mRNA_Ecto-sp13_S_contig8055.19391.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8055.19391.1
Unique NamemRNA_Ecto-sp13_S_contig8055.19391.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8055.19391.1 vs. uniprot
Match: A0A6H5KSB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSB6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.330e-34
Identity = 75/119 (63.03%), Postives = 81/119 (68.07%), Query Frame = -2 
Query:  591 FGGGEEFIDLVDDDKNVRPRYVLGTTFIAAVVKKPWGHRSRWGYHIVALSNNVTIIERLFKTPV*QRLISPLALPPARAPLPTAPAQQETEVFPQAPDERQKTK----GPFPTPFPRRL 935
            FG GEEFID  + DKN    Y+L TTFIAAV KK W H++RWGYHIVALSNNVTIIERL +TP  QRLISPLALPPARAPLPTAPA       P     R+K K     P P P P  L
Sbjct:   86 FGDGEEFIDRGNCDKNFHASYILDTTFIAAVEKKSWVHQNRWGYHIVALSNNVTIIERLSETPTLQRLISPLALPPARAPLPTAPAPTRDGSLPSG--ARRKAKIVHSAPHPVPSPTLL 202
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BLAST of mRNA_Ecto-sp13_S_contig8055.19391.1 vs. uniprot
Match: A0A6H5L7M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.950e-18
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = -1 
Query:  508 DLASRPTAGAGASPNRPGPTRNGSLPSGSRRKAENERSVPNPVPAPTLLEKSPKTKKPTATTPTTNRTPTFPPET 732
            DLASRPTAGAGAS N PG      +PSG+RRK +  RS P+ VPAPTLLEK+PK +KPT TTPTTNRTP FPP T
Sbjct:  197 DLASRPTAGAGASSNCPGTNEKRKVPSGARRKRKTARSDPHSVPAPTLLEKNPKKRKPTTTTPTTNRTPAFPPAT 271
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BLAST of mRNA_Ecto-sp13_S_contig8055.19391.1 vs. uniprot
Match: A0A6H5K3I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.320e-15
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = -2 
Query:  747 KNVRPRYVLGTTFIAAVVKKPWGHRSRWGYHIVALSNNVTIIERLFKTP 893
            KNVR  Y+LGTTFIAAV KK WGH++ WGYHIVALSN+VTIIERL KTP
Sbjct:  114 KNVRASYILGTTFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERLSKTP 162
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BLAST of mRNA_Ecto-sp13_S_contig8055.19391.1 vs. uniprot
Match: A0A6H5JWD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.880e-15
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = -2 
Query:  747 KNVRPRYVLGTTFIAAVVKKPWGHRSRWGYHIVALSNNVTIIERLFKTP 893
            KNVR  Y+LG TFIAAV KK WGH++ WGYHIVALSN+VTIIERL KTP
Sbjct:    3 KNVRASYILGITFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERLSKTP 51
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BLAST of mRNA_Ecto-sp13_S_contig8055.19391.1 vs. uniprot
Match: A0A6H5K6D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.840e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = -2 
Query:  747 KNVRPRYVLGTTFIAAVVKKPWGHRSRWGYHIVALSNNVTIIERLFKTP 893
            KNVR  Y+LGTTFIAAV KK WGH++ WGYH+VALS++VTIIERL KTP
Sbjct:    3 KNVRASYILGTTFIAAVEKKKWGHQNCWGYHVVALSDDVTIIERLSKTP 51
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BLAST of mRNA_Ecto-sp13_S_contig8055.19391.1 vs. uniprot
Match: A0A6H5JX79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX79_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.550e-14
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = -2 
Query:  747 KNVRPRYVLGTTFIAAVVKKPWGHRSRWGYHIVALSNNVTIIERLFKTP 893
            KN R  Y++GTT IAAV KK WGH++ WGYHIVALSN VTIIERL KTP
Sbjct:   55 KNARASYIVGTTSIAAVEKKKWGHQNCWGYHIVALSNGVTIIERLSKTP 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8055.19391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KSB6_9PHAE3.330e-3463.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7M6_9PHAE8.950e-1869.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3I6_9PHAE4.320e-1579.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWD9_9PHAE4.880e-1577.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6D8_9PHAE6.840e-1575.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX79_9PHAE4.550e-1473.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8055contigEcto-sp13_S_contig8055:6026..6979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size954
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464078.66559-UTR-Ecto-sp13_S_contig8055:6025..61961681464078.66559-UTR-Ecto-sp13_S_contig8055:6025..6196Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8055 6026..6196 +
1681464078.6997344-UTR-Ecto-sp13_S_contig8055:6679..69791681464078.6997344-UTR-Ecto-sp13_S_contig8055:6679..6979Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8055 6680..6979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464078.6784117-CDS-Ecto-sp13_S_contig8055:6196..66791681464078.6784117-CDS-Ecto-sp13_S_contig8055:6196..6679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8055 6197..6679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8055.19391.1prot_Ecto-sp13_S_contig8055.19391.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8055 6197..6679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8055.19391.1

>prot_Ecto-sp13_S_contig8055.19391.1 ID=prot_Ecto-sp13_S_contig8055.19391.1|Name=mRNA_Ecto-sp13_S_contig8055.19391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MGIRTKDSRWTQSKYSRNDSRSTREQQRSNEQIIHGGGRPKQKLLMMQSG
GRIQGEKNEGRKEGRQKNAETILCCLRHRRRRHRSRCRRRCCRCRGSRHR
SCRCLGRCLRRHRLRGKRRGPVRRWSCRRRFLRLRTLLQKSRRGNGVGNG
PFVFCLSSGA*
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mRNA from alignment at Ecto-sp13_S_contig8055:6026..6979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8055.19391.1 ID=mRNA_Ecto-sp13_S_contig8055.19391.1|Name=mRNA_Ecto-sp13_S_contig8055.19391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8055:6026..6979+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGATAAACAGAGTCGACGATACCGTGGATCGACAACCTCGAATGGGGG
CGAAAGATTAAATGGTCTTGAGAGTAAACGATGAACAACTTCAATCATCA
AACGATTGTTTCAGTCAACGATTCGTAAGCAACAACGGTGCGTGGTGCAA
AGGACGCCCAACGCGTTTGGGATGGGAATTCGAACGAAAGACTCAAGGTG
GACACAATCAAAGTACTCAAGAAACGACAGCCGAAGCACGCGAGAGCAAC
AGCGATCGAACGAGCAAATAATACACGGGGGGGGAAGACCGAAGCAGAAA
CTACTCATGATGCAGAGTGGTGGCCGAATTCAGGGGGAAAAAAACGAAGG
AAGGAAGGAAGGCAGGCAAAAAAACGCAGAAACTATTCTGTGTTGTCTCC
GTCACCGGAGGCGTCGTCATCGGAGTCGGTGTCGTCGTCGTTGTTGCCGT
TGTCGCGGTAGTCGGCATCGTTCGTGTCGTTGTCTTGGTCGTTGTCTTCG
CCGTCATCGTCTCCGGGGGAAACGTCGGGGTCCTGTTCGTCGTTGGAGTT
GTCGCCGTCGGTTTCTTCGTCTTCGGACTCTTCTCCAGAAGAGTCGGCGC
GGGAACGGGGTTGGGAACGGACCTTTCGTTTTCTGCCTTTCGTCGGGAGC
CTGAGGGAAGACTTCCGTTTCTTGTTGGGCCGGGGCGGTTGGGAGAGGCG
CCCGCGCCGGCGGTAGGGCGAGAGGCGAGATCAATCGTTGCTAGACGGGT
GTCTTGAATAGGCGTTCGATGATGGTGACGTTATTGGAGAGGGCGACGAT
GTGGTAGCCCCAACGGCTACGGTGCCCCCACGGCTTCTTTACGACAGCGG
CGATGAAGGTCGTGCCGAGGACGTACCTGGGGCGGACGTTCTTGTCATCG
TCGACGAGGTCGATGAATTCCTCACCGCCACCGAAAAGCACCTCTTGAAG
AGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8055:6026..6979+

>mRNA_Ecto-sp13_S_contig8055.19391.1 ID=mRNA_Ecto-sp13_S_contig8055.19391.1|Name=mRNA_Ecto-sp13_S_contig8055.19391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8055:6026..6979+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAATTCGAACGAAAGACTCAAGGTGGACACAATCAAAGTACTCAAG
AAACGACAGCCGAAGCACGCGAGAGCAACAGCGATCGAACGAGCAAATAA
TACACGGGGGGGGAAGACCGAAGCAGAAACTACTCATGATGCAGAGTGGT
GGCCGAATTCAGGGGGAAAAAAACGAAGGAAGGAAGGAAGGCAGGCAAAA
AAACGCAGAAACTATTCTGTGTTGTCTCCGTCACCGGAGGCGTCGTCATC
GGAGTCGGTGTCGTCGTCGTTGTTGCCGTTGTCGCGGTAGTCGGCATCGT
TCGTGTCGTTGTCTTGGTCGTTGTCTTCGCCGTCATCGTCTCCGGGGGAA
ACGTCGGGGTCCTGTTCGTCGTTGGAGTTGTCGCCGTCGGTTTCTTCGTC
TTCGGACTCTTCTCCAGAAGAGTCGGCGCGGGAACGGGGTTGGGAACGGA
CCTTTCGTTTTCTGCCTTTCGTCGGGAGCCTGA
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