mRNA_Ecto-sp13_S_contig8078.19419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8078.19419.1
Unique NamemRNA_Ecto-sp13_S_contig8078.19419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8078.19419.1 vs. uniprot
Match: D8LLT5_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT5_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 2.590e-61
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:    1 QGDRPVAVVRHKSKTKKEVGSPEPVYLQDIDFATAGGVATAADVLVKQARNRVRINRLKEGQAKARKTRQNEKGDEKRLKLTIRMMLGVRVAVGRQSNPLDQPGAEISEEAFSQ 342
            QGDRPVAVVRHKSKTKKEVGSPEPVYLQDIDFATAGGVATAADVLVKQARNRVRINRLKEGQAK R T  +EKGDEKRLKLTIRMMLGVRVAVGRQSNPLDQPGAEISEEAFSQ
Sbjct:  129 QGDRPVAVVRHKSKTKKEVGSPEPVYLQDIDFATAGGVATAADVLVKQARNRVRINRLKEGQAKGRHTEPDEKGDEKRLKLTIRMMLGVRVAVGRQSNPLDQPGAEISEEAFSQ 242
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BLAST of mRNA_Ecto-sp13_S_contig8078.19419.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.590e-15
Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:    1 QGDRPV----AVVRHKSKTKKEVGSPEPVYLQDIDFATAGGVATAADVLVKQARNRVRINRLKEGQAKARKTRQNEKG------------DEKRLKLTIRMMLGVRVAVGRQSNPLDQPGAEISEEAFSQA 345
            +GD+P     ++    +K+KK+V S + +YL DIDF  A G ATA D+LV+Q R RVR+ R+K+     +K R   K             DE    LTI MMLG+RVAVGRQ+NPL +P  E++ E F QA
Sbjct:  642 KGDKPTGGLGSLGAWPNKSKKDVDSAKVIYLGDIDF-DAPGEATATDILVRQHRTRVRVKRVKDKGTTRKKRRTKPKRRIRSGKPLHPEEDEVEYILTIGMMLGLRVAVGRQANPLAKP--ELTVEDFYQA 769
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BLAST of mRNA_Ecto-sp13_S_contig8078.19419.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.260e-14
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 1 
Query:    1 QGDRPV----AVVRHKSKTKKEVGSPEPVYLQDIDFATAGGVATAADVLVKQARNRVRINRLKEGQAKARKTRQNEKG------------DEKRLKLTIRMMLGVRVAVGRQSNPLDQPGAEISEEAFSQ 342
            +GD+P     ++    +K+KK+V S + +YL DIDF  A G ATA D+LV+Q R RVR+ R+K+     +K R   K             DE    LTI MMLG+RVAVGRQ+NPL +P  E++ E F Q
Sbjct:  270 KGDKPTGGLGSLGAWPNKSKKDVDSAKVIYLGDIDF-DAPGEATATDILVRQHRTRVRVKRVKDKGTTRKKRRTKPKRRIRSGKPLHPEEDEVEYILTIGMMLGLRVAVGRQANPLAKP--ELTVEDFYQ 396
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BLAST of mRNA_Ecto-sp13_S_contig8078.19419.1 vs. uniprot
Match: A0A6H5JMY7_9PHAE (PIPK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMY7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.990e-12
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:   10 RPVAVVRHKSKTKKEVGSPEPVYLQDIDFATAGGVATAADVLVKQARNRVRINRLKEGQAKARKTRQNEKGDEKRLKLTIRMMLGVRVAVGRQSNPLDQPG 312
            R +AV+R +  TKK++G  +PV++ DI         +   + V +AR+RVR+ RLK G    R  + +EK D+++L LT RMMLGVRVAVGRQ++P    G
Sbjct:   24 RAIAVLREQ--TKKKLGEEKPVFMNDIRLGPKD--ESFEHIQVHEARSRVRVGRLKYG----RNVKADEKADDEKLNLTFRMMLGVRVAVGRQASPFSSEG 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8078.19419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLT5_ECTSI2.590e-6195.61PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUU1_9PHAE6.590e-1543.51PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKC9_ECTSI2.260e-1443.08PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMY7_9PHAE2.990e-1243.56PIPK domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8078contigEcto-sp13_S_contig8078:3104..4510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score207.6
Seed ortholog evalue3.3e-51
Seed eggNOG ortholog2880.D8LLT5
Model size366
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionPhosphatidylinositol-4-phosphate 5-kinase
Ec32 orthologEc-02_002790.1
EC2.7.1.68
Cds size366
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464080.878432-CDS-Ecto-sp13_S_contig8078:3103..31721681464080.878432-CDS-Ecto-sp13_S_contig8078:3103..3172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8078 3104..3172 +
1681464080.8977904-CDS-Ecto-sp13_S_contig8078:3762..39041681464080.8977904-CDS-Ecto-sp13_S_contig8078:3762..3904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8078 3763..3904 +
1681464080.9068635-CDS-Ecto-sp13_S_contig8078:4355..45101681464080.9068635-CDS-Ecto-sp13_S_contig8078:4355..4510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8078 4356..4510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8078.19419.1prot_Ecto-sp13_S_contig8078.19419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8078 3104..4510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8078.19419.1

>prot_Ecto-sp13_S_contig8078.19419.1 ID=prot_Ecto-sp13_S_contig8078.19419.1|Name=mRNA_Ecto-sp13_S_contig8078.19419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
QGDRPVAVVRHKSKTKKEVGSPEPVYLQDIDFATAGGVATAADVLVKQAR
NRVRINRLKEGQAKARKTRQNEKGDEKRLKLTIRMMLGVRVAVGRQSNPL
DQPGAEISEEAFSQAGGCLRW*
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mRNA from alignment at Ecto-sp13_S_contig8078:3104..4510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8078.19419.1 ID=mRNA_Ecto-sp13_S_contig8078.19419.1|Name=mRNA_Ecto-sp13_S_contig8078.19419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1407bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8078:3104..4510+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGAGACCGACCGGTGGCGGTGGTGAGGCACAAGAGCAAGACCAAGAA
AGAGGTTGGCTCCCCAGAGGTGAGCAGGGGGGGGGGGGGCAGAGTCCCCT
ATGGTTTAGACGTGTTCGCTCTCGTCCATCACTGCTCTTGTCGGTTGGTA
TCACACTGCTTCATGCCTCGCAAAAGGGCAATATGGCCTTTGGGAAGCGA
AGTGTGGGGCGTTTTAGTTGTCACCTGCTTTTCAGCTGTGCGACGTTGGA
CGTTGCTCGAACCGTCCGTCTCCCGGAAGCCCAGGCCTCGTCCTTTGCCT
GTTGTTTTCTGGGGAGCCAGGCGACCGCAGCGGTAGAAGAGACGAACTGG
GACGCATGGCACCATAAACTTGTTTATTTTGTTCGTCTTGAAGCACTGCT
GTCCACGTTGCCATTCGAACGACAATCGTCTTCTAGGAAGACCCCGCGGG
ACGCAGTATGAATTGATTACAAGCATGCACGGTTACCTCGAGTGCATGTT
GTATGCCATATTCGCGAAGACAGCAACCATTTCTCTGATGTCATTTGTGA
CAGTTTTCGTCCACTTCTTTCTTCTGTCTTGCCTGCCCTTCATTGTCCAT
GTTTTTGTCTGTGTTGTTTTTTCGTCCCATTTGTCTGTCCGTCCATCCAT
CTGAGGCAGCCAGTCTATTTGCAAGATATCGACTTCGCGACGGCAGGGGG
GGTGGCCACGGCGGCAGACGTGCTCGTCAAGCAGGCGCGCAACCGAGTGC
GCATCAACCGTCTCAAGGAGGGCCAGGCCAAGGCGAGAAAGACGAGACAA
AGTTCGATATTCCGGTTGATGGGTGGGACTATTTTTTATGAGTGTAGTTG
AAATCAACGCGGTGTTGCGTACTAGAAGCCGAGTTTGGAAAGGAAGGTAG
TGTCTCTCTCTCGCTGACGGTTGTGCGGAAAGGGTTCATCGATTTCACAA
CCGCCGCCCGTGCCGTGCACGCACGAGTGTTCCCAGGACGGAAAATGCGA
GGGCAGGCAGCAACTGATGGCGTTGCATGCGGTGTGTTGGTGATGATGAC
CTTATACTTTGGTTCTCTGTGCGTTGTGTACTAGCTGCTTGCTCTTCGCA
ACCGGTTCCACTTAATTTTTTTATGCTGCTTTTTGGGTGTGAAGTGTGGT
TGGCTGGCGGCCGGCCCAACCGCCGGTCGGCAAAAAATAAAAAGACAAAA
AAAACAATTTCCGTCTCGCACGTGCGCCACCAGGGCCGACACACCGAGCC
AGACGAGAAGGGAGACGAGAAGAGGCTCAAGCTCACAATCCGGATGATGC
TGGGCGTCAGGGTGGCGGTGGGGCGACAGTCCAACCCGCTCGACCAACCC
GGAGCGGAAATTTCGGAGGAGGCGTTTTCGCAGGCGGGTGGTTGCCTGCG
ATGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8078:3104..4510+

>mRNA_Ecto-sp13_S_contig8078.19419.1 ID=mRNA_Ecto-sp13_S_contig8078.19419.1|Name=mRNA_Ecto-sp13_S_contig8078.19419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8078:3104..4510+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGAGACCGACCGGTGGCGGTGGTGAGGCACAAGAGCAAGACCAAGAA
AGAGGTTGGCTCCCCAGAGCCAGTCTATTTGCAAGATATCGACTTCGCGA
CGGCAGGGGGGGTGGCCACGGCGGCAGACGTGCTCGTCAAGCAGGCGCGC
AACCGAGTGCGCATCAACCGTCTCAAGGAGGGCCAGGCCAAGGCGAGAAA
GACGAGACAAAACGAGAAGGGAGACGAGAAGAGGCTCAAGCTCACAATCC
GGATGATGCTGGGCGTCAGGGTGGCGGTGGGGCGACAGTCCAACCCGCTC
GACCAACCCGGAGCGGAAATTTCGGAGGAGGCGTTTTCGCAGGCGGGTGG
TTGCCTGCGATGGTAG
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