mRNA_Ecto-sp13_S_contig8052.19386.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8052.19386.1
Unique NamemRNA_Ecto-sp13_S_contig8052.19386.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A6H5KE16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE16_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 8.340e-42
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDEDLGE 225
            MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEP ETFSLRVAGNRCNVIVQLWDEDLG+
Sbjct:  580 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPLETFSLRVAGNRCNVIVQLWDEDLGK 654          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.760e-41
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDEDLGE 225
            MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWS+P ETFSLRVAGNRCNVIVQLWDEDLG+
Sbjct: 2175 MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSDPRETFSLRVAGNRCNVIVQLWDEDLGK 2249          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A7S2WMQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMQ5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.540e-9
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
            + ILSA+GLA AD+FGKSDPF  V  N   + RT  + K LDP W+E      +  +G    V +Q+WD D
Sbjct:   89 IRILSARGLASADLFGKSDPFCEVYANGAVVHRTVVIDKNLDPDWAEERCYIPVPDSGACPEVRIQVWDAD 159          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A177VXY4_9BASI (Uncharacterized protein n=4 Tax=Tilletia TaxID=13289 RepID=A0A177VXY4_9BASI)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-8
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPE--TFSLRVAGNRCNVIVQLWDED 216
            +TILSAK L  AD  GKSDP+    LN +E+G+T+T+ KTL+P W+E  E  T   RVA      I++++D D
Sbjct: 1174 VTILSAKNLRAADRNGKSDPYVKYRLNGKEVGKTKTIKKTLNPEWNEKLEEVTVPSRVAAES---IIEVYDFD 1243          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A7S2F4J3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4J3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.600e-8
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    4 LTILSAKGLAKADVFG-KSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNR------CN------VIVQLWDED 216
            L +++A+GLAKAD FG KSDP+ +V    +E+ RT+T+ K L+P W+   ET  L V   R      C       ++V++WDED
Sbjct:   45 LEVVAARGLAKADAFGGKSDPYCVVRWEGKEVHRTKTIKKELNPKWTN--ETAELPVEAWRRDDDDECENTSERVLVVEVWDED 126          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A482SMD2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMD2_9ARCH)

HSP 1 Score: 55.8 bits (133), Expect = 2.790e-7
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPE-TFSLRVAGNRCNVIVQLWDED 216
            L I+SAK LA AD FGKSDPF  +  N   +G+T T+++TL+P + E  +      V+ + C + + ++DED
Sbjct:  175 LYIVSAKNLANADTFGKSDPFMKIYWNGVLLGQTSTIYETLNPFYYEKYQLVIPSYVSLSHCELRLDVFDED 246          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A7S1XQH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQH6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.820e-7
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 MLTILSAKGLAKADVFGKSDPFGMV----LLNRR------EIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
            +L IL AKGLAKAD FG+SDP+  V     L++R       IG T T++KTLDP W +  E F +  A   C + ++++D D
Sbjct:  567 VLEILRAKGLAKADTFGQSDPYVEVHVSEYLDQRPGGWHGHIGSTATVYKTLDPLWED--EAFVVSTA-RPCVLTLKVFDYD 645          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A1X2HC91_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HC91_SYNRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.260e-7
Identity = 24/72 (33.33%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    4 LTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDEDL 219
            + ++ A+ L   D  G SDP+ ++ +N+ EIG+TRT++KTL+P W     TF + +       +  ++DED+
Sbjct:  846 IKVVRAENLQALDANGLSDPYAVLEINKTEIGKTRTVYKTLNPRWDH---TFDVWLNERNVEALALVYDEDM 914          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A6A4W5I9_AMPAM (Multiple C2 and transmembrane domain-containing protein 1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W5I9_AMPAM)

HSP 1 Score: 53.5 bits (127), Expect = 1.770e-6
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   10 ILSAKGLAKADVFGKSDPFGMV-LLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
            +L A+GLA AD+ G+SDPF ++ L+NRR   +T+T++KTL+P W++    FSL V      + V ++D+D
Sbjct:  369 VLRARGLAAADLNGRSDPFCVLQLVNRRR--QTQTVYKTLEPYWNK---VFSLEVNDIHSVLEVTVYDQD 433          
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Match: A0A6A4WMR3_AMPAM (Multiple C2 and transmembrane domain-containing protein 1 n=5 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WMR3_AMPAM)

HSP 1 Score: 53.5 bits (127), Expect = 1.830e-6
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   10 ILSAKGLAKADVFGKSDPFGMV-LLNRREIGRTRTLFKTLDPCWSEPPETFSLRVAGNRCNVIVQLWDED 216
            +L A+GLA AD+ G+SDPF ++ L+NRR   +T+T++KTL+P W++    FSL V      + V ++D+D
Sbjct:  519 VLRARGLAAADLNGRSDPFCVLQLVNRRR--QTQTVYKTLEPYWNK---VFSLEVNDIHSVLEVTVYDQD 583          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8052.19386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KE16_9PHAE8.340e-4297.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEV4_ECTSI1.760e-4196.00C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S2WMQ5_9STRA1.540e-945.07Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A177VXY4_9BASI1.240e-846.58Uncharacterized protein n=4 Tax=Tilletia TaxID=132... [more]
A0A7S2F4J3_9STRA5.600e-840.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A482SMD2_9ARCH2.790e-740.28Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S1XQH6_9STRA2.820e-742.68Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1X2HC91_SYNRA5.260e-733.33Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
A0A6A4W5I9_AMPAM1.770e-642.86Multiple C2 and transmembrane domain-containing pr... [more]
A0A6A4WMR3_AMPAM1.830e-642.86Multiple C2 and transmembrane domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8052contigEcto-sp13_S_contig8052:6505..6732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score152.5
Seed ortholog evalue7.8e-35
Seed eggNOG ortholog2880.D8LEV4
Model size228
KEGG koko:K12486
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1030@1,KOG1030@2759
Cds size228
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464078.4569297-CDS-Ecto-sp13_S_contig8052:6504..67321681464078.4569297-CDS-Ecto-sp13_S_contig8052:6504..6732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8052 6505..6732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8052.19386.1prot_Ecto-sp13_S_contig8052.19386.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8052 6505..6732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8052.19386.1

>prot_Ecto-sp13_S_contig8052.19386.1 ID=prot_Ecto-sp13_S_contig8052.19386.1|Name=mRNA_Ecto-sp13_S_contig8052.19386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MLTILSAKGLAKADVFGKSDPFGMVLLNRREIGRTRTLFKTLDPCWSEPP
ETFSLRVAGNRCNVIVQLWDEDLGE*
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mRNA from alignment at Ecto-sp13_S_contig8052:6505..6732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8052.19386.1 ID=mRNA_Ecto-sp13_S_contig8052.19386.1|Name=mRNA_Ecto-sp13_S_contig8052.19386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8052:6505..6732+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGACGATTTTGTCAGCAAAGGGTCTCGCGAAGGCCGACGTGTTCGG AAAGTCGGACCCTTTCGGCATGGTTCTTCTCAACAGGCGGGAGATAGGTC GCACGCGCACCCTGTTCAAGACTCTCGACCCTTGTTGGAGCGAGCCCCCA GAGACATTTTCGCTGCGCGTCGCAGGCAACCGCTGCAACGTCATTGTCCA GCTATGGGACGAGGATTTGGGTGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8052:6505..6732+

>mRNA_Ecto-sp13_S_contig8052.19386.1 ID=mRNA_Ecto-sp13_S_contig8052.19386.1|Name=mRNA_Ecto-sp13_S_contig8052.19386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8052:6505..6732+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGACGATTTTGTCAGCAAAGGGTCTCGCGAAGGCCGACGTGTTCGG
AAAGTCGGACCCTTTCGGCATGGTTCTTCTCAACAGGCGGGAGATAGGTC
GCACGCGCACCCTGTTCAAGACTCTCGACCCTTGTTGGAGCGAGCCCCCA
GAGACATTTTCGCTGCGCGTCGCAGGCAACCGCTGCAACGTCATTGTCCA
GCTATGGGACGAGGATTTGGGTGAGTGA
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