mRNA_Ecto-sp13_S_contig809.19429.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig809.19429.1
Unique NamemRNA_Ecto-sp13_S_contig809.19429.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig809.19429.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE)

HSP 1 Score: 461 bits (1186), Expect = 2.990e-153
Identity = 259/276 (93.84%), Postives = 260/276 (94.20%), Query Frame = 3 
Query:    3 SPGTVSDLLASREGHVLTAEEGVDNGVVGEHIMPVATTPLGGLRRGFLHGRIAASSALMSIESLRVGPDGGXXXXXXXXXXXXXXXXXXXXXLPHRLAAVTWDXXXXRLMARVNPFLTTEAXXXXXXXXVEEERQPLVWEVVTDDGGERVDLTRITTRCDVIPLAQEAGAGSSARRLYTCVGFIRPGRSKGIFRKVWAPAGKPRLLAWRFAGLDNLFFDRRAKGVFANTSQLPVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRL 830
            SPGTVSDLLASREGHVLTAEEG DNGVVGEHIMPVATTPLGGLRRGFLHGRIAASSALMSIESLRVGPDGGXXXXXXXXXXXXXXXXXXXX LPHRLAAVTWD    RL+ARVNPFLTTEA        VEEER PLVWEVVTDDGGERVDLTRITTRCDVIPLAQEAGAGSSARRLYTC GFIRPGRSKGIFRKVWAPAGKPRLLAWRFAGLDNLFFDRRAKGVFANTSQLPVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRL
Sbjct:  132 SPGTVSDLLASREGHVLTAEEGADNGVVGEHIMPVATTPLGGLRRGFLHGRIAASSALMSIESLRVGPDGGXXXXXXXXXXXXXXXXXXXXQLPHRLAAVTWDEEEERLVARVNPFLTTEAALLNNPPAVEEERLPLVWEVVTDDGGERVDLTRITTRCDVIPLAQEAGAGSSARRLYTCAGFIRPGRSKGIFRKVWAPAGKPRLLAWRFAGLDNLFFDRRAKGVFANTSQLPVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRL 407
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BLAST of mRNA_Ecto-sp13_S_contig809.19429.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.590e-74
Identity = 142/279 (50.90%), Postives = 185/279 (66.31%), Query Frame = 3 
Query:    3 SPGTVSDLLASREGHVLTAEEGVDNGVVGEHIMPVATTPLGGLRRGFLHGRIAASSALMSIESLRVGPDGGXXXXXXXXXXXXXXXXXXXXXL-PHRLAAVTWDXXXXRLMARVNPFLTTEAXXXXXXXXVEEERQPLVWEVVTDDGGERVDLTRITTRCDVIPLAQEAGAGSSAR-RLYTCVGFIRP-GRSKGIFRKVWAPAGKPRLLAWRFAGLDNLFFDRRAKGVFANTSQLPVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRL 830
            SPG  + +L + EGH+LT+ E   +GV  EH+  VAT P GGLRRGFLHG++AA+SALM +ESL VGP G                        P+RLA V W     RL++RV+PFLT+            +    +VWEVV  DGGE +D++RI  RCDV+P  Q AGAGSS+  R+++  GFIR  G+ K  ++KVW+P+G+P++L WRF GL  LFFD+RA  V+ N + LPVFS+PLVIFTDAFNFFQR G+ +S+NATHF+IGSTTR+ RRRL
Sbjct:  102 SPGAAAGILDNLEGHLLTSAEREASGVPDEHLTAVATKPAGGLRRGFLHGKVAAASALMGVESLLVGPSGRQEKIFVGDTVLVASADERPEEARPYRLAEVVWVEDLSRLVSRVSPFLTSAEARITGAGAPPD----VVWEVVDGDGGEEIDISRIEGRCDVVPHVQGAGAGSSSSGRVFSAAGFIRRCGKEK--YKKVWSPSGQPKVLPWRFEGLYGLFFDKRAARVYFNKAGLPVFSIPLVIFTDAFNFFQRGGSPYSINATHFTIGSTTRAFRRRL 374
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BLAST of mRNA_Ecto-sp13_S_contig809.19429.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.960e-8
Identity = 38/80 (47.50%), Postives = 45/80 (56.25%), Query Frame = 3 
Query:  624 WRFAGLDNLFFDRRAKGVFANTSQLPVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRLHHGT*ATSGRP 863
            WR  G    FFDRRA GV AN + LPVFS  L   +DAFN+F   G  +SVNAT   +G  + +  RRL     AT G P
Sbjct:    4 WRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLP 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig809.19429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JF97_9PHAE2.990e-15393.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYQ6_9PHAE2.590e-7450.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI4_ECTSI8.960e-847.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig809contigEcto-sp13_S_contig809:10270..11159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size890
Hectar predicted targeting categoryother localisation
Exons1
Cds size747
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.795367-UTR-Ecto-sp13_S_contig809:10269..103671681464081.795367-UTR-Ecto-sp13_S_contig809:10269..10367Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig809 10270..10367 +
1681464081.8180802-UTR-Ecto-sp13_S_contig809:11114..111591681464081.8180802-UTR-Ecto-sp13_S_contig809:11114..11159Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig809 11115..11159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.806671-CDS-Ecto-sp13_S_contig809:10367..111141681464081.806671-CDS-Ecto-sp13_S_contig809:10367..11114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig809 10368..11114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig809.19429.1prot_Ecto-sp13_S_contig809.19429.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig809 10368..11114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig809.19429.1

>prot_Ecto-sp13_S_contig809.19429.1 ID=prot_Ecto-sp13_S_contig809.19429.1|Name=mRNA_Ecto-sp13_S_contig809.19429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
MPVATTPLGGLRRGFLHGRIAASSALMSIESLRVGPDGGGGSVVVGDTVM
VLSSDGGSEQLPHRLAAVTWDEEEERLMARVNPFLTTEAALLNNPPAVEE
ERQPLVWEVVTDDGGERVDLTRITTRCDVIPLAQEAGAGSSARRLYTCVG
FIRPGRSKGIFRKVWAPAGKPRLLAWRFAGLDNLFFDRRAKGVFANTSQL
PVFSVPLVIFTDAFNFFQRIGNAFSVNATHFSIGSTTRSHRRRLHHGT*
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mRNA from alignment at Ecto-sp13_S_contig809:10270..11159+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig809.19429.1 ID=mRNA_Ecto-sp13_S_contig809.19429.1|Name=mRNA_Ecto-sp13_S_contig809.19429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=890bp|location=Sequence derived from alignment at Ecto-sp13_S_contig809:10270..11159+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCGCCGGGCACTGTATCCGATCTGCTAGCTAGCCGGGAGGGCCACGTG
TTGACGGCGGAGGAAGGAGTAGACAACGGGGTCGTTGGTGAGCACATCAT
GCCCGTAGCCACTACGCCACTTGGCGGTCTTCGCCGCGGCTTCCTTCACG
GGAGAATTGCAGCATCTTCGGCCCTCATGAGTATCGAGTCGCTCAGAGTA
GGTCCCGATGGAGGTGGAGGGAGTGTTGTTGTCGGGGATACCGTGATGGT
CCTGTCCAGCGACGGCGGGAGTGAGCAGCTTCCACATCGCCTAGCGGCCG
TCACGTGGGACGAAGAGGAGGAACGCTTGATGGCGAGGGTGAACCCGTTC
CTTACGACAGAGGCCGCATTATTGAACAATCCACCGGCAGTAGAAGAGGA
ACGACAGCCTCTTGTTTGGGAAGTTGTCACCGATGATGGGGGCGAAAGGG
TGGACCTCACCCGGATCACGACGCGTTGCGACGTTATTCCTCTTGCCCAA
GAGGCCGGGGCCGGTTCGAGCGCTCGTCGGTTATACACCTGCGTCGGGTT
TATTCGACCCGGGCGGAGCAAGGGCATATTCAGAAAAGTGTGGGCACCGG
CCGGTAAACCTCGCCTTCTGGCGTGGAGGTTCGCCGGTCTGGACAACCTT
TTCTTCGACCGGCGCGCTAAGGGCGTCTTCGCAAACACCTCTCAGCTTCC
GGTGTTCTCGGTGCCCCTGGTAATTTTTACCGATGCCTTCAACTTTTTTC
AGCGCATCGGCAACGCCTTCTCGGTGAATGCCACACACTTCAGCATCGGG
TCAACTACCCGGTCCCACCGCCGCCGCCTTCATCATGGCACCTGAGCAAC
CTCGGGGCGCCCAGAGCAAGATGGGAGGAGGAGCTGGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig809:10270..11159+

>mRNA_Ecto-sp13_S_contig809.19429.1 ID=mRNA_Ecto-sp13_S_contig809.19429.1|Name=mRNA_Ecto-sp13_S_contig809.19429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig809:10270..11159+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTAGCCACTACGCCACTTGGCGGTCTTCGCCGCGGCTTCCTTCA
CGGGAGAATTGCAGCATCTTCGGCCCTCATGAGTATCGAGTCGCTCAGAG
TAGGTCCCGATGGAGGTGGAGGGAGTGTTGTTGTCGGGGATACCGTGATG
GTCCTGTCCAGCGACGGCGGGAGTGAGCAGCTTCCACATCGCCTAGCGGC
CGTCACGTGGGACGAAGAGGAGGAACGCTTGATGGCGAGGGTGAACCCGT
TCCTTACGACAGAGGCCGCATTATTGAACAATCCACCGGCAGTAGAAGAG
GAACGACAGCCTCTTGTTTGGGAAGTTGTCACCGATGATGGGGGCGAAAG
GGTGGACCTCACCCGGATCACGACGCGTTGCGACGTTATTCCTCTTGCCC
AAGAGGCCGGGGCCGGTTCGAGCGCTCGTCGGTTATACACCTGCGTCGGG
TTTATTCGACCCGGGCGGAGCAAGGGCATATTCAGAAAAGTGTGGGCACC
GGCCGGTAAACCTCGCCTTCTGGCGTGGAGGTTCGCCGGTCTGGACAACC
TTTTCTTCGACCGGCGCGCTAAGGGCGTCTTCGCAAACACCTCTCAGCTT
CCGGTGTTCTCGGTGCCCCTGGTAATTTTTACCGATGCCTTCAACTTTTT
TCAGCGCATCGGCAACGCCTTCTCGGTGAATGCCACACACTTCAGCATCG
GGTCAACTACCCGGTCCCACCGCCGCCGCCTTCATCATGGCACCTGA
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