mRNA_Ecto-sp13_S_contig80693.19409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80693.19409.1
Unique NamemRNA_Ecto-sp13_S_contig80693.19409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A6H5KDD3_9PHAE (Serine O-acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.180e-23
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPTIGDRVVLGAGAK+LGDITVEDDVLVGANSVVTKSVPKHHTAVG
Sbjct:  141 GKRHPTIGDRVVLGAGAKILGDITVEDDVLVGANSVVTKSVPKHHTAVG 189
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: D7FY76_ECTSI (Serine O-acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY76_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.840e-23
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPTIGDRVVLGAGAK+LGDIT+EDDVLVGANSVVTKSVPKHHTAVG
Sbjct:  143 GKRHPTIGDRVVLGAGAKILGDITIEDDVLVGANSVVTKSVPKHHTAVG 191
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A847K6V8_9ACTO (Serine acetyltransferase n=1 Tax=Actinomycetaceae bacterium TaxID=1898202 RepID=A0A847K6V8_9ACTO)

HSP 1 Score: 73.2 bits (178), Expect = 1.160e-14
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPT+G+RVV+G+GAKVLG I + DDV +GAN+VV K VP  HTAVG
Sbjct:  130 GKRHPTVGNRVVIGSGAKVLGPIEIGDDVAIGANAVVVKDVPDAHTAVG 178
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A840ERW3_9ACTN (Serine acetyltransferase n=6 Tax=Gordonia TaxID=2053 RepID=A0A840ERW3_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 1.790e-14
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPT+GDRV++GAGAKVLG IT+ DD  VGAN+VV + VP  H AVG
Sbjct:  122 GKRHPTVGDRVLIGAGAKVLGPITLGDDAKVGANAVVVRDVPSGHVAVG 170
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A354CXM9_9BACT (Serine acetyltransferase n=3 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A354CXM9_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 2.050e-14
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPTIG RVV+GAGAKVLG+IT+ DD ++GAN+VV + VP+H T VG
Sbjct:  137 GKRHPTIGRRVVIGAGAKVLGNITIGDDSVIGANAVVIRDVPQHSTVVG 185
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: UPI001C0E5164 (serine O-acetyltransferase n=1 Tax=Collinsella sp. zg1085 TaxID=2844380 RepID=UPI001C0E5164)

HSP 1 Score: 72.8 bits (177), Expect = 2.570e-14
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPT+GDRVV+G GAKVLG+IT+ +DV +G NSVV K VP H T VG
Sbjct:  116 GKRHPTLGDRVVVGTGAKVLGNITIANDVRIGGNSVVVKDVPAHCTVVG 164
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A386PCM2_CLOSE (Serine acetyltransferase n=3 Tax=Clostridium TaxID=1485 RepID=A0A386PCM2_CLOSE)

HSP 1 Score: 71.6 bits (174), Expect = 3.680e-14
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPT+G+RV++GAGAKVLG IT+ DD  VGAN+VV K VPK  TAVG
Sbjct:  114 GKRHPTVGNRVIIGAGAKVLGPITLGDDCKVGANTVVLKDVPKGATAVG 162
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A7K0PBW7_9ACTN (Serine acetyltransferase n=3 Tax=root TaxID=1 RepID=A0A7K0PBW7_9ACTN)

HSP 1 Score: 72.0 bits (175), Expect = 6.370e-14
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPT+GDRV +G+GAK+LG ITVEDD  VGANSVV   VP++ T VG
Sbjct:  125 GKRHPTVGDRVTIGSGAKLLGPITVEDDAKVGANSVVITDVPRNSTVVG 173
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A2H0LI65_9BACT (Serine acetyltransferase n=1 Tax=Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_63_9 TaxID=1974749 RepID=A0A2H0LI65_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 6.850e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPTIGD VV+GAGAK+LG+ITV  D ++GAN+VV + VP+H T VG
Sbjct:  131 GKRHPTIGDNVVIGAGAKILGNITVGRDSMIGANAVVIRDVPEHSTVVG 179
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BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Match: A0A1J5RSB4_9ZZZZ (Serine O-acetyltransferase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5RSB4_9ZZZZ)

HSP 1 Score: 72.0 bits (175), Expect = 6.930e-14
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG 147
            GKRHPT+GD VV+GAGAK+LG IT+ D V VGANSVV K VP H T VG
Sbjct:  132 GKRHPTLGDGVVVGAGAKILGAITLGDQVRVGANSVVVKDVPSHRTVVG 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80693.19409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDD3_9PHAE2.180e-2397.96Serine O-acetyltransferase n=1 Tax=Ectocarpus sp. ... [more]
D7FY76_ECTSI2.840e-2395.92Serine O-acetyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A847K6V8_9ACTO1.160e-1469.39Serine acetyltransferase n=1 Tax=Actinomycetaceae ... [more]
A0A840ERW3_9ACTN1.790e-1469.39Serine acetyltransferase n=6 Tax=Gordonia TaxID=20... [more]
A0A354CXM9_9BACT2.050e-1469.39Serine acetyltransferase n=3 Tax=unclassified Cand... [more]
UPI001C0E51642.570e-1469.39serine O-acetyltransferase n=1 Tax=Collinsella sp.... [more]
A0A386PCM2_CLOSE3.680e-1471.43Serine acetyltransferase n=3 Tax=Clostridium TaxID... [more]
A0A7K0PBW7_9ACTN6.370e-1469.39Serine acetyltransferase n=3 Tax=root TaxID=1 RepI... [more]
A0A2H0LI65_9BACT6.850e-1467.35Serine acetyltransferase n=1 Tax=Candidatus Omnitr... [more]
A0A1J5RSB4_9ZZZZ6.930e-1471.43Serine O-acetyltransferase n=1 Tax=mine drainage m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80693contigEcto-sp13_S_contig80693:437..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score70.9
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog1485544.JQKP01000001_gene984
Preferred namecysE
Model size147
KEGG rclassRC00004,RC00041
KEGG koko:K00640
KEGG ReactionR00586
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111
KEGG ModuleM00021
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009001,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016407,GO:0016412,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019344,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
EggNOG free text desc.Bacterial transferase hexapeptide (six repeats)
EggNOG OGs1MVFX@1224,2VMGF@28216,44WCG@713636,COG1045@1,COG1045@2
EC2.3.1.30
Cds size147
COG Functional cat.E
Best tax levelNitrosomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464080.0867214-CDS-Ecto-sp13_S_contig80693:436..5831681464080.0867214-CDS-Ecto-sp13_S_contig80693:436..583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80693 437..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80693.19409.1prot_Ecto-sp13_S_contig80693.19409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80693 437..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80693.19409.1

>prot_Ecto-sp13_S_contig80693.19409.1 ID=prot_Ecto-sp13_S_contig80693.19409.1|Name=mRNA_Ecto-sp13_S_contig80693.19409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
GKRHPTIGDRVVLGAGAKVLGDITVEDDVLVGANSVVTKSVPKHHTAVG
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mRNA from alignment at Ecto-sp13_S_contig80693:437..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80693.19409.1 ID=mRNA_Ecto-sp13_S_contig80693.19409.1|Name=mRNA_Ecto-sp13_S_contig80693.19409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80693:437..583+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAAAGACATCCTACCATCGGAGACCGCGTTGTCCTCGGCGCTGGCGC
AAAGGTTTTGGGAGACATCACCGTCGAGGATGATGTGCTAGTGGGGGCGA
ACTCGGTCGTCACCAAGTCCGTGCCGAAGCACCACACCGCCGTAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80693:437..583+

>mRNA_Ecto-sp13_S_contig80693.19409.1 ID=mRNA_Ecto-sp13_S_contig80693.19409.1|Name=mRNA_Ecto-sp13_S_contig80693.19409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80693:437..583+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAAAGACATCCTACCATCGGAGACCGCGTTGTCCTCGGCGCTGGCGC
AAAGGTTTTGGGAGACATCACCGTCGAGGATGATGTGCTAGTGGGGGCGA
ACTCGGTCGTCACCAAGTCCGTGCCGAAGCACCACACCGCCGTAGGT
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