGACGGCTGGAGCCGGCGGATGGCGATGTTGTA
CGAGACCGGGAACTTCTAGGGAAGCTGCGGCACCTGCTGTTTGCAATCTC
ACATGCTTCACACTTGCTGAGACTTCGCTCCTTCGGCACCGAAGACGCCG
GGCGCCTCCTGGCGGCGCAGCGGGCAAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig809:11199..13679+

>mRNA_Ecto-sp13_S_contig809.19430.1 ID=mRNA_Ecto-sp13_S_contig809.19430.1|Name=mRNA_Ecto-sp13_S_contig809.19430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig809:11199..13679+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGCAACATCTGCACCGTGACCCGGAAGGACCTGGGCAACGGACA
GTTCAACTTCGCCAAGAACATGAGGACGTTGGATGGGATCGACTACTCGT
TGAGCCTGATCCGGAAGGAGCCCAGTGCGAGTAAGAGGGCCAAGATTTCC
AAGGACACAGGGGTGGTTGGCGCTGACACACGCAACCCCATCCGCGAAAA
CATCTGCATCAACGTGATCAAGTCCGCGGGGGTCGACATTTTCCACCAAG
ATGCCATGAACTCCTTCAAGAGGGCCTTCAAAGCGGTGCTGGACGGGCTG
AACCCCGAGGGACAGGCCGTTGTTTCTGCTCTCGCGAAGGATCCGGCGCT
TCGGATCGAAGGGAGTGAACCCTGA
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