mRNA_Ecto-sp13_S_contig806.19397.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig806.19397.1
Unique NamemRNA_Ecto-sp13_S_contig806.19397.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: D8LRQ0_ECTSI (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 7.710e-120
Identity = 182/186 (97.85%), Postives = 182/186 (97.85%), Query Frame = 1 
Query:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 558
            MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVL    GSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA
Sbjct:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLS---GSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: A0A835Z4U9_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA)

HSP 1 Score: 307 bits (787), Expect = 6.090e-102
Identity = 154/185 (83.24%), Postives = 170/185 (91.89%), Query Frame = 1 
Query:    4 VDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 558
            +D VDKQV ELKKLW NKRQLAFQGLNLAMIVLSALMIWKSLMVVT+SESPVVVVL    GSMEPAFQRGDILFL+N D+P+R GEVVVFKIKDR+IPIVHR+M VHEKPDG++ VLTKGD+N+V+DRGLY PGQ+WL REDILGRARG LRYVGMVTI+LNDYP LKYVLVG+MGLFVLTN+EA
Sbjct:    1 MDIVDKQVVELKKLWKNKRQLAFQGLNLAMIVLSALMIWKSLMVVTRSESPVVVVLS---GSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRIMKVHEKPDGTVEVLTKGDNNRVDDRGLYAPGQLWLQREDILGRARGALRYVGMVTIVLNDYPALKYVLVGIMGLFVLTNKEA 182
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: A0A6V1QND9_HETAK (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK)

HSP 1 Score: 291 bits (744), Expect = 2.080e-95
Identity = 147/186 (79.03%), Postives = 166/186 (89.25%), Query Frame = 1 
Query:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 558
            M++ +++Q+DELKKLW NKR LAFQ LNLAMIV SALMIWKSLMV T+SESPVVVVL    GSMEPAFQRGDILFL N  +P+RAGEVVVFKIKDREIPIVHRVM VHEK DG++  LTKGD+N+V+DRGLY PGQ+WL REDILGRARGTLRYVGMVTIILNDYP LKYVLVG+MGLFVLT++E+
Sbjct:    1 MMELIEQQLDELKKLWKNKRALAFQALNLAMIVFSALMIWKSLMVWTQSESPVVVVLS---GSMEPAFQRGDILFLTNHQDPIRAGEVVVFKIKDREIPIVHRVMKVHEKGDGAVEALTKGDNNRVDDRGLYAPGQLWLGREDILGRARGTLRYVGMVTIILNDYPVLKYVLVGIMGLFVLTSKES 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: A0A7S0SWE0_9STRA (Signal peptidase I n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE0_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.630e-94
Identity = 145/185 (78.38%), Postives = 162/185 (87.57%), Query Frame = 1 
Query:    4 VDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 558
            ++ V  Q  ELKKLW NKRQL+FQGLNLAMIV SALMIWK LM +TKSESPVVVVL    GSMEPAFQRGDILFL+N D+P+R GE+VVFKIKDR+IPIVHRVM VHEK DG I VLTKGD+N+V+DRGLY PGQ WL REDILGRARGTLRY+GMVTIILNDYP LKYVL+G+MGLFVLTN+E+
Sbjct:    1 MNIVKNQAFELKKLWKNKRQLSFQGLNLAMIVFSALMIWKGLMFITKSESPVVVVLS---GSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVMKVHEKADGKIEVLTKGDNNRVDDRGLYAPGQQWLQREDILGRARGTLRYLGMVTIILNDYPILKYVLIGVMGLFVLTNKES 182
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: A0A7S3M735_9STRA (Signal peptidase I n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M735_9STRA)

HSP 1 Score: 287 bits (735), Expect = 4.650e-94
Identity = 144/185 (77.84%), Postives = 163/185 (88.11%), Query Frame = 1 
Query:    4 VDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 558
            ++ V  QV E+KKLW NKRQL  Q LNLAMIV SALMIWK LMVVTKSESPVVVVL    GSMEPAFQRGDILFL N D+P+RAGE+VVFKIKDR+IPIVHRVM VHEK DGS+ VLTKGD+N+V+DRGLY PGQ+WL REDILGRA+GTLRY+GMVTIILNDYP LKYVL+G+MG+FVLTN+E+
Sbjct:    1 METVKNQVVEIKKLWKNKRQLTLQALNLAMIVFSALMIWKGLMVVTKSESPVVVVLS---GSMEPAFQRGDILFLTNQDDPIRAGEIVVFKIKDRDIPIVHRVMKVHEKEDGSVEVLTKGDNNRVDDRGLYAPGQLWLQREDILGRAKGTLRYLGMVTIILNDYPVLKYVLIGIMGIFVLTNKES 182
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: A0A7S1U989_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.940e-93
Identity = 145/186 (77.96%), Postives = 162/186 (87.10%), Query Frame = 1 
Query:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 558
            M + V  QV ELKKLW NKRQL FQ LNLAMIV SALMIWKSLMV+TKSESPVVVVL    GSMEPAFQRGDILFL N D P+R GE+VVFKIKDR+IPIVHRV  VHEKPDG + +LTKGD+N+V+DRGLY PGQ+WL+REDILGRA GTLRYVGMVTIILND+P LKY+LVG+MGLFVLTN+E+
Sbjct:    1 MWEIVQMQVFELKKLWANKRQLLFQSLNLAMIVFSALMIWKSLMVLTKSESPVVVVLS---GSMEPAFQRGDILFLSNHDSPIRVGEIVVFKIKDRDIPIVHRVTKVHEKPDGKVELLTKGDNNRVDDRGLYAPGQLWLNREDILGRAVGTLRYVGMVTIILNDFPALKYLLVGIMGLFVLTNKES 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: A0A7S2RVP6_9STRA (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA)

HSP 1 Score: 277 bits (709), Expect = 3.890e-90
Identity = 139/184 (75.54%), Postives = 158/184 (85.87%), Query Frame = 1 
Query:    4 VDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNRE 555
            ++ +D Q+ ELKKLW NKRQ  FQ LNLAMIV SALMIWK LM +TKSESPVVVVL    GSMEPAFQRGDILFL+N D+P+R GEVVVFKIKDR+IPIVHRV+ VHEKPDG + +LTKGD+N+V+DRGLY  GQ ++ REDILGRA GTLRYVGMVTIILNDYP LKYVLV +MGLFVLTN+E
Sbjct:    1 MEMIDAQISELKKLWRNKRQFLFQALNLAMIVFSALMIWKGLMFITKSESPVVVVLS---GSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRVLKVHEKPDGRVELLTKGDNNRVDDRGLYALGQQFIGREDILGRAVGTLRYVGMVTIILNDYPALKYVLVAVMGLFVLTNKE 181
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: F0YAE9_AURAN (Signal peptidase I n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YAE9_AURAN)

HSP 1 Score: 275 bits (703), Expect = 4.910e-89
Identity = 143/195 (73.33%), Postives = 161/195 (82.56%), Query Frame = 1 
Query:    4 VDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRAR-----------GTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNRE 555
            ++ VD+Q+ ELKKLW NKR L  QGLNLAMIV SALMIWK LM VTKSESPVVVVL    GSMEPAFQRGDILFL+N D P+R GEVVVFKIKDR+IPIVHRVM VHEK DG++ +LTKGD+N+V+DRGLY PGQ+WL+RED+LGRA            GTLRYVGMVTIILNDYP LKYVLV +MGLFVLTN+E
Sbjct:    1 MEIVDQQIFELKKLWKNKRLLLHQGLNLAMIVFSALMIWKGLMFVTKSESPVVVVLS---GSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHRVMKVHEKADGAVELLTKGDNNRVDDRGLYAPGQLWLAREDVLGRAIRGGNKMIQGAIGTLRYVGMVTIILNDYPALKYVLVSIMGLFVLTNKE 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: W7TFR1_9STRA (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFR1_9STRA)

HSP 1 Score: 274 bits (700), Expect = 9.600e-89
Identity = 137/186 (73.66%), Postives = 158/186 (84.95%), Query Frame = 1 
Query:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA 558
            M + V  Q+ ELKKLW + R L  Q LNLAMIV SALMIWK LM +TKSESPVVVVL    GSMEPAFQRGDILFL+N D+P+R GE+VVFKIKDR+IPIVHRV+ VH+K DG + +LTKGD+N+V DRGLY PGQ+WL+REDILGRA GTLRY+GMVTIILNDYP LKYVLVG+MGLFVLTN+E+
Sbjct:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLS---GSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGTLRYLGMVTIILNDYPMLKYVLVGIMGLFVLTNKES 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Match: A0A6U5HKR9_9STRA (Signal peptidase I n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5HKR9_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.100e-87
Identity = 137/185 (74.05%), Postives = 155/185 (83.78%), Query Frame = 1 
Query:    1 MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSESPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARGTLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNRE 555
            M D +DKQ+ ELKKLW NKRQLAFQ LNLAMIV SALMIWK LM VTKSESPVVVVL    GSMEPAFQRGDILFL N +  +  G+VVVFKI+DR+IPIVHR++  H K DG + +LTKGD+N+V+DRGLY PGQ+WL REDILGRA G LRYVGMVTI LNDYP LKYVLVG+MGLFVLT++E
Sbjct:    1 MKDIIDKQIVELKKLWLNKRQLAFQALNLAMIVFSALMIWKGLMCVTKSESPVVVVLS---GSMEPAFQRGDILFLDNSNPEVAVGDVVVFKIRDRDIPIVHRILKAHRKADGKVELLTKGDNNRVDDRGLYAPGQLWLEREDILGRAVGCLRYVGMVTIALNDYPVLKYVLVGMMGLFVLTSKE 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig806.19397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ0_ECTSI7.710e-12097.85Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A835Z4U9_9STRA6.090e-10283.24Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A6V1QND9_HETAK2.080e-9579.03Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S0SWE0_9STRA1.630e-9478.38Signal peptidase I n=1 Tax=Chromulina nebulosa Tax... [more]
A0A7S3M735_9STRA4.650e-9477.84Signal peptidase I n=1 Tax=Spumella elongata TaxID... [more]
A0A7S1U989_9STRA1.940e-9377.96Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S2RVP6_9STRA3.890e-9075.54Signal peptidase complex catalytic subunit SEC11C ... [more]
F0YAE9_AURAN4.910e-8973.33Signal peptidase I n=3 Tax=Pelagomonadales TaxID=5... [more]
W7TFR1_9STRA9.600e-8973.66Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A6U5HKR9_9STRA1.100e-8774.05Signal peptidase I n=1 Tax=Corethron hystrix TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig806contigEcto-sp13_S_contig806:14528..18899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score353.6
Seed ortholog evalue5.7e-95
Seed eggNOG ortholog2880.D8LRQ0
Preferred nameSEC11C
Model size1103
KEGG koko:K10686,ko:K13280
KEGG Pathwayko03060,ko04120,map03060,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
Exons5
EggNOG free text desc.signal peptide processing
EggNOG OGsCOG0681@1,KOG3342@2759
Ec32 ortholog descriptionSec11 homolog, catalytic subunit of the Signal Peptidase Complex
Ec32 orthologEc-12_000620.1
EC3.4.21.89,6.2.1.45
Cds size561
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig806.19397.1prot_Ecto-sp13_S_contig806.19397.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig806 14528..18357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.2196338-CDS-Ecto-sp13_S_contig806:14527..147091681464079.2196338-CDS-Ecto-sp13_S_contig806:14527..14709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig806 14528..14709 +
1681464079.233842-CDS-Ecto-sp13_S_contig806:16452..165991681464079.233842-CDS-Ecto-sp13_S_contig806:16452..16599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig806 16453..16599 +
1681464079.243678-CDS-Ecto-sp13_S_contig806:16941..169871681464079.243678-CDS-Ecto-sp13_S_contig806:16941..16987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig806 16942..16987 +
1681464079.2636082-CDS-Ecto-sp13_S_contig806:17519..176501681464079.2636082-CDS-Ecto-sp13_S_contig806:17519..17650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig806 17520..17650 +
1681464079.277236-CDS-Ecto-sp13_S_contig806:18302..183571681464079.277236-CDS-Ecto-sp13_S_contig806:18302..18357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig806 18303..18357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.286191-UTR-Ecto-sp13_S_contig806:18357..188991681464079.286191-UTR-Ecto-sp13_S_contig806:18357..18899Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig806 18358..18899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig806.19397.1

>prot_Ecto-sp13_S_contig806.19397.1 ID=prot_Ecto-sp13_S_contig806.19397.1|Name=mRNA_Ecto-sp13_S_contig806.19397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
MVDFVDKQVDELKKLWHNKRQLAFQGLNLAMIVLSALMIWKSLMVVTKSE
SPVVVVLRQVVGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPI
VHRVMNVHEKPDGSISVLTKGDSNKVNDRGLYVPGQMWLSREDILGRARG
TLRYVGMVTIILNDYPPLKYVLVGLMGLFVLTNREA*
back to top

mRNA from alignment at Ecto-sp13_S_contig806:14528..18899+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig806.19397.1 ID=mRNA_Ecto-sp13_S_contig806.19397.1|Name=mRNA_Ecto-sp13_S_contig806.19397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig806:14528..18899+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACTTCGTGGATAAGCAGGTGGATGAGCTGAAGAAGCTATGGCA
CAACAAGCGTCAGCTCGCTTTCCAGGGGCTGAACCTGGCCATGATCGTGC
TCTCCGCTCTCATGATCTGGAAGTCGCTCATGGTGGTCACCAAGTCGGAG
AGTCCGGTCGTCGTTGTGCTCAGGCAAGTCGTGTATTGCGTGGCGGATCT
TGTCCGAATTTGAGTGCAATTGGAGTTGCGTTTCAAGACTTGGAAGGCAC
AAGATGCTGCACATGGCATGGTAGCCGGTGTGAGGCAACCCTGCGTGCGA
TGCCGGCCGCTCGGTGTCTTACCCGTGCTATGCATATGAAGTAGCACACT
GGTACAGTGGCTGACTAGTAGCACACAGAGAAAGTGCACAGCAGTAGCGG
CGAACTAGCAGCACAGAGGAGGTCATGTGTCGTTTAGACACAGCAGTCGT
TGGTGCCAAGATCATCCTGGTGACTACATACGAACGAACAAGGGCTAGCG
AGGGGCGTCAAACCCTAGAAAACATCAGTACTACGTTGTACGAAGTACTA
TAATAGATCACAGGCACGCGGCCATGGGACCGGCACTCCGAGCCCATGTC
TTTGTCTTTTATCCGCAGCGCCAACCTTGGTACCTTCGAGGCAAGTAGTC
TGCGGACATATATCTTCTCCAAAATACTATTTTGATGCTCCTGCCTGTGC
AGCCGCGAACGAAACGGTTTATTTCTGGGACGATCCAAGGCGCACTTGGC
AGATATCCCACTCCAAGGGTTGGTCGTGTGGGCTCAAGATTCTTGTGCGT
TTTGTTTACCGGTTTGTTGAGAGCGTTTAGAGACACAACGATCGGTTGGC
CGCGGGTATATAACGCATCGACGGGAATTTGGGGCTGGACGTAAGATGAG
CTTCGTGCTGTTCGCATCGAACGCCGGGCGGGGCAGCGCAGAAAGTCGCA
GTTAGAGGACACCACCGCAATTGAGGACATCAGGACGGAGACGGCAGAAT
GGGTACCGAGAATGCGTATGTGCCGGACCGATGATTGTAGAGGCGGCAGA
AATACTAGCGAGATCATACGTGTCCCAATACCTCTTATGGCTGACCCCCC
CCCCCCCCCCCCCGCCATTACCCCCTATGTAATGATGTTTTTTAGATTAT
GTGTTTGCTTCTGTTTATGTTGTTCAGGAGTGATGCTGGAGTCACCCGCA
CCTGTTGGGCGTACGTGTGGGTAATGCCTCTGCCCGTTTAACCCCGGCTG
CGAATATTCCTCGGCCTAACAGGGGTACAAACATAGGACCAGGCAACTCT
TAGTATTGGTCCATCTTGATTGTGAGCTTTGATTCTTTCCTCCATCGCGT
GCCCGGCACTTGTTGTTTTGTTTATTTTTGCATCGCGTACCCAGCAGGAG
CGATGAGATCTCTTTCACTTTGTTTTGATGGGGCATTCCTGTTCTATTTT
TCTTCTCTTTTTCCGGTTTCGATCGTCTCCCAGTTAGCTCTGGTGATCTG
CTTTCATACTAGAGGATTTCTGGGCCTAATGTATTCCTGTTCTCTGATTT
CTACAAGGGTGTACAATTTTGGGTAGTTGGCCTGTAACCTCCGAAGGCAT
CCGCGTCAGTCGGACCGGTACGGATGCTAGAAGGTACTGAGCAGAAACCG
GAACTGCTTAACCAGTTAAAACAACAACAACGAGGCGCAACAGCAGTCGT
GCGGTACGCATCTGGAATAGAAGTGGGTAGTTAGGATATAGAAGTGGGGA
CCGTTTTACTGTTTCGCCGTCTTGACATCGCCGTCCTCTTCTTACGAGAT
GGTACCTTTTCAATGCTAATTTGCATGATATGTTTGCGCAAAACAAGTTC
TTGATGAGCGCTCGGTCTGCACCCCGGCGCCCGCCCTCGCCTTTCGTTTT
TTATCTCAATCGATCGATCCCGTAGCGGGTCTATGGAGCCAGCGTTTCAG
CGTGGAGATATTCTCTTCCTCCACAATGGGGATGAACCTCTTCGGGCGGG
CGAGGTGGTTGTCTTCAAGATTAAGGACAGGGAGATTCCGATCGTTCACA
GGGTGATGAACGTTCACGAAAAGTGAGTTTCGGGAGCTATACATGCATGC
GTTTTTTGTTGACAGCACATGAGTGGAAGAGTTGCTTGTTCCCCCCTCTA
GCTTCGTCGCTATTATTGTATACATTCATCGTGCTGGCTGTTGGTTTTGA
TCGCGCTGTAGTGGTTTGTTCCCCGCGAGTGGATACATTACTGCTGTCGT
GTTACTATTTTATTATACTCGCACCATGGGTAACCAAGTCCCCTTGAACG
TTTGGTCGTGGCTGACTTTCTCGTTGCACGACCGCGTTTTCTGTCCCCTC
CCCCGCCTGTGTGCGTGTGCGTGCCGCTGTGTTGTTACCGGTGTGTTTGC
CGTCGGCCTGGTAGGCCTGACGGGTCGATATCAGTGCTTACGAAGGGAGA
CAGCAACAAGGTGCGTATCTCTCCGCTGCCGTTGACTCGAAGGTTGCTTG
GCGAGAGGTTGGAGGCATTGCGACCAGTCACAAACCAAGGCATCGCACAG
CGGGTCATCTGCTCCGATATGGGATCAGTGTTCCTACTGGGGGGCGCACT
CATTGCCGTGCATGCCGCAGTCGTAAGAGCATTGACCTCGCATCCCTAAA
ATACAAAGCCGGGATGGTGCACGCCGGGTCTGGGGGGGAAGGATTGGGGG
TCCATGGTACTTTTGCGGCTGTGGTTGTGGTCTCTTCTCTTCTGAATTGA
AGTTCATCCTTGTGGTCGCCCCGCTGCGTTGTGGCACTTGCTTGGCCTCC
CGCGTACCTTTCCTCCACCCGCTTTGCCTCTTTTTGCGATCACGGCTAGG
GTCGCATACCGCCCATGGTGCAGCACCGGGCGGCGTGTTCACTCGTGCTG
TCGAATGCATGGTATGTAGTGATACTGCTGTGGTAGCACCACTTAAGCCG
AGGCACCATTTCTCTTACCCGTGTTGCTGCCTACTGGTACAGGTGAACGA
CCGGGGATTGTATGTGCCGGGGCAGATGTGGCTCAGTCGGGAAGACATTC
TGGGGAGGGCGCGGGGCACGCTTCGTTACGTGGGGATGGTGACCATCATC
CTCAACGACTATCCACCGCTAAAGTGAGAAGCGCGTACGAGCCGTGCTTT
GGTGCATGTCAATCGCCAACACGAGCGTTTTTTGGTTCGGTTGTGGCGCG
TTTGGGACATTTTTGCCGCTCTCTCCGAGGTGCTTGTTTCGTTCTTGTTT
GTCGCAAACAGCAAAGGCGCACGACGCCAGGATCAGTGATTGGGTGGCAG
TAGCAGCAGAGCTCGCTTTGCAGGTCGGCTCTTAGTCCTGTTGTCTCTAC
GATATGAAATCTCGTAGGCACATCGCCTCGTGGTAAGAAGTTTGTGAGCT
GCTACAACAGCAAGGCAATGATAGCGTGATGGCCATGCAGCAATAGCAGC
TGTACACAGAATCACCATCACATTGCCAAAATGAAGAGCATTAGCCGAGG
TGTAAAAAGAATGTATCATCTAACCCGACACGGACCATCCAAGCCCGCTC
AATGATGTTCCAATTTTGTGCTATATACGCCTTGTTTGCTGCTCGCACTG
CTTGCGCGCTGACGCTCTCACCCACCTCTCCCTCGCACACTCCTGTCGCA
TGTGTGCCCTTTTACTTAAGTTTCCTTCCTTCGTCCACCTGGACTACTGT
TTGCGAAAAACGATCGGAAACCCCATGTGAATCATACTTTAATTCAACAT
TTAATACTCGCGATGTTCCCCTCAGGTATGTGCTGGTCGGGCTAATGGGG
CTTTTCGTGCTGACCAATCGAGAAGCATGATGACGGGCACGCGCGTTGCC
TGTCTGTCCCATAGCCGACACGCGGAGAGAGGAGAGGGGCGGAGAGAAAG
AGAGAGTGGGGGTTTGGGAGAGAGACACGGGGCACCGGAATGATTGTGGC
GAGCTTTTTCAAGGACATGCGCGTTGAACGTCTTGTTTAAGTCGGGGTTG
AATTTCTACTCGAGATGCTGACAAGGGGACCAGTCGTGCTGACACAACGC
AGTTTGCATGACGCTTGTGAGACACTGGTCCTGGGTGGGGCTGGTCAACC
CAAGGGTTGGCCATTCATTTGAATAGCTGCAATTCCTGGGCGTTGATGGG
AACGAGTGTTGAGAGAGCAGAAACGGCTGGATGAGGTGTCCATGCGCCGG
GAGAGTAAAGCTATGTGTCACATCTCTCAAGATCTCTCAAGATCTTTGTC
TGTAAGTCGACAACACCACATTGTTTCTCGGCGCTTGGCCATTCGACAGC
AGTCTCGACAAGGGTCTCGCGACAAGATTTATCCCCGAGGAAACAATGTG
GAGAAACGTAAAAAGTTCTGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig806:14528..18899+

>mRNA_Ecto-sp13_S_contig806.19397.1 ID=mRNA_Ecto-sp13_S_contig806.19397.1|Name=mRNA_Ecto-sp13_S_contig806.19397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig806:14528..18899+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACTTCGTGGATAAGCAGGTGGATGAGCTGAAGAAGCTATGGCA
CAACAAGCGTCAGCTCGCTTTCCAGGGGCTGAACCTGGCCATGATCGTGC
TCTCCGCTCTCATGATCTGGAAGTCGCTCATGGTGGTCACCAAGTCGGAG
AGTCCGGTCGTCGTTGTGCTCAGGCAAGTCGTCGGGTCTATGGAGCCAGC
GTTTCAGCGTGGAGATATTCTCTTCCTCCACAATGGGGATGAACCTCTTC
GGGCGGGCGAGGTGGTTGTCTTCAAGATTAAGGACAGGGAGATTCCGATC
GTTCACAGGGTGATGAACGTTCACGAAAAGCCTGACGGGTCGATATCAGT
GCTTACGAAGGGAGACAGCAACAAGGTGAACGACCGGGGATTGTATGTGC
CGGGGCAGATGTGGCTCAGTCGGGAAGACATTCTGGGGAGGGCGCGGGGC
ACGCTTCGTTACGTGGGGATGGTGACCATCATCCTCAACGACTATCCACC
GCTAAAGTATGTGCTGGTCGGGCTAATGGGGCTTTTCGTGCTGACCAATC
GAGAAGCATGA
back to top