mRNA_Ecto-sp13_S_contig80669.19406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80669.19406.1
Unique NamemRNA_Ecto-sp13_S_contig80669.19406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80669.19406.1 vs. uniprot
Match: D8LDA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDA3_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.550e-27
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 RAQALWDEGCGRRPYDIVTGVQLPFPTGKAERPPGRLAHPSQQSLERGRNLQASLIAA 174
            RAQALWDEGCGRR Y+IVTGVQLP P+ KAERPPGRLAHPSQQSLERGRNLQASLIAA
Sbjct:  400 RAQALWDEGCGRRSYNIVTGVQLPLPSVKAERPPGRLAHPSQQSLERGRNLQASLIAA 457
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BLAST of mRNA_Ecto-sp13_S_contig80669.19406.1 vs. uniprot
Match: A0A835YYF5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.040e-7
Identity = 35/62 (56.45%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 RAQALWDEGCGRRPYDIVTGVQLPFPTGKAERPPGR----LAHPSQQSLERGRNLQASLIAA 174
            RAQAL D   G + YDIVT   LP   G A   P R    LAHPSQ SLERGRN Q +L+AA
Sbjct:  199 RAQALADAAHGGKTYDIVTNAALP--PGLAPSVPERVCRWLAHPSQASLERGRNRQGALVAA 258
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80669.19406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDA3_ECTSI2.550e-2791.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYF5_9STRA1.040e-756.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80669contigEcto-sp13_S_contig80669:344..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.867676-CDS-Ecto-sp13_S_contig80669:343..5201681464079.867676-CDS-Ecto-sp13_S_contig80669:343..520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80669 344..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80669.19406.1prot_Ecto-sp13_S_contig80669.19406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80669 344..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80669.19406.1

>prot_Ecto-sp13_S_contig80669.19406.1 ID=prot_Ecto-sp13_S_contig80669.19406.1|Name=mRNA_Ecto-sp13_S_contig80669.19406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
RAQALWDEGCGRRPYDIVTGVQLPFPTGKAERPPGRLAHPSQQSLERGRN
LQASLIAA*
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mRNA from alignment at Ecto-sp13_S_contig80669:344..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80669.19406.1 ID=mRNA_Ecto-sp13_S_contig80669.19406.1|Name=mRNA_Ecto-sp13_S_contig80669.19406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80669:344..520+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGCTCAGGCCCTGTGGGACGAAGGTTGCGGCAGGCGGCCCTACGACAT
CGTCACCGGCGTGCAGCTGCCGTTCCCTACGGGCAAGGCTGAGCGACCCC
CCGGCCGCCTTGCGCACCCGTCGCAGCAGTCGCTTGAGCGAGGTAGAAAC
CTGCAGGCGTCGCTGATTGCGGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80669:344..520+

>mRNA_Ecto-sp13_S_contig80669.19406.1 ID=mRNA_Ecto-sp13_S_contig80669.19406.1|Name=mRNA_Ecto-sp13_S_contig80669.19406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80669:344..520+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGCTCAGGCCCTGTGGGACGAAGGTTGCGGCAGGCGGCCCTACGACAT
CGTCACCGGCGTGCAGCTGCCGTTCCCTACGGGCAAGGCTGAGCGACCCC
CCGGCCGCCTTGCGCACCCGTCGCAGCAGTCGCTTGAGCGAGGTAGAAAC
CTGCAGGCGTCGCTGATTGCGGCATGA
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