mRNA_Ecto-sp13_S_contig8052.19386.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A6H5KE16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE16_9PHAE) HSP 1 Score: 154 bits (388), Expect = 8.340e-42 Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1
Query: 1 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDEDLGE 225
MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEP ETFSLRVAGNRCNVIVQLWDEDLG+
Sbjct: 580 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPLETFSLRVAGNRCNVIVQLWDEDLGK 654
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI) HSP 1 Score: 153 bits (386), Expect = 1.760e-41 Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query: 1 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDEDLGE 225
MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWS+P ETFSLRVAGNRCNVIVQLWDEDLG+
Sbjct: 2175 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSDPRETFSLRVAGNRCNVIVQLWDEDLGK 2249
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A7S2WMQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMQ5_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.540e-9 Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
+ ILSA+GLA AD+FGKSDPF V N + RT + K LDP W+E + +G V +Q+WD D
Sbjct: 89 IRILSARGLASADLFGKSDPFCEVYANGAVVHRTVVIDKNLDPDWAEERCYIPVPDSGACPEVRIQVWDAD 159
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A177VXY4_9BASI (Uncharacterized protein n=4 Tax=Tilletia TaxID=13289 RepID=A0A177VXY4_9BASI) HSP 1 Score: 59.7 bits (143), Expect = 1.240e-8 Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPE--TFSLRVAGNRCNVIVQLWDED 216
+TILSAK L AD GKSDP+ LN +E+G+T+T+ KTL+P W+E E T RVA I++++D D
Sbjct: 1174 VTILSAKNLRAADRNGKSDPYVKYRLNGKEVGKTKTIKKTLNPEWNEKLEEVTVPSRVAAES---IIEVYDFD 1243
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A7S2F4J3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4J3_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 5.600e-8 Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 4 LTILSAKGLAKADVFG-KSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNR------CN------VIVQLWDED 216
L +++A+GLAKAD FG KSDP+ +V +E+ RT+T+ K L+P W+ ET L V R C ++V++WDED
Sbjct: 45 LEVVAARGLAKADAFGGKSDPYCVVRWEGKEVHRTKTIKKELNPKWTN--ETAELPVEAWRRDDDDECENTSERVLVVEVWDED 126
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A482SMD2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMD2_9ARCH) HSP 1 Score: 55.8 bits (133), Expect = 2.790e-7 Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPE-TFSLRVAGNRCNVIVQLWDED 216
L I+SAK LA AD FGKSDPF + N +G+T T+++TL+P + E + V+ + C + + ++DED
Sbjct: 175 LYIVSAKNLANADTFGKSDPFMKIYWNGVLLGQTSTIYETLNPFYYEKYQLVIPSYVSLSHCELRLDVFDED 246
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A7S1XQH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQH6_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 2.820e-7 Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1 MLTILSAKGLAKADVFGKSDPFGMV----LLNRR------EIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
+L IL AKGLAKAD FG+SDP+ V L++R IG T T++KTLDP W + E F + A C + ++++D D
Sbjct: 567 VLEILRAKGLAKADTFGQSDPYVEVHVSEYLDQRPGGWHGHIGSTATVYKTLDPLWED--EAFVVSTA-RPCVLTLKVFDYD 645
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A1X2HC91_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HC91_SYNRA) HSP 1 Score: 55.1 bits (131), Expect = 5.260e-7 Identity = 24/72 (33.33%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDEDL 219
+ ++ A+ L D G SDP+ ++ +N+ EIG+TRT++KTL+P W TF + + + ++DED+
Sbjct: 846 IKVVRAENLQALDANGLSDPYAVLEINKTEIGKTRTVYKTLNPRWDH---TFDVWLNERNVEALALVYDEDM 914
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A6A4W5I9_AMPAM (Multiple C2 and transmembrane domain-containing protein 1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W5I9_AMPAM) HSP 1 Score: 53.5 bits (127), Expect = 1.770e-6 Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 10 ILSAKGLAKADVFGKSDPFGMV-LLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
+L A+GLA AD+ G+SDPF ++ L+NRR +T+T++KTL+P W++ FSL V + V ++D+D
Sbjct: 369 VLRARGLAAADLNGRSDPFCVLQLVNRRR--QTQTVYKTLEPYWNK---VFSLEVNDIHSVLEVTVYDQD 433
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A6A4WMR3_AMPAM (Multiple C2 and transmembrane domain-containing protein 1 n=5 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WMR3_AMPAM) HSP 1 Score: 53.5 bits (127), Expect = 1.830e-6 Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 10 ILSAKGLAKADVFGKSDPFGMV-LLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
+L A+GLA AD+ G+SDPF ++ L+NRR +T+T++KTL+P W++ FSL V + V ++D+D
Sbjct: 519 VLRARGLAAADLNGRSDPFCVLQLVNRRR--QTQTVYKTLEPYWNK---VFSLEVNDIHSVLEVTVYDQD 583 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8052.19386.1 >prot_Ecto-sp13_S_contig8052.19386.1 ID=prot_Ecto-sp13_S_contig8052.19386.1|Name=mRNA_Ecto-sp13_S_contig8052.19386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPback to top mRNA from alignment at Ecto-sp13_S_contig8052:6505..6732+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8052.19386.1 ID=mRNA_Ecto-sp13_S_contig8052.19386.1|Name=mRNA_Ecto-sp13_S_contig8052.19386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8052:6505..6732+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8052:6505..6732+ >mRNA_Ecto-sp13_S_contig8052.19386.1 ID=mRNA_Ecto-sp13_S_contig8052.19386.1|Name=mRNA_Ecto-sp13_S_contig8052.19386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8052:6505..6732+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |