mRNA_Ecto-sp13_S_contig80646.19405.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80646.19405.1
Unique NamemRNA_Ecto-sp13_S_contig80646.19405.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: D8LEN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEN8_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.400e-49
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:    1 MGEDKVKDITAGEAAEAPAAEPITTAGEGVDSSSDGQPSAAPPAPPTQGGSDSGRDASAPSSSEKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 309
            MGEDKVKDITAGE AEAPAAEP TTAG+GVDS SDGQPSAAPPAPPTQG SDS +DAS  SSSEKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK
Sbjct:    1 MGEDKVKDITAGEVAEAPAAEPSTTAGKGVDSGSDGQPSAAPPAPPTQGDSDSVKDASTSSSSEKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 103
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: A0A2D4BPK7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPK7_PYTIN)

HSP 1 Score: 61.6 bits (148), Expect = 6.230e-9
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  166 DASAPSSSEKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 309
            DA A    E NPF QYY  L HQQNMLQD VR + Y+RA+ ENRADF+
Sbjct:   56 DAGAEDEDEDNPFSQYYGMLLHQQNMLQDHVRTSTYERAMLENRADFE 103
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: A0A835YWV6_9STRA (Putative histonearginine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.070e-7
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  196 NPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 309
            NPF QYY Q+THQQNMLQD+VR   YQRAI  N ADF+
Sbjct:   16 NPFSQYYQQITHQQNMLQDAVRTGTYQRAIVGNSADFR 53
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: A0A8K1FFC5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFC5_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 2.050e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  190 EKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 309
            ++NPF QYY  L HQQNMLQD +R + Y+RA+ EN ADFK
Sbjct:   46 DENPFSQYYGMLLHQQNMLQDHIRTSTYERAMLENSADFK 85
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: F0X0H0_9STRA (Histonearginine methyltransferase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0H0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.080e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  190 EKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 309
            + NPF QYY  L HQQNMLQD VR + Y+RA++EN +DFK
Sbjct:    7 DNNPFSQYYGMLLHQQNMLQDYVRTSTYERAMTENCSDFK 46
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: A0A7R9U1C9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1C9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.180e-7
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  196 NPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 309
            NPF QYYAQLTHQQNMLQD+ R   YQ+A+  N ADF+
Sbjct:   17 NPFTQYYAQLTHQQNMLQDATRTGTYQQAMLRNPADFQ 54
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: A0A485LBG8_9STRA (Aste57867_18889 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBG8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.290e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  190 EKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADF 306
            E NPF QYY  L HQQNMLQD VR +AY+RA+ +N +DF
Sbjct:   12 EDNPFSQYYGMLLHQQNMLQDHVRTSAYERAMIQNASDF 50
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: A0A5D6XK85_9STRA (FYVE-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK85_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-6
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  190 EKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRA-DFK 309
            E+NPF QYY  L HQQNMLQD VR +AY+RA+ EN A DF+
Sbjct:  645 EENPFSQYYGMLLHQQNMLQDRVRTSAYERAVLENAAGDFR 685
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: A0A024GAJ3_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024GAJ3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.300e-6
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:  190 EKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADFK 309
            + NPF QYY  L HQQNMLQD VR + Y+RA+ EN  DFK
Sbjct:    7 DNNPFSQYYGMLLHQQNMLQDYVRTSTYERAMMENSNDFK 46
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BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Match: K3WWL9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWL9_GLOUD)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-6
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  196 NPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRADF 306
            NPF QYY  L HQQNMLQD VR + Y+RA+ EN ADF
Sbjct:   59 NPFSQYYGMLLHQQNMLQDHVRTSTYERAMLENAADF 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80646.19405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LEN8_ECTSI1.400e-4991.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2D4BPK7_PYTIN6.230e-962.50Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A835YWV6_9STRA1.070e-771.05Putative histonearginine methyltransferase n=1 Tax... [more]
A0A8K1FFC5_PYTOL2.050e-762.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0X0H0_9STRA5.080e-762.50Histonearginine methyltransferase putative n=1 Tax... [more]
A0A7R9U1C9_9STRA5.180e-768.42Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A485LBG8_9STRA9.290e-764.10Aste57867_18889 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6XK85_9STRA1.060e-665.85FYVE-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A024GAJ3_9STRA1.300e-662.50Uncharacterized protein n=3 Tax=Albugo candida Tax... [more]
K3WWL9_GLOUD1.330e-667.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80646contigEcto-sp13_S_contig80646:151..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score171.4
Seed ortholog evalue2.2e-40
Seed eggNOG ortholog2880.D8LEN8
Preferred nameCARM1
Model size309
KEGG rclassRC00003,RC02120,RC03388,RC03390
KEGG koko:K00924,ko:K05931,ko:K14844
KEGG ReactionR11216,R11217,R11219
KEGG Pathwayko01522,map01522
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0001067,GO:0001501,GO:0003006,GO:0003420,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007568,GO:0008013,GO:0008104,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008469,GO:0008757,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009966,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010228,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010646,GO:0010721,GO:0010830,GO:0010948,GO:0010975,GO:0010977,GO:0014070,GO:0014074,GO:0016043,GO:0016202,GO:0016273,GO:0016274,GO:0016277,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019919,GO:0022008,GO:0022402,GO:0022414,GO:0022603,GO:0023051,GO:0023052,GO:0030154,GO:0030330,GO:0030374,GO:0030518,GO:0030520,GO:0030522,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031345,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032091,GO:0032259,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033036,GO:0033143,GO:0033146,GO:0033365,GO:0033554,GO:0033993,GO:0034502,GO:0034613,GO:0034708,GO:0034969,GO:0034970,GO:0034971,GO:0034972,GO:0035097,GO:0035241,GO:0035242,GO:0035246,GO:0035247,GO:0035556,GO:0035642,GO:0036211,GO:0040008,GO:0042054,GO:0042127,GO:0042221,GO:0042393,GO:0042770,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043401,GO:0043412,GO:0043414,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044798,GO:0044819,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045600,GO:0045664,GO:0045665,GO:0045786,GO:0045787,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046620,GO:0046683,GO:0046686,GO:0046982,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048580,GO:0048583,GO:0048584,GO:0048608,GO:0048634,GO:0048638,GO:0048641,GO:0048699,GO:0048705,GO:0048731,GO:0048742,GO:0048831,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051093,GO:0051094,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051147,GO:0051153,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051591,GO:0051641,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060348,GO:0060349,GO:0060350,GO:0061035,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071156,GO:0071158,GO:0071168,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0090068,GO:0090575,GO:0097159,GO:0120035,GO:0140030,GO:0140033,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1901698,GO:1901700,GO:1901861,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902415,GO:1902494,GO:1902680,GO:1902806,GO:1902807,GO:1902882,GO:1902884,GO:1903010,GO:1903047,GO:1903506,GO:1903508,GO:1905214,GO:1990234,GO:2000026,GO:2000027,GO:2000045,GO:2000112,GO:2000134,GO:2000171,GO:2000241,GO:2001141
Exons1
EggNOG free text desc.protein-arginine omega-N asymmetric methyltransferase activity
EggNOG OGsCOG0500@1,KOG1500@2759
Ec32 ortholog descriptionRibosomal L11 methyltransferase, PrmA
Ec32 orthologEc-26_000570.1
EC2.1.1.319
Cds size309
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.8364289-CDS-Ecto-sp13_S_contig80646:150..4591681464079.8364289-CDS-Ecto-sp13_S_contig80646:150..459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80646 151..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80646.19405.1prot_Ecto-sp13_S_contig80646.19405.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80646 151..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80646.19405.1

>prot_Ecto-sp13_S_contig80646.19405.1 ID=prot_Ecto-sp13_S_contig80646.19405.1|Name=mRNA_Ecto-sp13_S_contig80646.19405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MGEDKVKDITAGEAAEAPAAEPITTAGEGVDSSSDGQPSAAPPAPPTQGG
SDSGRDASAPSSSEKNPFDQYYAQLTHQQNMLQDSVRVTAYQRAISENRA
DFK
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mRNA from alignment at Ecto-sp13_S_contig80646:151..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80646.19405.1 ID=mRNA_Ecto-sp13_S_contig80646.19405.1|Name=mRNA_Ecto-sp13_S_contig80646.19405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80646:151..459+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGAGGACAAAGTGAAAGACATCACCGCAGGGGAGGCGGCGGAAGC
ACCGGCGGCGGAGCCAATCACAACAGCAGGTGAAGGGGTCGACAGCAGTA
GCGACGGCCAGCCATCGGCGGCCCCGCCAGCACCGCCGACGCAAGGAGGC
TCGGATAGCGGGAGAGATGCGTCTGCGCCGTCGTCTTCCGAGAAGAACCC
GTTCGATCAGTATTACGCTCAGCTCACCCACCAGCAGAACATGCTTCAGG
ACAGCGTGAGGGTGACGGCTTACCAGAGAGCGATTTCGGAGAACCGCGCA
GATTTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80646:151..459+

>mRNA_Ecto-sp13_S_contig80646.19405.1 ID=mRNA_Ecto-sp13_S_contig80646.19405.1|Name=mRNA_Ecto-sp13_S_contig80646.19405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80646:151..459+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGAGGACAAAGTGAAAGACATCACCGCAGGGGAGGCGGCGGAAGC
ACCGGCGGCGGAGCCAATCACAACAGCAGGTGAAGGGGTCGACAGCAGTA
GCGACGGCCAGCCATCGGCGGCCCCGCCAGCACCGCCGACGCAAGGAGGC
TCGGATAGCGGGAGAGATGCGTCTGCGCCGTCGTCTTCCGAGAAGAACCC
GTTCGATCAGTATTACGCTCAGCTCACCCACCAGCAGAACATGCTTCAGG
ACAGCGTGAGGGTGACGGCTTACCAGAGAGCGATTTCGGAGAACCGCGCA
GATTTCAAG
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