mRNA_Ecto-sp13_S_contig80745.19416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80745.19416.1
Unique NamemRNA_Ecto-sp13_S_contig80745.19416.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80745.19416.1 vs. uniprot
Match: D8LP91_ECTSI (EsV-1-58 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP91_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 7.100e-32
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 3 
Query:   24 AHWVQTGQVPALSNGGGPQMVQHQPQPMQQPDPWAGQRHTPGVDPRPLQQPPGYQMPVQPVQVGQFNQ 227
            A WVQTGQVPALSNGGGPQMVQHQPQPMQQPDPWAGQ H PGVDPRPLQQP GYQMP+ PVQ GQFNQ
Sbjct:  321 AQWVQTGQVPALSNGGGPQMVQHQPQPMQQPDPWAGQNHMPGVDPRPLQQP-GYQMPMPPVQAGQFNQ 387
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BLAST of mRNA_Ecto-sp13_S_contig80745.19416.1 vs. uniprot
Match: Q9J3U3_ESV1K (EsV-1-58 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q9J3U3_ESV1K)

HSP 1 Score: 113 bits (282), Expect = 1.000e-27
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 3 
Query:   24 AHWVQTGQVPALSNGGGPQMVQHQPQPMQQPDPWAGQRHTPGVDPRPLQQPPGYQMP---------VQPVQVGQFNQ 227
            A+WVQTGQVPA+SNGGGPQMVQHQPQPMQQPDPWAGQRHTPGVDPRPL+QP  YQ           VQPVQ GQFNQ
Sbjct:  378 AYWVQTGQVPAVSNGGGPQMVQHQPQPMQQPDPWAGQRHTPGVDPRPLEQP-VYQRXXXXXXXXXXVQPVQAGQFNQ 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80745.19416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP91_ECTSI7.100e-3289.71EsV-1-58 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q9J3U3_ESV1K1.000e-2777.92EsV-1-58 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80745contigEcto-sp13_S_contig80745:140..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size230
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-58
Ec32 orthologEc-06_006210.1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464080.695613-CDS-Ecto-sp13_S_contig80745:139..3151681464080.695613-CDS-Ecto-sp13_S_contig80745:139..315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80745 140..315 +
1681464080.710143-CDS-Ecto-sp13_S_contig80745:345..3971681464080.710143-CDS-Ecto-sp13_S_contig80745:345..397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80745 346..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80745.19416.1prot_Ecto-sp13_S_contig80745.19416.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80745 140..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80745.19416.1

>prot_Ecto-sp13_S_contig80745.19416.1 ID=prot_Ecto-sp13_S_contig80745.19416.1|Name=mRNA_Ecto-sp13_S_contig80745.19416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MILYSWFSRTGCRLDKSRLCRTEEARRWFNTSHNPCNSLTRGQVRGTRPA
LTRGRFSSLLATRCRCNRCKWGSSIN
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mRNA from alignment at Ecto-sp13_S_contig80745:140..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80745.19416.1 ID=mRNA_Ecto-sp13_S_contig80745.19416.1|Name=mRNA_Ecto-sp13_S_contig80745.19416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80745:140..397+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACTTTATAGTTGGTTTTCGCGCACTGGGTGCAGACTGGACAAGTC
CCGGCTCTGTCGAACGGAGGAGGCCCGCAGATGGTTCAACACCAGCCACA
ACCCATGCAACAGCCTGACCCGTGGGCAGGTCAGAGGCACACGCCCGGCG
TTGACCCGAGGCCGCTTCAGCAGCCTGTCTACCAGAGGCCGGGATCGCAA
CCGCAGCCTGGCTACCAGATGCCGGTGCAACCGGTGCAAGTGGGGCAGTT
CAATCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80745:140..397+

>mRNA_Ecto-sp13_S_contig80745.19416.1 ID=mRNA_Ecto-sp13_S_contig80745.19416.1|Name=mRNA_Ecto-sp13_S_contig80745.19416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80745:140..397+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACTTTATAGTTGGTTTTCGCGCACTGGGTGCAGACTGGACAAGTC
CCGGCTCTGTCGAACGGAGGAGGCCCGCAGATGGTTCAACACCAGCCACA
ACCCATGCAACAGCCTGACCCGTGGGCAGGTCAGAGGCACACGCCCGGCG
TTGACCCGAGGCCGCTTCAGCAGCCTCCTGGCTACCAGATGCCGGTGCAA
CCGGTGCAAGTGGGGCAGTTCAATCAAC
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