mRNA_Ecto-sp13_S_contig8053.19387.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8053.19387.1
Unique NamemRNA_Ecto-sp13_S_contig8053.19387.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8053.19387.1 vs. uniprot
Match: A0A6H5K714_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K714_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.410e-5
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -2 
Query:   68 QAVAYPGQTLVAVPAGGAVQAAGGGAPHE 154
            QAVAYPGQTLV VPAGGA+QAAGGGAPHE
Sbjct: 1054 QAVAYPGQTLVPVPAGGAMQAAGGGAPHE 1082
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8053.19387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K714_9PHAE7.410e-593.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8053contigEcto-sp13_S_contig8053:2012..2574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size563
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464078.4891171-CDS-Ecto-sp13_S_contig8053:2011..24041681464078.4891171-CDS-Ecto-sp13_S_contig8053:2011..2404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8053 2012..2404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464078.5014472-UTR-Ecto-sp13_S_contig8053:2404..25741681464078.5014472-UTR-Ecto-sp13_S_contig8053:2404..2574Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8053 2405..2574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8053.19387.1prot_Ecto-sp13_S_contig8053.19387.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8053 2012..2404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8053.19387.1

>prot_Ecto-sp13_S_contig8053.19387.1 ID=prot_Ecto-sp13_S_contig8053.19387.1|Name=mRNA_Ecto-sp13_S_contig8053.19387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
PRHRPCPPVARTQPPSPLLGSQPRAAPLPPPPARRPPRGPQRGSALGKPP
LGAAGAAGEAAAGSQGPAAEAQQPRSPPERRQQRSTRLAEAVARGSCWWP
STAPPPAPLGTQAGGVGAPPRRRERRQLPP*
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mRNA from alignment at Ecto-sp13_S_contig8053:2012..2574+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8053.19387.1 ID=mRNA_Ecto-sp13_S_contig8053.19387.1|Name=mRNA_Ecto-sp13_S_contig8053.19387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8053:2012..2574+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGGCATCGTCCCTGCCCCCCTGTTGCCCGAACCCAGCCGCCGAGCCC
CCTTCTCGGGAGTCAACCTCGTGCGGCGCCCCTCCCCCCGCCGCCTGCAC
GGCGCCCCCCGCGGGGACCGCAACGAGGGTCTGCCCTGGGTAAGCCACCG
CTTGGGGCGGCGGGGGCGGCGGGGGAGGCGGCGGCGGGAAGCCAAGGCCC
TGCTGCTGAGGCGCAGCAGCCCCGCTCGCCGCCGGAGCGCCGGCAACAGC
GTAGTACCCGGCTTGCTGAGGCGGTGGCGCGAGGGAGTTGTTGGTGGCCA
TCAACGGCGCCACCGCCGGCGCCGCTAGGTACGCAGGCGGGGGGGGTGGG
GGCCCCCCCAAGACGACGGGAGCGGCGGCAGTTGCCCCCGTAGTGGCCAC
CCCCGGCGCGTACTGCTGGGGCGGCGGCGCGCCCCGCCGCCGCCGCCGCT
ACTACTGTCCCCACCGGTGGCAGCTGCTGCTGCTGCTGCTGCTGCGGTAC
ACCGGCGGTGTCGACCACCGGCACCGCGTACGACGAGGGAGGCTGCTGTT
GGGCCGGGCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8053:2012..2574+

>mRNA_Ecto-sp13_S_contig8053.19387.1 ID=mRNA_Ecto-sp13_S_contig8053.19387.1|Name=mRNA_Ecto-sp13_S_contig8053.19387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8053:2012..2574+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGGCATCGTCCCTGCCCCCCTGTTGCCCGAACCCAGCCGCCGAGCCC
CCTTCTCGGGAGTCAACCTCGTGCGGCGCCCCTCCCCCCGCCGCCTGCAC
GGCGCCCCCCGCGGGGACCGCAACGAGGGTCTGCCCTGGGTAAGCCACCG
CTTGGGGCGGCGGGGGCGGCGGGGGAGGCGGCGGCGGGAAGCCAAGGCCC
TGCTGCTGAGGCGCAGCAGCCCCGCTCGCCGCCGGAGCGCCGGCAACAGC
GTAGTACCCGGCTTGCTGAGGCGGTGGCGCGAGGGAGTTGTTGGTGGCCA
TCAACGGCGCCACCGCCGGCGCCGCTAGGTACGCAGGCGGGGGGGGTGGG
GGCCCCCCCAAGACGACGGGAGCGGCGGCAGTTGCCCCCGTAG
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