mRNA_Ecto-sp13_S_contig8074.19414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8074.19414.1
Unique NamemRNA_Ecto-sp13_S_contig8074.19414.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI)

HSP 1 Score: 637 bits (1642), Expect = 3.010e-227
Identity = 349/410 (85.12%), Postives = 356/410 (86.83%), Query Frame = 1
Query:    1 LPFEHPCPHTVSTFTYSIGRINSTMNAPTFGPSPPREREAPVLITRHYET-GDVQSSPFHGEAIESVH--PDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKS----SQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRIVRVMLPTSTSTSPSASTSGTAFAAPNAPLTEFVLRTRLQDFDRLCEKGGAATGGGRLCQ 1209
            LPFE PCPHT ST T S GRINS M AP FG SPPRE EAPVLI RHYET  D Q SP HG A+ESVH  PDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHT AAPVQQSS  RREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPR AEVRESFRNGMQP PQ GGSAPGSGARHF GGKWEDAEERFLLVERRLRDIVVRALRN ALVGFLEGLET+LGEFTQTKQI TEMP ALRSALASPPKVEVRK         ++AGAG TLLVPLGPSPFHRLLLHALCQYQKLRSKSEET RGRIVRVM+PTS         SGTAFAAPNAPLTEFVLRTRLQD+DRL E+ GAA G GRL Q
Sbjct:    7 LPFELPCPHTDSTSTCSTGRINSAMYAPAFGTSPPRE-EAPVLIARHYETRDDRQRSPSHGGAVESVHHHPDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTSXXXXXXXXXSGTAFAAPNAPLTEFVLRTRLQDYDRLREREGAARGEGRLSQ 415          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 9.970e-34
Identity = 100/261 (38.31%), Postives = 136/261 (52.11%), Query Frame = 1
Query:  268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAH-EEGEAE-------HLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRG 1026
            GAGRA TP R++       + P   ++  AAP+       +EG    Q  GRR+QRRW NDN  G+ K + G       G A+       HL++  +WRSSLGDLV+D   A +R + R G  P P     + GSG + + G  WEDAEERF  + +RLRD+V ++L  + L  ++  +E  L  F   + +P   P  L  AL +P    ++ +AG    A  GV L      SPFHRLLLHA CQY  L SKS+    G
Sbjct:   44 GAGRASTPVRVS---GSRAVTPQRAVY--AAPI----AAAQEGRPS-QHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPA---LSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTP----LQLQAGPKGGARLGVAL----HDSPFHRLLLHAACQYHGLLSKSDAEQGG 283          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A3M6VM59_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM59_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.550e-18
Identity = 75/252 (29.76%), Postives = 123/252 (48.81%), Query Frame = 1
Query:  268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
            G+ RA TPQ+          +    +H    P++ +  + +  E    P G RKQ+RW ND+  G     R      E   EH+ +   WRS+   L  +P+  +++  FR G      N   AP    R+    +W DAE  F  V+RR R +++R+  + A   F+E +E V+  F Q +++P+E+  A          +E+ KE+ K       V L++PL  S FHRL++H++CQ+  +RS++E   R
Sbjct:   66 GSSRARTPQKRGSESPLSRSKRLINIH----PIRSARYLSKPNEL---PLGTRKQQRWYNDHHFGN----RAASTRLEDLMEHMEINVKWRSNFQKLA-EPQNEDLQTEFRQGGGVRENNFFHAP----RNRRKDEWNDAELMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWQEVPSELEVAAPLFFVLKHPIELMKESEKD------VRLILPLLDSAFHRLIIHSVCQFYGIRSRTEANCR 293          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 1.870e-18
Identity = 71/222 (31.98%), Postives = 117/222 (52.70%), Query Frame = 1
Query:  361 PVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNG-MQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
            P++ ++ + +  E    P G+RKQ+RW ND+  G     R      E   EH+++   WRS+   L  +P+  E++ +FR G   P  Q G   P    R      W DAEE FL ++RR R ++VR+ ++ A   F+E +E V+  F Q +++P+E+  A          +E+ K + K       V L++PL  S FHRL++H++CQ+  +RS++E   R
Sbjct:  110 PIRSAAYLSKPNEL---PVGQRKQQRWFNDHHFGN----RVATTRLEDLMEHMSINVEWRSNFQKLA-EPQNQELQTAFRKGKFTPSEQKG--EPKLRRRD----DWNDAEEMFLRIDRRARTLLVRSFQSFA--SFIEAVEYVVLHFIQWREVPSEIEVASGLLRVQTHPMELLKASEKD------VRLVIPLVDSAFHRLIIHSVCQFYGVRSRTEANRR 309          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A484E1D7_BRELC (R3H domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1D7_BRELC)

HSP 1 Score: 95.5 bits (236), Expect = 3.440e-18
Identity = 77/250 (30.80%), Postives = 125/250 (50.00%), Query Frame = 1
Query:  268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPA--LRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSE 1011
            G+ RA TPQ+ +        +    +H    P++ +  + +  E    P   RKQ+RW ND+  G     R      E   EH+ +   WRS+   L  +P+   ++ SFR G       G S P +  R+    KW  AE+ F  V+RR R +++R+  + A   F+E +E V+  F Q +++P+E+  A  L   L  P  +EV  + G S      V L++PL  S FHRL++H++CQ+  +RS++E
Sbjct:   66 GSSRARTPQKCSSGSISSRSKRLVNVH----PMRSAGYLSKPDEL---PLSVRKQQRWFNDHHFGN----RAASTRLEDLMEHMEINVEWRSNFQKLA-EPQNESLQSSFRKG------GGVSDPPAVPRNHRKDKWNGAEKMFARVDRRARTLMLRSFNSFA--SFIEAVECVVLHFIQWREVPSELEVARPLLRMLKHP--IEVTNDVGTS------VRLILPLLDSAFHRLIIHSVCQFYGVRSRTE 287          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: D0MX30_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MX30_PHYIT)

HSP 1 Score: 95.5 bits (236), Expect = 4.220e-18
Identity = 75/252 (29.76%), Postives = 123/252 (48.81%), Query Frame = 1
Query:  268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
            G+ RA TPQ+          +    +H    P++ +  + +  E    P G RKQ+RW ND+  G     R      E   EH+ +   WRS+   L  +P+  +++  FR G      N   AP    R+    +W DAE+ F  V+RR R +++R+  + AL  F+E +E V+  F Q +++P+E+  A          +E+ K   K       V L++PL  S FHRL++H++CQ+  +RS++E   R
Sbjct:   70 GSSRARTPQKRGNESPLARSKRLINIH----PIRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDISVEWRSNFQKLA-EPQNEDLQIEFRKGGGARVNNRPHAP----RNRRTDEWNDAEQMFTRVDRRARTLMLRSFSSFAL--FIEAVEYVVLYFIQWREVPSELEIATPLFRMLKHPIELMKANEKD------VRLILPLLDSAFHRLIIHSVCQFYGVRSRTEANRR 297          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 9.290e-18
Identity = 75/254 (29.53%), Postives = 125/254 (49.21%), Query Frame = 1
Query:  268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMP--PALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
            G+ RA TPQ+          +    +H    P++ +  + +  E    P G RKQ+RW ND+  G     +      E   EH+T+   WRS+   L  +P   +++ +FR G   + QNG + P    +      W DAEE F  ++RR R +++R+   ++ V F+E +E V+  F Q +++P+E+     L   LA P ++    E          V L +PL  S FHRL++H++CQ+  +RS++E   R
Sbjct:   68 GSSRAKTPQKRGDPSPLQKSKRLVNIH----PMRSAPYLIKPNEL---PVGVRKQQRWFNDHHFGN----KAASTRLEDLMEHMTLNVEWRSNFQKLA-EPENKDLQVAFRKGRVQV-QNGSNQP----KWRRKDDWNDAEEMFTRIDRRARTLLMRSF--NSFVDFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNE--------NDVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRR 294          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM)

HSP 1 Score: 94.4 bits (233), Expect = 1.000e-17
Identity = 77/264 (29.17%), Postives = 133/264 (50.38%), Query Frame = 1
Query:  256 SADTGAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRIVRVML 1047
            S D G+ RA TPQ+  R       R   +++  +  ++ +  + +  E    P G RKQ+RW ND+  G     R      E   EH+ +   WRS+   L  +P+  E++  FR G     +N  +AP    R+    +W DAE+ F  V+RR R +++R+  + A   F+E +E V+  F Q +++P+E+  A          +E+ +   K  +      L++PL  S FHRL++H++CQ+  +RS++E  NR    ++M+
Sbjct:   62 SNDNGSSRARTPQK--RGSESPLARSKRLINIHS--IRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLA-EPQNEELQTEFRQGGGAR-ENRSNAP----RNRRKDEWNDAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRANEKDMR------LILPLMDSAFHRLIIHSVCQFYGVRSRTE-ANRRLSTKIMV 299          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: G4YQC7_PHYSP (R3H domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YQC7_PHYSP)

HSP 1 Score: 94.4 bits (233), Expect = 1.050e-17
Identity = 77/262 (29.39%), Postives = 129/262 (49.24%), Query Frame = 1
Query:  244 AVVFSADTGAG--RAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
            AV  S+  G G  RA TPQ+  R       R   +++    P++ +  + +  E    P G RKQ+RW ND+  G     R      E   EH+ +   WRS+   L  +P+  +++  FR G      N   AP    R+    +W +AE+ F  V+RR R +++R+  + A   F+E +E V+  F Q +++P+E+  A          +E+ + + K       V L++PL  S FHRL++H++CQ+  +RS++E   R
Sbjct:   59 AVQRSSSNGNGSSRARTPQK--RGSESPLARSKRLINIH--PIRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLA-EPQNEDLQTEFRKGGGAQENNRPHAP----RNRRKDEWNEAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRASEKD------VRLILPLLDSAFHRLIVHSVCQFYGVRSRTEANRR 296          
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.360e-17
Identity = 65/208 (31.25%), Postives = 105/208 (50.48%), Query Frame = 1
Query:  412 PAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAG---------VTLLVPLGPSPFHRLLLHALCQYQKLRSKS 1008
            P G+R Q R+ ND+  G     R   A  E   EH++V   W+S+  ++++ P   E+ E+FRN  +P      S      R      W +AE  F  V++R R I++     +++  ++E +E V+  F Q  + P+++ P L + LA+P  VE      + ++A +            L++PL  SPFHRLL+HA CQ+  L SKS
Sbjct:   97 PIGKRSQNRYFNDHHFGN----RAATATLEELMEHMSVSVEWKSNF-EILARPENQELAEAFRNVKEPTHARSNSKQNGTHRGKRNDDWTEAENMFTRVDKRARSILLATF--TSMQEYVEAVELVVVHFVQWNEAPSDISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKS 297          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP96_ECTSI3.010e-22785.12R3H domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZHM7_9STRA9.970e-3438.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M6VM59_9STRA1.550e-1829.76Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
K3WHK0_GLOUD1.870e-1831.98R3H domain-containing protein n=1 Tax=Globisporang... [more]
A0A484E1D7_BRELC3.440e-1830.80R3H domain-containing protein n=1 Tax=Bremia lactu... [more]
D0MX30_PHYIT4.220e-1829.76Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A8K1FEI2_PYTOL9.290e-1829.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GQZ4_PHYRM1.000e-1729.17Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4YQC7_PHYSP1.050e-1729.39R3H domain-containing protein n=7 Tax=Phytophthora... [more]
A0A6G0W807_9STRA1.360e-1731.25R3H-assoc domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8074contigEcto-sp13_S_contig8074:2110..6895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score644.4
Seed ortholog evalue3.5e-182
Seed eggNOG ortholog2880.D7FP96
Model size1209
Hectar predicted targeting categoryother localisation
Exons7
EggNOG OGs28Q1N@1,2QWQC@2759
Ec32 ortholog descriptionSingle-stranded nucleic acid binding R3H
Ec32 orthologEc-08_000270.1
Cds size1209
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8074.19414.1prot_Ecto-sp13_S_contig8074.19414.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8074 2110..6895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464080.5388434-CDS-Ecto-sp13_S_contig8074:2109..24321681464080.5388434-CDS-Ecto-sp13_S_contig8074:2109..2432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8074 2110..2432 +
1681464080.5549197-CDS-Ecto-sp13_S_contig8074:3899..40241681464080.5549197-CDS-Ecto-sp13_S_contig8074:3899..4024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8074 3900..4024 +
1681464080.5698416-CDS-Ecto-sp13_S_contig8074:4410..44841681464080.5698416-CDS-Ecto-sp13_S_contig8074:4410..4484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8074 4411..4484 +
1681464080.5857096-CDS-Ecto-sp13_S_contig8074:5111..52711681464080.5857096-CDS-Ecto-sp13_S_contig8074:5111..5271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8074 5112..5271 +
1681464080.5998352-CDS-Ecto-sp13_S_contig8074:5570..56951681464080.5998352-CDS-Ecto-sp13_S_contig8074:5570..5695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8074 5571..5695 +
1681464080.6158488-CDS-Ecto-sp13_S_contig8074:6007..62061681464080.6158488-CDS-Ecto-sp13_S_contig8074:6007..6206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8074 6008..6206 +
1681464080.627103-CDS-Ecto-sp13_S_contig8074:6692..68951681464080.627103-CDS-Ecto-sp13_S_contig8074:6692..6895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8074 6693..6895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8074.19414.1

>prot_Ecto-sp13_S_contig8074.19414.1 ID=prot_Ecto-sp13_S_contig8074.19414.1|Name=mRNA_Ecto-sp13_S_contig8074.19414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp
LPFEHPCPHTVSTFTYSIGRINSTMNAPTFGPSPPREREAPVLITRHYET
GDVQSSPFHGEAIESVHPDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRL
NRTHTPQRLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWEND
NLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFR
NGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRN
SALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKS
SQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRIVRVMLP
TSTSTSPSASTSGTAFAAPNAPLTEFVLRTRLQDFDRLCEKGGAATGGGR
LCQ
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mRNA from alignment at Ecto-sp13_S_contig8074:2110..6895+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8074.19414.1 ID=mRNA_Ecto-sp13_S_contig8074.19414.1|Name=mRNA_Ecto-sp13_S_contig8074.19414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8074:2110..6895+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCCTTTGAGCACCCGTGCCCACACACCGTCAGCACCTTCACGTACTC AATAGGGCGGATAAATTCGACCATGAATGCGCCTACTTTTGGACCGTCAC CTCCCCGAGAAAGGGAAGCTCCCGTGCTGATTACACGTCACTACGAAACA GGAGACGTTCAGAGTTCTCCGTTTCATGGGGAAGCAATTGAGAGTGTCCA TCCTGATGGTCGTACAGGGCATGACGATGAGGATGACAGCCTAGCCGTGG TGTTCTCGGCGGACACCGGCGCCGGGAGGGCCCACACCCCGCAGCGGCTC AACCGCACGCATACCCCGCAAAGGTGATTCCTACGACACCACCTGGCGTG TTGCTTGGCCTATCGGAATTTTTTATTCATTATTGTAAAACGGGAGAGCG GTGCACACTTTTGTATACACTTCGGGACTTTGGGACTGCGGATGATGATG CTGTCGGCTGCTGCATTTGAAAGCTCAAGACACATCATCTCTCCCCAGGG CTCGTGTTGCAGTGTGTGCACAAGCAGTCGTCGTCGCGTTCGCACGCTAG ACGGCTGTTGTTGTTCCACTCATCTGTGCCATGAGTGCTGTGCTTTCCAC GATGCTGTTGAGCGTTCCTCTCGATGACTGCCTGCCCAAAGAACTAAGCT GTTCCTCATGACCTACTGGTTGTGCGTGTGTTCCCCCGCTTCCACGAACC ACGAACCACTAACCACTTCTATTTCCCTCCCCTCCCACTGTTGGGTCAAC AGCACACCCCCTCGGCCCTCTCTCCGACGGCGTCGTTTCCATCACGAAGG TTGTGTGCACTTCAAGTTGGCTGCGACGCGCAGAGAAAATCTGCGGAATA CGTGCCAAACCCTCTCTGTTTCCTTTTGAAGTGATCGCAAGAGCCATAGT AGACGAGTGCTTTGTCCATCGACGACGCTAAAGGCGTCTTGCCCACTGAG AGAGAGCTCATGCTCATGGGAGAAAGCGTTCTACAATAACGAGAATATGT GGTTGACCGCCGACCCTTAGCATTAACATGAATATGACACATACCTTGGA GCTGCTGTTCGTGACAGGTGTTGTTTGGAAACAGCAGGATCTAAAAGGTC AACCGTAGTGTCCTACAGCTGTAGTAGCAACAGACGCCGGGGCAGGCAAC GAGTGAAGCAGAAAGGTTTTTGAAACTCCGCAGTCTGTAGGCATATCTTC ATTTTTTTTTTTTGCGAATGATACCGGACAGAATTTCTGCAACGTCAAAC ACTCTTCCAGATTTGAAATTACTAAGGATGCAGGTCAACATGCATCCAAC AAGCAGAGCTGCTGCTGTAGATTCAGTGGCAGAGTACGCATCTTGTCGCC GGCGCACCGAGGGCCAGGCACCCGTAGCCTTCGCAGTTTTTTGTTCAAAT AGACATGTTGGATACAACATACAATGGTGGGAGTTTTGTCAGGGTTGGGG TTAGGGTCTGCGTCCCCCCTCCCTGTCCTATTTCCTTATAATACTTCATT TCCTGCAAAGGTGGTCCCCAAGCACTCAACTCCGGGATGACGACCCCAGG CACCTTATGATGTCTTGACCAAAAAGACTTATAAGGACGTTTTGTTCTTT GGAACTCCTGATTACATACACTCCTGCCGACACCTTTTGCAAAAAAAAAA GACGTGGGCCCGTTTCACGAGCAGCCTGCCTGGTGTATCGGCGTAGGGCC GTCGGTGACCCACTTGGTCGGTTGACGTCGTGCGATGCTACCATGCGCTG ACGCGACCGACTTTTTTTGTTCGCGGCATCGTGCAAACAGGCTTCGGCCG TCCAGCATCCTGCACACTACCGCGGCCCCCGTGCAGCAGTCATCGGTGAT AAGGAGAGAGGGAGAATCAAGGCGGCAGCCAGCGGGCCGAAGGAAGCAAA GGCGGTGGGAAAACGGTAAGGGAGAGAGGTGTCACGTTTTTCCATGTGCC ATGCATGTCTCATAATGTGCCGCGCGCTGTTTGCCACGACTAAGCCTCGG CGCATGCGGTCAGGAAGTCGTTGCGCAAATGTTCCACTTTGGTTTAAGCA TACCCCGGTTGTCAGTGAGACAAGACCAATGAGATGCCTCAGCGTTTTGG TTGCCTCCGCAGCGGTCGGCAACGCGAGCATCGCACCAGTAGCTTTCAGA AAGAGTTTATGATTGCACAAGGCCATGACGAAACGAAAGTCTGCACAACG ACGCATCACAACTGGTGTCATGCTGTAGTGAGAAGCACCGGTCCGGTTGC TTGCCACCGGCGATTCCTTCAAAATAACACCACCAGCATTCTCACCCGCA GATAATCTTCTCGGGGTGGAGAAGTTTCTGCGGGGGCGCCACGCCCACGA AGAGGGAGAGGCCGAGCATCTCACGGTGCGCAGTACTGGAAGACTGTTTT ATTTTACTCGGTACATGAGATGAGAAGGTTGTTGAAGACCTACCGTGTTG AGGTTTCTTCGCAGAAATCTCACGACCTCGCGAATTGACAGCGCTTGCGT ATTGCAAGGAGCACACCGTCCCTATCCATTGAATATCAAGGCCGGTGGTT CCACGTAAAAAAACGTTTTGCTATTTCACTACGGTTAACTTCCTTGGGAT TCCCCTGGGGAAGAGGATTGTTTTCGTGCATCTACACTCCCCGCGGGGTA TGTGCAGATGCACCCCCTTTGGTTCACCACTAACCCTAACCCTGACCCTA ACCCACGAAAGGAAAGAAAAACGAAAACATCCACGCACACACGCTGCATC ATTGTTTTACAAGATTTTTCAGGCAGAGAATCGCGACGTTTATTGCGGCG GAACCTCGTCGACCGTCATCATCCCGTTCGACCGATCTTCCTGTCTGTCG AGCCCCTCTCCGACGATAGGTTGACACAGCAATTTGGCGGAGACTGGGGT GGTATCCATGTCATTGCTCCCGACTGCGGCCGTACGATTGTAGCGGTGGT CGGCAACGTTAGTGACACCTTGCCTGCCCGAATTCCTCTGCCCGACTCGT AGGTGAAGCACACGTGGCGCTCCAGCCTGGGGGACCTGGTGTCCGACCCA AGGGTAGCGGAGGTCCGAGAGAGCTTTCGGAACGGCATGCAGCCGATGCC GCAGAATGGGGGTAGTGCTCCCGGGTCGGGAGCAAGGCATTTCGCGGGGG GAAAGTGGGAAGGTGGGTTGTTTTCCTGTCTTGGGATTTGGGTGTTCTCT GTCGTTGCTCCTTCGATTTTTGCATTTGTTCTGTTTCGGCGGTGTCCCAG CTGCAATTGTATCATTTGTTCTCTCTCCCTATGCATGAACTGGGTTTTGT TCGTCGCAAGTCAATGTCCTCCAACGATGATCATGACCGAGGACGTATTC GAAAACGTACCCTCCCGTGGTCAGCACTGAACATTTTCACCCGATTCAGG GTTTCGCCTCGTGCTACGTCCTCGTCCTTGCTCAACCTGCTTGCCTGTCT GCCTATCCCAGATGCAGAAGAGAGGTTTCTGTTGGTAGAGCGTCGTCTCA GGGACATTGTTGTTCGGGCGTTGCGCAACTCCGCTCTTGTGGGCTTCCTG GAGGGGCTGGAAACCGTGCTAGGAGAATTCACTCAGGTGTGTTCTGGTGG GTTGCGATAAAACATGCCGAACCACAGGTTACAGAAGGAAGACGGCCTGT ATAGAACGGCCGAGGTCGTAAGCAGCTACCAAGCTACCCTAGTGCGCCGC AAATATTCTCAAGGCGTTTGTGCTCCCAGCCGGATGGAATCGTCAGTACT GTACCATCTGTAACCCCCAGGCGGCGCTAGCCGTGGTACAGTTGCTCTCG GCTGGATGGGCGTTGCCAGTAACAAGGCTGTTTACTCCCGTCCCCTTCCG CTCTATATGCTATCCTCCCTCACCGTAATGTTTCGTCGATCCACGCAGAC GAAGCAGATACCGACGGAAATGCCACCGGCGCTGCGCTCGGCGTTGGCCT CACCCCCCAAAGTAGAGGTCAGAAAGGAGGCGGGAAAGTCATCGCAGGCC GGAGCCGGAGTCACGCTCCTGGTGCCCCTAGGCCCGTCTCCGTTCCACCG GCTGTTGCTGCATGCCCTGTGCCAGTACCAGAAGCTTCGTTCGAAGAGTG AGTCGTGGGAACGAAATTGTTCCGCGTTGCTGGGGCTATCGTGGCCTGCC CCTCTTTAACTCCCTGCCCCTGCAACTTTGTGCTTTTTCGTATGATGTTG TTTTGGGTGCTTTGCGTAGTACGTTGCCCTCACCACATTGATGGTCCCTG TAAAAGGCGGCATACAGTACGGGCATTATTCAGAGCACGACCTTGCAAAC TCCATCTGCGTCACGCGATTTTACCGGCCTTGCACGTACTGGGACCACGC TTGTTGCTACCTGAAGAGTTGTTTATACTCTCAAGTTTATTGTTGTCTCT AAAAGCACATGCTTGCTCTCGTCGCGGTCGGTCTTTGTTACTGTCGCTGT GCGTCGAACGCGCAATTATCCTCTCACTAAACACTTCCGACTACAACAGT ACCTTTTGGTCGGATCTAACCTGATGTGATTGGTGGACCCTTTTGCACAC TATTAACACTATGAACACTTTTGATAATGACAGGCGAAGAGACGAACAGA GGCCGCATCGTTCGCGTTATGCTCCCTACATCAACATCGACATCACCTTC AGCATCGACATCTGGCACCGCGTTTGCCGCACCCAACGCGCCCCTCACGG AGTTCGTGCTCAGGACCAGGCTACAGGATTTCGATCGCCTTTGTGAAAAG GGGGGTGCGGCCACGGGAGGGGGTAGGCTCTGTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8074:2110..6895+

>mRNA_Ecto-sp13_S_contig8074.19414.1 ID=mRNA_Ecto-sp13_S_contig8074.19414.1|Name=mRNA_Ecto-sp13_S_contig8074.19414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8074:2110..6895+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCCTTTGAGCACCCGTGCCCACACACCGTCAGCACCTTCACGTACTC
AATAGGGCGGATAAATTCGACCATGAATGCGCCTACTTTTGGACCGTCAC
CTCCCCGAGAAAGGGAAGCTCCCGTGCTGATTACACGTCACTACGAAACA
GGAGACGTTCAGAGTTCTCCGTTTCATGGGGAAGCAATTGAGAGTGTCCA
TCCTGATGGTCGTACAGGGCATGACGATGAGGATGACAGCCTAGCCGTGG
TGTTCTCGGCGGACACCGGCGCCGGGAGGGCCCACACCCCGCAGCGGCTC
AACCGCACGCATACCCCGCAAAGGCTTCGGCCGTCCAGCATCCTGCACAC
TACCGCGGCCCCCGTGCAGCAGTCATCGGTGATAAGGAGAGAGGGAGAAT
CAAGGCGGCAGCCAGCGGGCCGAAGGAAGCAAAGGCGGTGGGAAAACGAT
AATCTTCTCGGGGTGGAGAAGTTTCTGCGGGGGCGCCACGCCCACGAAGA
GGGAGAGGCCGAGCATCTCACGGTGAAGCACACGTGGCGCTCCAGCCTGG
GGGACCTGGTGTCCGACCCAAGGGTAGCGGAGGTCCGAGAGAGCTTTCGG
AACGGCATGCAGCCGATGCCGCAGAATGGGGGTAGTGCTCCCGGGTCGGG
AGCAAGGCATTTCGCGGGGGGAAAGTGGGAAGATGCAGAAGAGAGGTTTC
TGTTGGTAGAGCGTCGTCTCAGGGACATTGTTGTTCGGGCGTTGCGCAAC
TCCGCTCTTGTGGGCTTCCTGGAGGGGCTGGAAACCGTGCTAGGAGAATT
CACTCAGACGAAGCAGATACCGACGGAAATGCCACCGGCGCTGCGCTCGG
CGTTGGCCTCACCCCCCAAAGTAGAGGTCAGAAAGGAGGCGGGAAAGTCA
TCGCAGGCCGGAGCCGGAGTCACGCTCCTGGTGCCCCTAGGCCCGTCTCC
GTTCCACCGGCTGTTGCTGCATGCCCTGTGCCAGTACCAGAAGCTTCGTT
CGAAGAGCGAAGAGACGAACAGAGGCCGCATCGTTCGCGTTATGCTCCCT
ACATCAACATCGACATCACCTTCAGCATCGACATCTGGCACCGCGTTTGC
CGCACCCAACGCGCCCCTCACGGAGTTCGTGCTCAGGACCAGGCTACAGG
ATTTCGATCGCCTTTGTGAAAAGGGGGGTGCGGCCACGGGAGGGGGTAGG
CTCTGTCAG
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