mRNA_Ecto-sp13_S_contig8082.19422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8082.19422.1
Unique NamemRNA_Ecto-sp13_S_contig8082.19422.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8082.19422.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 2.770e-92
Identity = 167/194 (86.08%), Postives = 170/194 (87.63%), Query Frame = 1 
Query:    1 SKKVELKTLPAVVGSAHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCPKPKTGPSPRISGTDAFNTTTIHEDDKASTASFNGGGIANNNSS---NTSHKVRCPHCLHGFSPAVAPTHISICARVENRPKGSGIAKAAAASKDDAQKKVALGVDYTDASPPGGRKGLAASHGSSGAXXXXXXXXXPEKARVMPPFY 573
            SKKV LKTLPAV G AHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCP+PKTGPSPRISGTDA N T IHEDDKA TA++NGG           N S KVRCPHCL GFSPAVAPTHISICARVENRPKGSG AKAAAA KDDAQKKVALGV YTDASPPGGRKGLAASHGSSGAXXXXXXXXXPEKARVMPPFY
Sbjct:  402 SKKVALKTLPAVEGRAHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCPRPKTGPSPRISGTDASNATVIHEDDKARTATYNGGXXXXXXXXXXXNASRKVRCPHCLRGFSPAVAPTHISICARVENRPKGSGTAKAAAARKDDAQKKVALGVGYTDASPPGGRKGLAASHGSSGAXXXXXXXXXPEKARVMPPFY 595
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BLAST of mRNA_Ecto-sp13_S_contig8082.19422.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.680e-34
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 SKKVELKTLPAVVGSAHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCPKPKTGPSPRISGTDAFNTTTIHEDDKASTASFNGGGIA 255
            SKKV LKTLPAV GSAHCPFCS+SIPRAKLSAHLLRCKKLRRSQTCP+P+ GPSPRI GTDA NTTTI EDDKA TA+FNGGGIA
Sbjct: 1201 SKKVALKTLPAVEGSAHCPFCSTSIPRAKLSAHLLRCKKLRRSQTCPRPEAGPSPRIGGTDASNTTTIDEDDKARTATFNGGGIA 1285
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8082.19422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQR3_9PHAE2.770e-9286.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ9_ECTSI1.680e-3487.06WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8082contigEcto-sp13_S_contig8082:522..4491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1360
Hectar predicted targeting categoryother localisation
Exons4
Cds size576
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.2332432-UTR-Ecto-sp13_S_contig8082:521..13051681464081.2332432-UTR-Ecto-sp13_S_contig8082:521..1305Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8082 522..1305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.2476025-CDS-Ecto-sp13_S_contig8082:1305..13321681464081.2476025-CDS-Ecto-sp13_S_contig8082:1305..1332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 1306..1332 -
1681464081.2727516-CDS-Ecto-sp13_S_contig8082:2559..29581681464081.2727516-CDS-Ecto-sp13_S_contig8082:2559..2958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 2560..2958 -
1681464081.281381-CDS-Ecto-sp13_S_contig8082:3310..34161681464081.281381-CDS-Ecto-sp13_S_contig8082:3310..3416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 3311..3416 -
1681464081.2920427-CDS-Ecto-sp13_S_contig8082:4447..44911681464081.2920427-CDS-Ecto-sp13_S_contig8082:4447..4491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8082 4448..4491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8082.19422.1prot_Ecto-sp13_S_contig8082.19422.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8082 1306..4491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8082.19422.1

>prot_Ecto-sp13_S_contig8082.19422.1 ID=prot_Ecto-sp13_S_contig8082.19422.1|Name=mRNA_Ecto-sp13_S_contig8082.19422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
SKKVELKTLPAVVGSAHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCPKPK
TGPSPRISGTDAFNTTTIHEDDKASTASFNGGGIANNNSSNTSHKVRCPH
CLHGFSPAVAPTHISICARVENRPKGSGIAKAAAASKDDAQKKVALGVDY
TDASPPGGRKGLAASHGSSGARRLQQQQQQPEKARVMPPFY*
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mRNA from alignment at Ecto-sp13_S_contig8082:522..4491-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8082.19422.1 ID=mRNA_Ecto-sp13_S_contig8082.19422.1|Name=mRNA_Ecto-sp13_S_contig8082.19422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3970bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8082:522..4491- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAAGAAGGTTGAGCTTAAGACGCTGCCTGCGGTCGTGGGAAGGTACGA
GAGCTTGCAGTGGATGAACGTGGTTTTATTGTCTTAAACCAAGTCAAGTG
TCCGAATGAACTTTTCTTAGTGTGACCGTGCCTTGTCTTGACGTACGTAG
ACTTGTGTTGACGTACGTAGACTTGTCTGAACGAACGTAGGGCCCGTCCA
GAAAAAGGGTATAGGAGAAAAAACTGCGAACACCTCTTCCCTCTCCCAGA
TTTACACGGTACAGGTGACGAGGTGGGTTTGCTTCAAATGTAGCCCTTGG
AAGAACCCCATGTTGTCGGGGGAGGGGCTGCTGAAATTGTACGTGTTGCT
TGGCAGCGGAGCTCGGCCTGAGGCCTTGATCGTAGTTGTCAGAGGGGAGT
GCATGGCGCTCTGTGCTGGTGGATTATCCGCTGATACCCTTTGGTTGCGC
TAGCCCCCATGAATCCTGGAAGAGAAGAATGAATCCCAGTGCGACATAAA
TGCCCATTGGTTTCAGCATCAACCAAGACTAGCCATTCATTCAAGCTGAA
AGCCATGCCTCCGTGGACTAATTTCGCGGTGCCCCCGCCTTCATATTGCA
CACAAACCCTACTTGCAGAGCACGGTTGGTTGTTTAGCTGCTGCAAGTAT
TATATCCACAGCGAGAGTTTCTGGCAGCGCCGCAAACGCTTACATTCGTG
CAACGATTGCGTTTATGACAACCAGACGACAGGCTTCGGTCAATATACTT
CGAAGTATATATTTTTCTTCAAGAGACGTCGTCTTTGTTGCACTCCACAC
CGAACTGCCTTGCACCATGATACATCGCTCCCTGTTTCTGTCTTCATCCA
CCCTTGTTTTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTGTCCGTCCATCGTTGGCTTTCCGACCAGCGTGCC
CTGTTGTTCGCATGACACCCGCCGCCGCATGTCCACGATGATAACGGCTT
GCCAACAATTACTGTCTCTTTTTTATTGTTGCTGCTGTTTTTTTTTTGTT
TTTTTTTGTGCTTCTTCTGGGGCAGCGCGCACTGCCCTTTCTGCTCCAGC
TCCATCCCTCGCGCCAAGCTCTCGGCGCATCTCCTGCGGTGCAAGAAGTT
GCGCAGGTCTCAGACCTGTCCAAAACCCAAGGTAAGCAATTTACTGGCAT
GCTAGGGTCCCATTCCCTGATAGTCAGCCTGAACGTTTGCGAGCATCTCT
GCAGTAGAGTTGTCCGGCTCCTGGGGCGAATCGTCGTAGTACGCGATCGG
CTTTCATGCACCTGGTCGGCACATGGATACACGTGTTCGCGTGCCACTTT
TCCGTTCCGCTTTTCGCACCGCCGGGATCTTACTCTGTTCCGTTTTACGC
TTTACGGTAGATCGGTCGTTCGACCTCCGCTGTCCCTCTCGTTCCTTGAG
CGGTTCTACGCTTTCCCGTTCGTCTTAGTCAAGGCCACCGCACGTACCCC
CCCCCCCTGCTCCTTTTCTTCTTGTCTCGTAAGACTGGACCTTCACCGCG
CATCAGCGGTACTGACGCCTTCAACACCACCACCATCCACGAAGATGACA
AGGCCAGCACCGCCTCCTTCAACGGCGGCGGCATCGCCAACAACAACAGC
AGTAACACCTCCCACAAGGTACGGTGCCCCCACTGTCTCCATGGGTTCTC
GCCCGCCGTGGCCCCCACCCACATATCCATCTGCGCTCGTGTGGAAAACC
GCCCCAAGGGCAGCGGCATCGCCAAAGCAGCAGCTGCCAGTAAGGATGAT
GCTCAGAAGAAGGTGGCGTTGGGTGTCGACTACACCGACGCTTCTCCTCC
GGGGGGGCGAAAAGGACTTGCCGCTTCCCACGGCTCTAGCGGCGCCCGAC
GGTTACAGCAGCAGCAGCAGCAGCCAGAGAAGGTGTGTAGCCGTTGTGGG
TGAGGCCGGGATGGCTTGTGATCTTGGAGGGGACGCGGACAATCAGCATT
CGTTTTTGGATAAAATACAGACCAATGTGTTGAGAGAACAACCAACGGGC
TGCGGACCGATCAGACGGGACACTCTTTTCGTGGAAACATGGATTACGAA
TAACCATGGTACAAAAACTGGGTACCCGTGCGAGAGAATAACGAACCGTA
TTCCGTGCGAACATGTGTTTTGGTGTTTTTTAAGTGGATGCTGGGCTTAT
TTGAGATTGTTGTAAACGTAAACACCGAAAGCAGTGATGCCAGCAGGAAC
GGTCCATGTCTTGTCAGAAAGTTCTATGAACCATGGCAGGCTGTGCTGGC
TTTCTAGTATGTACAGAGTTACCAACGATAATGGTGCGGAGATGAAGGGC
AGGTGGGAGAAGAGGCTACCCGGTTCTTTACTTCATTTTGACGTTCAACG
AAACAGCTTCTACATCCAGATACGCCCAATATAGTCCACAGCAATTGTGC
GAAAGCCAGCCATGAGTGGCGCGGTTGTTCTACCATCAGGTCAAAAAACA
ACTGGGGCTACCGCCATTGCAACTTCAGGAGATGTAGCTTCCAGGGGGGC
GTACCGGGTCCCCAACACTTTCTGCAGTTTTCCCAAACGGCCCATGGGAC
TCCCATGGGTGACCCATGGTTGACCCATGGGTCACTCCCATGAGTGTAGC
CATCGGTAGCCTGTGGGCAGCCCACAGGCGGCCAATGAGAGCCCTTCAAC
CAACCAGTGTACTCCTACAATACACAACAGCCCAACTGCTTTCGGATGGG
CACAATAGTGGCTCAAACCCTAACGTTAACCGTAATCCTAACCCCAAGCC
CACACGGTACGTGCTAGGTTGGCGCTAGTGGATAAGTTCTAGGTTGAGGT
GAAGGTGGCCAAGTTCTAGGTTGATACGCCGGTGGCCAAGTTCTAGGTTG
AAGTGCCAACGGTGGGCACTGCATGGACCGCCCATGGGCGGCCCATGGAT
GACCCATGGGTGTCCCGTGGGCGGTTTAACAAAAACTGTCAATAGTGTGG
GAGATTGCTCACCGTAGGAAACCTGACAAATCCAGCATGCCCGAGGAACA
CGACGCACAGAGATGAATAACGGTGAATGGTGACACCCTCCAGTACTTGC
GTCATCCCCCCCCCCTCCCCCTCCTCCTCCTCCTCCTCGGCCATTATTTC
CTCTTGCAGGCGAGGGTCATGCCGCCCTTCTACTGACCACGGGAAAAAGT
GGGGTTCGACATATCCTTGTATCTTGCCCGCCTGGTGTGCCGGTGTTGTA
TGTATGTTGGGCTTGGTTTAATTGCTTGTGGTCTGCGGGGGGCCCTGTAA
TACTTAGGGAGGAGTCATCGCGTCTAAAACTGCCTGGTGTTGTATGGTGG
GCTTGATTTTATCGCTTGTGCACGGCGAGGCCCCTGTAGTACTAGAAGAA
GTGTTGAACTACTGTACATCAGATATATTGCAAGCATACTGGCCGTGTTG
GAAAGTAGCGATGACGTAGAGAGCGGTGCTTGTTGTAACGGTGACTCTGA
TAGGACGGTAGACGAAATCCCCTTCCGGTACTCCGCGAGCCCGCATTGGT
CATCGACTTTCGCCAAGGCTACTGTAGCTAGCCGGGGTAGTCTACGAGTT
TGATTGAATTCCTCATATAGGTAGAAAGCTTTGACATGTACCGGGCGTTA
TTTTAGAGTATCGGTGCGGGATGTCCCAGTGGTTTGTGTTGAGGGCATGT
ACTATGTTCTGGTTCTGTACATGAAATTGCGTCTCTTTCAGGCCGTATGG
TTCTGTTGACCACTGTGGGTTGGAGATTTAGCGCAGAAAACACAAGTGCG
GAAGACCGTGCAGAGAGGCCCTTGTGTGGCTTGGCTTTTTTTGTGTGCGA
GGTGGCTCTCCTGCTCCTTCGGGTATGAAACTTGACGAAAACACTGCAAT
AGTACAGGCCAAACAGTGATTTCGCACCGAGTGAGTCAACGGGTTGTAAA
GATGATGCTGTCATCTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8082:522..4491-

>mRNA_Ecto-sp13_S_contig8082.19422.1 ID=mRNA_Ecto-sp13_S_contig8082.19422.1|Name=mRNA_Ecto-sp13_S_contig8082.19422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8082:522..4491- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAAGAAGGTTGAGCTTAAGACGCTGCCTGCGGTCGTGGGAAGCGCGCA
CTGCCCTTTCTGCTCCAGCTCCATCCCTCGCGCCAAGCTCTCGGCGCATC
TCCTGCGGTGCAAGAAGTTGCGCAGGTCTCAGACCTGTCCAAAACCCAAG
ACTGGACCTTCACCGCGCATCAGCGGTACTGACGCCTTCAACACCACCAC
CATCCACGAAGATGACAAGGCCAGCACCGCCTCCTTCAACGGCGGCGGCA
TCGCCAACAACAACAGCAGTAACACCTCCCACAAGGTACGGTGCCCCCAC
TGTCTCCATGGGTTCTCGCCCGCCGTGGCCCCCACCCACATATCCATCTG
CGCTCGTGTGGAAAACCGCCCCAAGGGCAGCGGCATCGCCAAAGCAGCAG
CTGCCAGTAAGGATGATGCTCAGAAGAAGGTGGCGTTGGGTGTCGACTAC
ACCGACGCTTCTCCTCCGGGGGGGCGAAAAGGACTTGCCGCTTCCCACGG
CTCTAGCGGCGCCCGACGGTTACAGCAGCAGCAGCAGCAGCCAGAGAAGG
CGAGGGTCATGCCGCCCTTCTACTGA
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