mRNA_Ecto-sp13_S_contig8074.19414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI) HSP 1 Score: 637 bits (1642), Expect = 3.010e-227 Identity = 349/410 (85.12%), Postives = 356/410 (86.83%), Query Frame = 1
Query: 1 LPFEHPCPHTVSTFTYSIGRINSTMNAPTFGPSPPREREAPVLITRHYET-GDVQSSPFHGEAIESVH--PDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKS----SQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRIVRVMLPTSTSTSPSASTSGTAFAAPNAPLTEFVLRTRLQDFDRLCEKGGAATGGGRLCQ 1209
LPFE PCPHT ST T S GRINS M AP FG SPPRE EAPVLI RHYET D Q SP HG A+ESVH PDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHT AAPVQQSS RREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPR AEVRESFRNGMQP PQ GGSAPGSGARHF GGKWEDAEERFLLVERRLRDIVVRALRN ALVGFLEGLET+LGEFTQTKQI TEMP ALRSALASPPKVEVRK ++AGAG TLLVPLGPSPFHRLLLHALCQYQKLRSKSEET RGRIVRVM+PTS SGTAFAAPNAPLTEFVLRTRLQD+DRL E+ GAA G GRL Q
Sbjct: 7 LPFELPCPHTDSTSTCSTGRINSAMYAPAFGTSPPRE-EAPVLIARHYETRDDRQRSPSHGGAVESVHHHPDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTSXXXXXXXXXSGTAFAAPNAPLTEFVLRTRLQDYDRLREREGAARGEGRLSQ 415
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA) HSP 1 Score: 139 bits (349), Expect = 9.970e-34 Identity = 100/261 (38.31%), Postives = 136/261 (52.11%), Query Frame = 1
Query: 268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAH-EEGEAE-------HLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRG 1026
GAGRA TP R++ + P ++ AAP+ +EG Q GRR+QRRW NDN G+ K + G G A+ HL++ +WRSSLGDLV+D A +R + R G P P + GSG + + G WEDAEERF + +RLRD+V ++L + L ++ +E L F + +P P L AL +P ++ +AG A GV L SPFHRLLLHA CQY L SKS+ G
Sbjct: 44 GAGRASTPVRVS---GSRAVTPQRAVY--AAPI----AAAQEGRPS-QHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPA---LSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTP----LQLQAGPKGGARLGVAL----HDSPFHRLLLHAACQYHGLLSKSDAEQGG 283
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A3M6VM59_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM59_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.550e-18 Identity = 75/252 (29.76%), Postives = 123/252 (48.81%), Query Frame = 1
Query: 268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
G+ RA TPQ+ + +H P++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ +++ FR G N AP R+ +W DAE F V+RR R +++R+ + A F+E +E V+ F Q +++P+E+ A +E+ KE+ K V L++PL S FHRL++H++CQ+ +RS++E R
Sbjct: 66 GSSRARTPQKRGSESPLSRSKRLINIH----PIRSARYLSKPNEL---PLGTRKQQRWYNDHHFGN----RAASTRLEDLMEHMEINVKWRSNFQKLA-EPQNEDLQTEFRQGGGVRENNFFHAP----RNRRKDEWNDAELMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWQEVPSELEVAAPLFFVLKHPIELMKESEKD------VRLILPLLDSAFHRLIIHSVCQFYGIRSRTEANCR 293
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD) HSP 1 Score: 96.7 bits (239), Expect = 1.870e-18 Identity = 71/222 (31.98%), Postives = 117/222 (52.70%), Query Frame = 1
Query: 361 PVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNG-MQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
P++ ++ + + E P G+RKQ+RW ND+ G R E EH+++ WRS+ L +P+ E++ +FR G P Q G P R W DAEE FL ++RR R ++VR+ ++ A F+E +E V+ F Q +++P+E+ A +E+ K + K V L++PL S FHRL++H++CQ+ +RS++E R
Sbjct: 110 PIRSAAYLSKPNEL---PVGQRKQQRWFNDHHFGN----RVATTRLEDLMEHMSINVEWRSNFQKLA-EPQNQELQTAFRKGKFTPSEQKG--EPKLRRRD----DWNDAEEMFLRIDRRARTLLVRSFQSFA--SFIEAVEYVVLHFIQWREVPSEIEVASGLLRVQTHPMELLKASEKD------VRLVIPLVDSAFHRLIIHSVCQFYGVRSRTEANRR 309
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A484E1D7_BRELC (R3H domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1D7_BRELC) HSP 1 Score: 95.5 bits (236), Expect = 3.440e-18 Identity = 77/250 (30.80%), Postives = 125/250 (50.00%), Query Frame = 1
Query: 268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPA--LRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSE 1011
G+ RA TPQ+ + + +H P++ + + + E P RKQ+RW ND+ G R E EH+ + WRS+ L +P+ ++ SFR G G S P + R+ KW AE+ F V+RR R +++R+ + A F+E +E V+ F Q +++P+E+ A L L P +EV + G S V L++PL S FHRL++H++CQ+ +RS++E
Sbjct: 66 GSSRARTPQKCSSGSISSRSKRLVNVH----PMRSAGYLSKPDEL---PLSVRKQQRWFNDHHFGN----RAASTRLEDLMEHMEINVEWRSNFQKLA-EPQNESLQSSFRKG------GGVSDPPAVPRNHRKDKWNGAEKMFARVDRRARTLMLRSFNSFA--SFIEAVECVVLHFIQWREVPSELEVARPLLRMLKHP--IEVTNDVGTS------VRLILPLLDSAFHRLIIHSVCQFYGVRSRTE 287
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: D0MX30_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MX30_PHYIT) HSP 1 Score: 95.5 bits (236), Expect = 4.220e-18 Identity = 75/252 (29.76%), Postives = 123/252 (48.81%), Query Frame = 1
Query: 268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
G+ RA TPQ+ + +H P++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ +++ FR G N AP R+ +W DAE+ F V+RR R +++R+ + AL F+E +E V+ F Q +++P+E+ A +E+ K K V L++PL S FHRL++H++CQ+ +RS++E R
Sbjct: 70 GSSRARTPQKRGNESPLARSKRLINIH----PIRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDISVEWRSNFQKLA-EPQNEDLQIEFRKGGGARVNNRPHAP----RNRRTDEWNDAEQMFTRVDRRARTLMLRSFSSFAL--FIEAVEYVVLYFIQWREVPSELEIATPLFRMLKHPIELMKANEKD------VRLILPLLDSAFHRLIIHSVCQFYGVRSRTEANRR 297
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL) HSP 1 Score: 94.4 bits (233), Expect = 9.290e-18 Identity = 75/254 (29.53%), Postives = 125/254 (49.21%), Query Frame = 1
Query: 268 GAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMP--PALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
G+ RA TPQ+ + +H P++ + + + E P G RKQ+RW ND+ G + E EH+T+ WRS+ L +P +++ +FR G + QNG + P + W DAEE F ++RR R +++R+ ++ V F+E +E V+ F Q +++P+E+ L LA P ++ E V L +PL S FHRL++H++CQ+ +RS++E R
Sbjct: 68 GSSRAKTPQKRGDPSPLQKSKRLVNIH----PMRSAPYLIKPNEL---PVGVRKQQRWFNDHHFGN----KAASTRLEDLMEHMTLNVEWRSNFQKLA-EPENKDLQVAFRKGRVQV-QNGSNQP----KWRRKDDWNDAEEMFTRIDRRARTLLMRSF--NSFVDFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNE--------NDVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRR 294
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM) HSP 1 Score: 94.4 bits (233), Expect = 1.000e-17 Identity = 77/264 (29.17%), Postives = 133/264 (50.38%), Query Frame = 1
Query: 256 SADTGAGRAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNRGRIVRVML 1047
S D G+ RA TPQ+ R R +++ + ++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ E++ FR G +N +AP R+ +W DAE+ F V+RR R +++R+ + A F+E +E V+ F Q +++P+E+ A +E+ + K + L++PL S FHRL++H++CQ+ +RS++E NR ++M+
Sbjct: 62 SNDNGSSRARTPQK--RGSESPLARSKRLINIHS--IRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLA-EPQNEELQTEFRQGGGAR-ENRSNAP----RNRRKDEWNDAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRANEKDMR------LILPLMDSAFHRLIIHSVCQFYGVRSRTE-ANRRLSTKIMV 299
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: G4YQC7_PHYSP (R3H domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YQC7_PHYSP) HSP 1 Score: 94.4 bits (233), Expect = 1.050e-17 Identity = 77/262 (29.39%), Postives = 129/262 (49.24%), Query Frame = 1
Query: 244 AVVFSADTGAG--RAHTPQRLNRXXXXXXLRPSSILHTTAAPVQQSSVIRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAGVTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETNR 1023
AV S+ G G RA TPQ+ R R +++ P++ + + + E P G RKQ+RW ND+ G R E EH+ + WRS+ L +P+ +++ FR G N AP R+ +W +AE+ F V+RR R +++R+ + A F+E +E V+ F Q +++P+E+ A +E+ + + K V L++PL S FHRL++H++CQ+ +RS++E R
Sbjct: 59 AVQRSSSNGNGSSRARTPQK--RGSESPLARSKRLINIH--PIRSAGYLSKPNEL---PVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLA-EPQNEDLQTEFRKGGGAQENNRPHAP----RNRRKDEWNEAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRASEKD------VRLILPLLDSAFHRLIVHSVCQFYGVRSRTEANRR 296
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.360e-17 Identity = 65/208 (31.25%), Postives = 105/208 (50.48%), Query Frame = 1
Query: 412 PAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRVAEVRESFRNGMQPMPQNGGSAPGSGARHFAGGKWEDAEERFLLVERRLRDIVVRALRNSALVGFLEGLETVLGEFTQTKQIPTEMPPALRSALASPPKVEVRKEAGKSSQAGAG---------VTLLVPLGPSPFHRLLLHALCQYQKLRSKS 1008
P G+R Q R+ ND+ G R A E EH++V W+S+ ++++ P E+ E+FRN +P S R W +AE F V++R R I++ +++ ++E +E V+ F Q + P+++ P L + LA+P VE + ++A + L++PL SPFHRLL+HA CQ+ L SKS
Sbjct: 97 PIGKRSQNRYFNDHHFGN----RAATATLEELMEHMSVSVEWKSNF-EILARPENQELAEAFRNVKEPTHARSNSKQNGTHRGKRNDDWTEAENMFTRVDKRARSILLATF--TSMQEYVEAVELVVVHFVQWNEAPSDISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKS 297 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8074.19414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8074.19414.1 >prot_Ecto-sp13_S_contig8074.19414.1 ID=prot_Ecto-sp13_S_contig8074.19414.1|Name=mRNA_Ecto-sp13_S_contig8074.19414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp LPFEHPCPHTVSTFTYSIGRINSTMNAPTFGPSPPREREAPVLITRHYETback to top mRNA from alignment at Ecto-sp13_S_contig8074:2110..6895+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8074.19414.1 ID=mRNA_Ecto-sp13_S_contig8074.19414.1|Name=mRNA_Ecto-sp13_S_contig8074.19414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8074:2110..6895+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8074:2110..6895+ >mRNA_Ecto-sp13_S_contig8074.19414.1 ID=mRNA_Ecto-sp13_S_contig8074.19414.1|Name=mRNA_Ecto-sp13_S_contig8074.19414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8074:2110..6895+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |