mRNA_Ecto-sp13_S_contig8087.19426.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8087.19426.1
Unique NamemRNA_Ecto-sp13_S_contig8087.19426.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D7FI92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI92_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.010e-26
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVTSSGWGCKPDYFACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTCQVT+SGWGC PDYFACID E PCVD DDITAE+V+N
Sbjct:    8 GYDGGDCCECTCQVTNSGWGCNPDYFACIDLEAPCVDDDDITAEMVEN 55          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.490e-18
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVTSS----GWGCKPDYFACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTCQ  S      WGC  DY ACIDP+  CVD DD+TAE+V+N
Sbjct:   51 GYDGGDCCECTCQTQSDDDYYSWGCNKDYMACIDPDASCVDDDDVTAEMVEN 102          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D7FI91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI91_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.080e-14
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVTSSG-----WGCKPDYFACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTCQ  S         C  DY AC+DP+  CVD DD+T E+V+N
Sbjct:   29 GYDGGDCCECTCQTQSDDDFYYPENCDADYMACVDPDASCVDDDDVTVEMVEN 81          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D7FI89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI89_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 8.300e-13
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVT---SSGWGCKPDY--FACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTC+      + W C  D   FACIDP  PCV+ DDITA +V+N
Sbjct:    3 GYDGGDCCECTCESPWDDDNDWLCSSDGSGFACIDPAAPCVEDDDITAVMVEN 55          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D7G6M7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M7_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.430e-12
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVTSS----GWGCKPDYFACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTCQ  S        C  +Y ACIDP+  CVD DD+T E+V N
Sbjct:   51 GYDGGDCCECTCQTQSDDDYYSGRCDKEYMACIDPDASCVDDDDVTIELVAN 102          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.270e-12
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVT-SSGWGCKPDYFACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTC V  S+ +GC    FACIDP  PCVD DD+TA+ ++N
Sbjct:   77 GYDGGDCCECTCVVDWSAEFGCTE--FACIDPTAPCVDDDDVTADALEN 123          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 7.190e-12
Identity = 32/53 (60.38%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVT---SSGWGCKPDY--FACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTCQ        W C  D   FACIDP+ PCVD DDIT E+  N
Sbjct:   44 GYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQN 96          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.190e-12
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVT-SSGWGCKPDYFACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTC V  S+ +GC    FACIDP  PCVD DD+TA+ ++N
Sbjct:  226 GYDGGDCCECTCVVDWSAEFGCTE--FACIDPTAPCVDDDDVTADALEN 272          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.810e-12
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 GYDGGDCCECTCQVTSS-GWGCKPDY----FACIDPETPCVDRDDITAEVVDN 144
            GYDGGDCCECTC+  S   W    DY    FACIDP  PCVD DDIT ++V+N
Sbjct:  214 GYDGGDCCECTCEYESPYDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVEN 266          
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.490e-11
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    4 YDGGDCCECTCQVTSSGWG--CKPDYFACIDPETPCVDRDDITAE 132
            YDGGDCCECTC+    G+   C+P  FACIDPE  CVD DD TAE
Sbjct:  258 YDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAE 302          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8087.19426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FI92_ECTSI2.010e-2685.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2J7_9PHAE5.490e-1865.38LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI91_ECTSI3.080e-1456.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI89_ECTSI8.300e-1358.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6M7_ECTSI1.430e-1257.69LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FSR3_ECTSI4.270e-1263.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI7.190e-1260.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE7.190e-1263.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI9.810e-1260.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI4.490e-1164.44Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8087contigEcto-sp13_S_contig8087:1304..1731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.6488786-CDS-Ecto-sp13_S_contig8087:1303..13421681464081.6488786-CDS-Ecto-sp13_S_contig8087:1303..1342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8087 1304..1342 +
1681464081.6599264-CDS-Ecto-sp13_S_contig8087:1626..17311681464081.6599264-CDS-Ecto-sp13_S_contig8087:1626..1731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8087 1627..1731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8087.19426.1prot_Ecto-sp13_S_contig8087.19426.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8087 1304..1731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8087.19426.1

>prot_Ecto-sp13_S_contig8087.19426.1 ID=prot_Ecto-sp13_S_contig8087.19426.1|Name=mRNA_Ecto-sp13_S_contig8087.19426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
GYDGGDCCECTCQVTSSGWGCKPDYFACIDPETPCVDRDDITAEVVDN
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mRNA from alignment at Ecto-sp13_S_contig8087:1304..1731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8087.19426.1 ID=mRNA_Ecto-sp13_S_contig8087.19426.1|Name=mRNA_Ecto-sp13_S_contig8087.19426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8087:1304..1731+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTACGACGGCGGCGACTGCTGCGAATGCACCTGCCAGGTACGATCTGT TCAACTCGTACGGGCTTGAGAGCTTGACTCTGCTCTCTTGGTTGGTGCCC CCCCCTTTCTGCCCACAATACGCTCTGATTTACCGATCAAGAGCACCTGT TTGTGCTGGTATATTGCATGGCGGAAGCCCGATGCTTTTCCACGTTTCAA GTACACACGCCGGAAGTTGCCATGCAACATAACGATGGTTCTCTCTCTCC CCTCCTCGCCGCCGTACCCCTCCTTGGAATTGATTGCCCGCTCCCTCTCT GTTATTACTCGTACCGACTTCAGGTAACGAGCTCAGGTTGGGGCTGCAAA CCAGACTACTTCGCCTGCATCGACCCGGAAACCCCTTGCGTCGACCGTGA CGACATTACTGCTGAAGTGGTGGACAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8087:1304..1731+

>mRNA_Ecto-sp13_S_contig8087.19426.1 ID=mRNA_Ecto-sp13_S_contig8087.19426.1|Name=mRNA_Ecto-sp13_S_contig8087.19426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8087:1304..1731+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTACGACGGCGGCGACTGCTGCGAATGCACCTGCCAGGTAACGAGCTC
AGGTTGGGGCTGCAAACCAGACTACTTCGCCTGCATCGACCCGGAAACCC
CTTGCGTCGACCGTGACGACATTACTGCTGAAGTGGTGGACAAT
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