mRNA_Ecto-sp13_S_contig80832.19424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80832.19424.1
Unique NamemRNA_Ecto-sp13_S_contig80832.19424.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: D7FUW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.270e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 YFELKGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL 210
            YFELKGVGDAL KRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL
Sbjct:  141 YFELKGVGDALSKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: A0A835YSP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.180e-15
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 YFELKGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDL 207
            Y   K   + L +   KN +ELN+LQDTLRQVE YNEE+K EILVTRRATYKAE A+  LEK+KGRQD+
Sbjct:   48 YARRKQATEDLAQAHAKNMAELNALQDTLRQVEQYNEEVKGEILVTRRATYKAESAMQGLEKEKGRQDV 116
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: A0A8J2STC7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STC7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.330e-12
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   37 KRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDL 207
            K + KN++EL+++ DTLRQVE YNEEM+ EI VT+RATYKAEE V +LEK K  QDL
Sbjct:  168 KHVAKNQAELDAINDTLRQVETYNEEMQKEIAVTKRATYKAEEQVQSLEKAKEGQDL 224
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: A0A0G4F5J4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F5J4_VITBC)

HSP 1 Score: 68.6 bits (166), Expect = 7.300e-12
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 YFELKGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL 210
            Y   KG      KRL K + E+N L  TL+QVE +NE+MK EI VTRRATYKAE+A+  +EKDK +QD L
Sbjct:  123 YESKKGEVTTQIKRLQKAQEEVNQLNMTLQQVENFNEQMKAEIQVTRRATYKAEDAIQKIEKDKMKQDFL 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: A0A7S2C2G7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2G7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.950e-12
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   10 LKGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDL 207
            LKG      K L+K ++EL++L +T+ QVE YNEEMK+EI VTRRATYKAE +V  LEK K  QDL
Sbjct:  154 LKGAYAERQKSLLKTQAELDALNETIHQVERYNEEMKNEIAVTRRATYKAETSVVELEKQKQGQDL 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: R1F822_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F822_EMIHU)

HSP 1 Score: 67.0 bits (162), Expect = 2.530e-11
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 YFELKGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL 210
            Y E  G    L  R  K +SEL+ L  T+RQVE +NE+M+ EI VTRRATYKAEEAVS LE DK  QD L
Sbjct:   94 YGEALGESKELRGRYEKYQSELDQLAATIRQVEAFNEQMRSEIAVTRRATYKAEEAVSKLEGDKRSQDHL 163
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: A0A812QRI1_9DINO (CCDC40 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812QRI1_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 4.100e-11
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   37 KRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL 210
            +RL K++ ELN L  T+RQV+ YNE+MK EI VTRRATYKAE+ +  +E+ K +QDLL
Sbjct:   32 RRLAKSQDELNQLNITVRQVQEYNEQMKAEIQVTRRATYKAEDHIKQIEEMKSKQDLL 89
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: A0A7S3SBW1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SBW1_9SPIT)

HSP 1 Score: 65.5 bits (158), Expect = 4.670e-11
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    7 ELKGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL 210
            +LKGV +    R  K ++EL+ L  T+RQVE +NE+MK EI VTRRATYKAEEA++ LE +K  QDLL
Sbjct:  120 QLKGVQEQR-GRYSKYQAELDQLAATIRQVEAFNEQMKSEIAVTRRATYKAEEAIAKLEVNKKSQDLL 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: F0Y3X9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3X9_AURAN)

HSP 1 Score: 65.9 bits (159), Expect = 6.470e-11
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   37 KRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDL 207
            K + KN++EL+++ DTLRQVE YNEEM+ EI VT+RATYKAEE V +LE  K  QDL
Sbjct:   98 KHVAKNQAELDAVNDTLRQVEKYNEEMRKEIAVTKRATYKAEENVQSLEHAKKGQDL 154
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Match: A0A813LUX0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LUX0_POLGL)

HSP 1 Score: 65.9 bits (159), Expect = 6.470e-11
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   13 KGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRATYKAEEAVSNLEKDKGRQDLL 210
            K   D   KRL K++ ELN L  T+RQVE YNE+MK EI VTRRATYKAE+ +  +E  K +QDLL
Sbjct:  125 KAEVDDATKRLAKSQDELNQLNITVRQVEEYNEQMKAEIQVTRRATYKAEDHIKQIEAVKHKQDLL 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80832.19424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUW3_ECTSI4.270e-3398.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSP4_9STRA2.180e-1563.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2STC7_9STRA5.330e-1264.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4F5J4_VITBC7.300e-1255.71Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2C2G7_9STRA9.950e-1259.09Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
R1F822_EMIHU2.530e-1158.57Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A812QRI1_9DINO4.100e-1158.62CCDC40 protein n=1 Tax=Symbiodinium necroappetens ... [more]
A0A7S3SBW1_9SPIT4.670e-1157.35Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
F0Y3X9_AURAN6.470e-1163.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A813LUX0_POLGL6.470e-1157.58Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80832contigEcto-sp13_S_contig80832:36..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score130.2
Seed ortholog evalue3.8e-28
Seed eggNOG ortholog2880.D7FUW3
Preferred nameCCDC40
Model size210
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001655,GO:0001822,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003146,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051641,GO:0051674,GO:0055123,GO:0060271,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072001,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons2
EggNOG free text desc.epithelial cilium movement involved in determination of left/right asymmetry
EggNOG OGs2CJ7Q@1,2QQ91@2759
Cds size210
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.411264-CDS-Ecto-sp13_S_contig80832:35..1281681464081.411264-CDS-Ecto-sp13_S_contig80832:35..128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80832 36..128 +
1681464081.4308941-CDS-Ecto-sp13_S_contig80832:493..6101681464081.4308941-CDS-Ecto-sp13_S_contig80832:493..610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80832 494..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80832.19424.1prot_Ecto-sp13_S_contig80832.19424.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80832 36..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80832.19424.1

>prot_Ecto-sp13_S_contig80832.19424.1 ID=prot_Ecto-sp13_S_contig80832.19424.1|Name=mRNA_Ecto-sp13_S_contig80832.19424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
YFELKGVGDALFKRLIKNESELNSLQDTLRQVELYNEEMKDEILVTRRAT
YKAEEAVSNLEKDKGRQDLL
back to top

mRNA from alignment at Ecto-sp13_S_contig80832:36..610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80832.19424.1 ID=mRNA_Ecto-sp13_S_contig80832.19424.1|Name=mRNA_Ecto-sp13_S_contig80832.19424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80832:36..610+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTTCGAGCTGAAGGGGGTCGGTGACGCCCTCTTCAAACGGCTAATTAA
AAACGAGTCAGAGTTGAACTCTCTCCAGGACACCCTCCGACAGGTAAGTG
TACTCCCAGCGCAAGTGTGTTCGGGGGGGAATTCGTTTGGCGGTTATTAG
TTGAGGGTTGACGGGTTTGTGGTCAGTGGATGCCTTTGCTGCCATGAGGC
AAGCAGTCCAGCGCTCACTTGATGTAGTTGTTGGTCGACCACTGTTTTGA
ATACACCGGCAAGACTTACCCCAGTGGGTGCGGCAATAGAACCGCGTGAA
TGAACCGCACCTTGAGTCTAAGTAAAGATAGAGAGGAGCCCAGATTATGT
TGAGCCGAAGCAAAAAAGCAAACTCGGGTAGTGGGCCGAAAGCGCAAGAT
ACACGGCTGTTGTTCCGTGTTTACCGTAAACGATTGGCCCCTACAACACA
AACACCAGGTTGAGCTGTACAACGAAGAAATGAAGGACGAGATCCTGGTG
ACAAGGCGAGCCACGTACAAGGCGGAGGAGGCCGTCTCGAACTTAGAGAA
GGACAAGGGGCGACAAGACCTCTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80832:36..610+

>mRNA_Ecto-sp13_S_contig80832.19424.1 ID=mRNA_Ecto-sp13_S_contig80832.19424.1|Name=mRNA_Ecto-sp13_S_contig80832.19424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80832:36..610+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTTCGAGCTGAAGGGGGTCGGTGACGCCCTCTTCAAACGGCTAATTAA
AAACGAGTCAGAGTTGAACTCTCTCCAGGACACCCTCCGACAGGTTGAGC
TGTACAACGAAGAAATGAAGGACGAGATCCTGGTGACAAGGCGAGCCACG
TACAAGGCGGAGGAGGCCGTCTCGAACTTAGAGAAGGACAAGGGGCGACA
AGACCTCTTG
back to top