mRNA_Ecto-sp13_S_contig8070.19410.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8070.19410.1
Unique Name	mRNA_Ecto-sp13_S_contig8070.19410.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: D8LTU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU7_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 1.260e-68
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 297
            WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGP NSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE
Sbjct:  279 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPVNSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 377

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: D8LTU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.300e-56
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 297
            WADSYSVG KCYMQTTFDH IGEVEVDTPQGTMKIEDLF LLEPGPGSEGRPLYNDIQCGNGP NSD++ DE +CPGLVEYG EGCGQIGP+WDLSELE
Sbjct:  788 WADSYSVGSKCYMQTTFDHGIGEVEVDTPQGTMKIEDLFFLLEPGPGSEGRPLYNDIQCGNGPVNSDNILDEIVCPGLVEYGIEGCGQIGPLWDLSELE 886

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: A0A6H5JZU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU9_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.300e-47
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 297
            W+DSYSVG KCYMQTTFDHDIGEV VD PQG MKI +LF+LLE GPGS+ +PLYNDIQC NGP NS  + D+ LCPGLV+YG + CGQIGP+ DLSELE
Sbjct:  169 WSDSYSVGSKCYMQTTFDHDIGEVVVDPPQGPMKIGELFDLLELGPGSQDQPLYNDIQCENGPTNSHQILDKILCPGLVQYGIKDCGQIGPLRDLSELE 267

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: A0A6H5K2N3_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N3_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 3.870e-46
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 297
            WADSYSVG KCYM TTFDH IGE  VDTP G MKI DL+++LE GPGS G PLYNDIQCGNGPAN  +  DE  CPGLV  G EGCGQIGP WDLSELE
Sbjct:  167 WADSYSVGSKCYMSTTFDHGIGEQLVDTPIGEMKIRDLYDMLEKGPGSAGHPLYNDIQCGNGPANDAA--DETNCPGLVMEGPEGCGQIGPKWDLSELE 263

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: D7FZB0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB0_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.650e-45
Identity = 73/98 (74.49%), Postives = 78/98 (79.59%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 294
            WADSYSVG KCYM TTFDH IGE  VDTP G +KI DL+++LE GPGS GRPLYNDIQCGNGPAN  +  DE  CPGLV  G EGCGQIGP WDLSEL
Sbjct:  173 WADSYSVGSKCYMSTTFDHGIGEELVDTPIGEVKIRDLYDMLEAGPGSVGRPLYNDIQCGNGPANDAA--DETECPGLVMEGPEGCGQIGPKWDLSEL 268

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: D8LNN0_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN0_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 4.720e-45
Identity = 72/98 (73.47%), Postives = 77/98 (78.57%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 294
            WADSYSVG KCYM TTFDH IGE  VDTP G MKI DL+++L+ GPGS GRPLYNDIQCGNGPAN  +  DE  CPGLV  G  GCGQIGP WDLSEL
Sbjct:  195 WADSYSVGSKCYMSTTFDHGIGEEVVDTPIGEMKIRDLYDMLQAGPGSAGRPLYNDIQCGNGPANDAA--DETECPGLVTEGEAGCGQIGPKWDLSEL 290

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: B7GED4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GED4_PHATC)

HSP 1 Score: 140 bits (352), Expect = 3.330e-38
Identity = 62/99 (62.63%), Postives = 71/99 (71.72%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 297
            WADSYS G KCY  TTFDHDI +V V+TPQG M I     LL PGPG EGRP+YNDIQCGNGP N+   GDE +CPG  + G EGCGQIGP W+   ++
Sbjct:  222 WADSYSFGNKCYCATTFDHDIADVLVETPQGWMTIRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDLGPEGCGQIGPRWNFDAIK 318

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: B7G9L2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9L2_PHATC)

HSP 1 Score: 132 bits (333), Expect = 3.410e-34
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 294
            WADSYSV  KCY  TTFDH + +V V+TP+G M       LL PGPG EGRP+YNDIQCGNGP N+   GDE +CPG  + G EGCGQIGP W+   +
Sbjct:  182 WADSYSVNDKCYCATTFDHSVADVIVETPRGRMTTRQACELLGPGPGIEGRPVYNDIQCGNGPPNN--AGDEHVCPGRTDIGPEGCGQIGPRWNFDAV 277

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: UPI0003652934 (DUF5060 domain-containing protein n=1 Tax=Microbulbifer variabilis TaxID=266805 RepID=UPI0003652934)

HSP 1 Score: 130 bits (328), Expect = 3.160e-33
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSEL 294
            W DSYS+G +C+ ++ FDH++ ++ V T  GTM +++  +L+ PGPGS GRP YNDIQCGNGPAN    GDE  CPG V+ G+EGCG IGP+W+  +L
Sbjct:  800 WMDSYSIGDQCFCESNFDHNVADIMVSTDHGTMTVKEACDLIGPGPGSAGRPKYNDIQCGNGPAND--AGDENYCPGRVDIGKEGCGHIGPIWNFDKL 895

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BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Match: A0A510IPQ9_9GAMM (Uncharacterized protein n=1 Tax=Microbulbifer sp. GL-2 TaxID=2591606 RepID=A0A510IPQ9_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 2.780e-32
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 1

Query:    1 WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEGRPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE 297
            W DSYS+G +C+  + FDH+I +V V T QG M +++   L+ PGPGS GRP YND+QCGNGPAN    GDE  CPG V+ G++GCG IGP+W+ ++++
Sbjct:  804 WKDSYSIGDQCFCDSNFDHNIADVMVSTDQGYMTVKEACALIGPGPGSSGRPKYNDVQCGNGPAND--AGDEDYCPGRVDIGKDGCGHIGPIWNFNKID 900

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8070.19410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LTU7_ECTSI	1.260e-68	98.99	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LTU8_ECTSI	1.300e-56	88.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JZU9_9PHAE	1.300e-47	73.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2N3_9PHAE	3.870e-46	74.75	WSC domain-containing protein n=2 Tax=Ectocarpus s...	[more]
D7FZB0_ECTSI	2.650e-45	74.49	WSC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LNN0_ECTSI	4.720e-45	73.47	WSC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
B7GED4_PHATC	3.330e-38	62.63	Predicted protein n=1 Tax=Phaeodactylum tricornutu...	[more]
B7G9L2_PHATC	3.410e-34	59.18	Predicted protein n=1 Tax=Phaeodactylum tricornutu...	[more]
UPI0003652934	3.160e-33	54.08	DUF5060 domain-containing protein n=1 Tax=Microbul...	[more]
A0A510IPQ9_9GAMM	2.780e-32	52.53	Uncharacterized protein n=1 Tax=Microbulbifer sp. ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8070	contig	Ecto-sp13_S_contig8070:479..778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	220.7
Seed ortholog evalue	3.1e-55
Seed eggNOG ortholog	2880.D8LTU7
Model size	300
Hectar predicted targeting category	other localisation
Exons	1
EggNOG OGs	2EPZM@1,2ST37@2759
Cds size	300
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464080.1332479-CDS-Ecto-sp13_S_contig8070:478..778	1681464080.1332479-CDS-Ecto-sp13_S_contig8070:478..778	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8070 479..778 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8070.19410.1	prot_Ecto-sp13_S_contig8070.19410.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8070 479..778 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8070:479..778+
coding sequence from alignment at Ecto-sp13_S_contig8070:479..778+

protein sequence of mRNA_Ecto-sp13_S_contig8070.19410.1

>prot_Ecto-sp13_S_contig8070.19410.1 ID=prot_Ecto-sp13_S_contig8070.19410.1|Name=mRNA_Ecto-sp13_S_contig8070.19410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
WADSYSVGGKCYMQTTFDHDIGEVEVDTPQGTMKIEDLFNLLEPGPGSEG
RPLYNDIQCGNGPANSDSLGDEFLCPGLVEYGREGCGQIGPMWDLSELE*

mRNA from alignment at Ecto-sp13_S_contig8070:479..778+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8070.19410.1 ID=mRNA_Ecto-sp13_S_contig8070.19410.1|Name=mRNA_Ecto-sp13_S_contig8070.19410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8070:479..778+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGCTGACAGCTACTCGGTCGGTGGAAAGTGCTACATGCAGACCACGTT
CGATCACGACATCGGTGAGGTGGAGGTGGACACACCGCAAGGCACCATGA
AAATCGAAGATCTCTTCAATCTTCTAGAACCAGGACCGGGATCTGAAGGC
CGACCCCTCTACAACGACATTCAATGCGGAAATGGCCCAGCCAATTCCGA
TTCCTTAGGCGACGAGTTCCTCTGCCCCGGTCTGGTGGAATACGGCCGGG
AAGGATGCGGACAGATTGGTCCAATGTGGGACCTCTCTGAGCTTGAGTAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8070:479..778+

>mRNA_Ecto-sp13_S_contig8070.19410.1 ID=mRNA_Ecto-sp13_S_contig8070.19410.1|Name=mRNA_Ecto-sp13_S_contig8070.19410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8070:479..778+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGCTGACAGCTACTCGGTCGGTGGAAAGTGCTACATGCAGACCACGTT
CGATCACGACATCGGTGAGGTGGAGGTGGACACACCGCAAGGCACCATGA
AAATCGAAGATCTCTTCAATCTTCTAGAACCAGGACCGGGATCTGAAGGC
CGACCCCTCTACAACGACATTCAATGCGGAAATGGCCCAGCCAATTCCGA
TTCCTTAGGCGACGAGTTCCTCTGCCCCGGTCTGGTGGAATACGGCCGGG
AAGGATGCGGACAGATTGGTCCAATGTGGGACCTCTCTGAGCTTGAGTAA