mRNA_Ecto-sp13_S_contig8055.19390.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8055.19390.1
Unique Name	mRNA_Ecto-sp13_S_contig8055.19390.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: A0A6H5KRX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRX0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 5.260e-15
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 1

Query:    4 PSKLRRVGKKDMTLHFVCPVDMTK-------VAVVTAKVALNVTTGLSVDIWDFLKD 153
            PS LR + KKDMTLHF+CPVDMTK       VAVVTAKVAL  TTGL VDI DFLKD
Sbjct:  164 PSNLRGLAKKDMTLHFLCPVDMTKRCRAAMVVAVVTAKVALKATTGLKVDISDFLKD 220

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.780e-14
Identity = 43/76 (56.58%), Postives = 46/76 (60.53%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            SKLRR+GKKDMTLHF+CPVDMTKV                           AVVTAKVALN TTGL VDI +FLKD
Sbjct:  118 SKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKD 193

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-13
Identity = 43/76 (56.58%), Postives = 46/76 (60.53%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            SKLRR+GKKDMTLHF+CPVDMTKV                           AVVTAKVALN TTGL VDI +FLKD
Sbjct:  786 SKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKD 861

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: A0A6H5KSY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.600e-13
Identity = 42/77 (54.55%), Postives = 45/77 (58.44%), Query Frame = 1

Query:    4 PSKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            P+K R VGKKDM LHF+CPVDMTKV                           AVVTAKVALN TTGL+VDI DFLKD
Sbjct:  341 PNKFRGVGKKDMALHFLCPVDMTKVPCGYGGEGYRFQETRDWVKKISPVLQVAVVTAKVALNATTGLNVDISDFLKD 417

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-12
Identity = 42/76 (55.26%), Postives = 45/76 (59.21%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            SKLR +GKKDMTLHF+CPVDMTKV                           AVVTAKVALN TTGL VDI +FLKD
Sbjct:  562 SKLRLLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKD 637

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.010e-12
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            SKLRR+GKKDMTLHF+CPVDMTKV                           AVVTA+VALN TTGL V+I +FL+D
Sbjct:  618 SKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTARVALNATTGLDVNISNFLQD 693

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 7.320e-11
Identity = 39/76 (51.32%), Postives = 44/76 (57.89%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            +KLR + KKDMTLHF+CPVDMT+V                           AVVTAKVALN TTGL+VD  DFLKD
Sbjct:  914 TKLRGLAKKDMTLHFLCPVDMTRVPCGYGGEGHRFKQTRGWVRKISPVLQVAVVTAKVALNATTGLNVDPSDFLKD 989

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 7.330e-11
Identity = 41/76 (53.95%), Postives = 43/76 (56.58%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            SKL  VGKKDMTL F+CPVDMT+V                           AVVTAKVALN TTGL VDI DFLKD
Sbjct: 1133 SKLCGVGKKDMTLQFLCPVDMTQVPCGYGGEGYRFKETRSWVKKISPVLQVAVVTAKVALNATTGLHVDISDFLKD 1208

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-10
Identity = 39/76 (51.32%), Postives = 44/76 (57.89%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            SKLR VGKK+M LHF+CPVDMTKV                           AVVTAKVALN T GL+V+I +FLKD
Sbjct: 1066 SKLRGVGKKEMVLHFLCPVDMTKVPCGYGGEGYRFRETRGWVKKISPVLQVAVVTAKVALNATAGLNVNISEFLKD 1141

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BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.780e-10
Identity = 37/76 (48.68%), Postives = 43/76 (56.58%), Query Frame = 1

Query:    7 SKLRRVGKKDMTLHFVCPVDMTKV---------------------------AVVTAKVALNVTTGLSVDIWDFLKD 153
            SKLR VG K+MTLHF+CPVDMTKV                           A+VTAKVA+  T+GL VD+ DFLKD
Sbjct: 1059 SKLRGVGTKEMTLHFLCPVDMTKVPCGYDGDGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKD 1134

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8055.19390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5KRX0_9PHAE	5.260e-15	71.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1D3_9PHAE	7.780e-14	56.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1K4_9PHAE	1.420e-13	56.58	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KSY4_9PHAE	3.600e-13	54.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYD1_9PHAE	1.260e-12	55.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K516_9PHAE	6.010e-12	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G431_ECTSI	7.320e-11	51.32	LRR-GTPase of the ROCO family, incomplete sequence...	[more]
D8LJS7_ECTSI	7.330e-11	53.95	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FUC3_ECTSI	1.000e-10	51.32	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FUD0_ECTSI	4.780e-10	48.68	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8055	contig	Ecto-sp13_S_contig8055:3509..4023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	66.6
Seed ortholog evalue	3.8e-09
Seed eggNOG ortholog	2880.D8LF46
Model size	157
KEGG rclass	RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG ko	ko:K01188
KEGG Reaction	R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathway	ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons	2
EggNOG OGs	2CYK8@1,2S4YE@2759
EC	3.2.1.21
Cds size	153
CAZy	GH1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464078.7406664-CDS-Ecto-sp13_S_contig8055:3508..3583	1681464078.7406664-CDS-Ecto-sp13_S_contig8055:3508..3583	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8055 3509..3583 +
1681464078.7553654-CDS-Ecto-sp13_S_contig8055:3943..4021	1681464078.7553654-CDS-Ecto-sp13_S_contig8055:3943..4021	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8055 3944..4021 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8055.19390.1	prot_Ecto-sp13_S_contig8055.19390.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8055 3509..4021 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8055:3509..4023+
coding sequence from alignment at Ecto-sp13_S_contig8055:3509..4023+

protein sequence of mRNA_Ecto-sp13_S_contig8055.19390.1

>prot_Ecto-sp13_S_contig8055.19390.1 ID=prot_Ecto-sp13_S_contig8055.19390.1|Name=mRNA_Ecto-sp13_S_contig8055.19390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
RPSKLRRVGKKDMTLHFVCPVDMTKVAVVTAKVALNVTTGLSVDIWDFLK
D

mRNA from alignment at Ecto-sp13_S_contig8055:3509..4023+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8055.19390.1 ID=mRNA_Ecto-sp13_S_contig8055.19390.1|Name=mRNA_Ecto-sp13_S_contig8055.19390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8055:3509..4023+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCCGAGCAAACTTCGTCGCGTGGGGAAGAAGGACATGACACTTCATTT
CGTGTGCCCGGTCGACATGACTAAGGTGCCGTGCGGCTATGGTGGTGAAG
GCTACCGATTTCAGGAGACGCGTGACTGGGTGAAGAAAATGTCGCCTGTG
CTTCAGGTCAGACTTGAACTTGTAATACGCCGGTCGAAATCGGTGACACC
ACTTCAGGTGTGGTTCAACAGTGACGTTCTACAGTTCCAGATACCCCCCG
ATTGGTGGTGGAGAAAGTAAGTCGCATTCCGAATGAGCAATTCTTCCCAT
GCAATACGTGCTGCAGGCATCAAGTCTTCTGACTGTCAAGGCTGTGTTTC
CTGGCGAAATCCTTCGAAGCGTAAGTGACGATGAGCTTTGGTGGATTATT
TGTTATCCTCTTGGTCGTGCCCTCTCTCCCTTCAGGTGGCCGTGGTGACC
GCGAAGGTGGCGCTGAACGTAACGACAGGGCTGAGCGTGGATATCTGGGA
TTTCCTGAAGGACGT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8055:3509..4023+

>mRNA_Ecto-sp13_S_contig8055.19390.1 ID=mRNA_Ecto-sp13_S_contig8055.19390.1|Name=mRNA_Ecto-sp13_S_contig8055.19390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8055:3509..4023+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCCGAGCAAACTTCGTCGCGTGGGGAAGAAGGACATGACACTTCATTT
CGTGTGCCCGGTCGACATGACTAAGGTGGCCGTGGTGACCGCGAAGGTGG
CGCTGAACGTAACGACAGGGCTGAGCGTGGATATCTGGGATTTCCTGAAG
GAC