mRNA_Ecto-sp13_S_contig8049.19381.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8049.19381.1
Unique NamemRNA_Ecto-sp13_S_contig8049.19381.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: D8LGB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB9_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.420e-66
Identity = 162/328 (49.39%), Postives = 194/328 (59.15%), Query Frame = 2 
Query:  398 RKTGCWYRSFRH*AHRCGQAAGARQAGSDGQDSRRCGVETHRGRGRTAEGDDLGPGPQGILRRHQKRPMQRVLRCQRGRQWLGVHEQSWCH-GQGRDGLQANFWRSSLVGWIASFAGAALKAGDCLIQTRRVVKITDLAPDAVECSKLARSLALRLTDGLTDDTIATSR-AKNKNTHNAVGVGWGAGESTSRQGSGALADGVSEEDFMEWFVKEFASCESSNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVLVILAGADVRPAETSNASEGGFIQSRVSAPSHDGVVQQLAAELEALQAAMKSDKDKHHA 1375
            R    W R  R  A+  G+AAGARQAGSDGQDS R  V+T+RGRG TAEG  L PG  G+L  HQ R +     C+R +      +  +C   QG   LQ       LVG +A F G                   DLAPDAVEC KLAR++ALRLTDGL D  IATS  A+ K T NA GVGW AG S      G L DGVSEE  MEWF++E  + E S+       R   AG RLGK+HL K+LTAVGQDC QG N+T  KV+ LV V+L  AD+RPAETS+A  GG ++S VS P+HDG +    AELE+L    K+DK+KH A
Sbjct:   46 RTIAAWQRKRR--ANIKGKAAGARQAGSDGQDSGRDDVKTYRGRGLTAEGGGLSPGSHGVLHCHQ-RSLSPAAWCRRAKSVPSASDPIYCDIVQGGTALQLMSGAVPLVGGLADFTG-------------------DLAPDAVECCKLARTVALRLTDGLPDGPIATSHDAEEKRTPNAAGVGWAAGGSKF----GVLTDGVSEEAVMEWFIEEVTNYEPSD-------RRETAGSRLGKRHLRKILTAVGQDCPQGANDTGAKVSLLVYVVLPEADIRPAETSSAWGGGLVRSPVSVPTHDGNL----AELESL----KADKEKHSA 332
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 8.710e-52
Identity = 157/393 (39.95%), Postives = 205/393 (52.16%), Query Frame = 2 
Query:  461 GARQAGSDGQDSRRCGVETHRGRGRTAEGDDLGPGPQGILRRHQKRPMQRVLRCQRGRQWLGVHEQSWCHGQGRDGLQANFWRSSLVGWIASFAGAALKAGDCLIQTRRVVKITDLAPDAVECSKLARSLALRLTDGLTDDTIATSR-AKNKNTHNAVGVGWGAGESTSR--QGSGALADGVSEEDFMEWFVKEFASCESSNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVLVILAGADVRPAETSNASEGGFIQSRVS-APSHDGVVQQLAAELEALQAAMKSDKDKHHAELGXXXXXXXXXXXXXXXXXGKVATFEKRLSKSHGGFGGSVDARGGYILAQEQKTE-TQEELNERMEYPGRAENRQTVTPGELR 1624
            GARQAGS+GQ S              ++G  L PG + +L  HQ   MQ + R QR RQ LG ++Q   +                    A FA  ALKAGD  IQTRRV+K+TDLAPDAVEC  +A+ L LRLTD L+D+TI TS   +    H+A G G GAG       Q +G L D  S+EDFMEWF +E ASC  +N G +    E + GRRLGK+H+  +L AV + CLQGT+   EKV +L+ V++  A  +P   SNA E  F Q   + APSHDG       +L A  AAM++  +    E G                  KV+T EK + K  G     VD  GG  LA ++K + TQEE+ + M     A  ++ VT  +LR
Sbjct:  314 GARQAGSNGQGSXXXXXXXXXXXXXASKGACLTPGFESVLHHHQNGCMQCIPRWQRRRQSLGSYKQDRGYEH------------------AGFAAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGIGACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPNNTGKSTP--EEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDG-----GLDLHAEFAAMQAKLEALEIENGKLTR--------------KVSTMEKSIPKPQGEPSDEVDVGGGQALAFKRKVKKTQEEVWQEMAESAAASGQRPVTQDQLR 667
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.050e-37
Identity = 81/114 (71.05%), Postives = 90/114 (78.95%), Query Frame = 2 
Query: 1886 SALRWPILDGFMWAVVGSRSKSSS--SLCGISGNTSVDVVEQYGFGLSLIDRIVGYHPYRILGSALFSRPHRHHLPGPNTATRRSGVLLRAVGETLVVDSMFVLRFSCHPRLWE 2221
            SALRWPILDGFMW VVGSRSKSSS   LCG++G T VD +EQ GFGLSLIDRIV +HPY +LG ALFS PH HHLPG + ATRRS V++RAVGETLVVDS+F L  S     WE
Sbjct:  280 SALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEATRRSWVMVRAVGETLVVDSLF-LALSLSSETWE 392
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.900e-33
Identity = 109/241 (45.23%), Postives = 132/241 (54.77%), Query Frame = 2 
Query:  716 LVGWIASFAGAALKAGDCLIQTRRVVK-----------------------ITDLAPDAVECSKLARSLALRLTDGLTDDTIATSRAKNKNTHNAVGV-GWGAGESTSRQGSGALADGVSEEDFMEWFVKEFASCESSNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVLVILAGADVRPAETSNASEGGFIQ-SRVSAPSHDGVVQQ------LAAELEALQAA 1345
            +VG +ASFA AALKA D  +QTRRVVK                       ITDLA DAVE   LAR LALR+T+GL   TI+T       T N+VG  GW           GAL DG SEE  MEWF +E A+ E++   +     E QAGRRLGKQHL KLL AVGQ  L GTN T EKV +L+ VI  G+  R  +   A +   ++   V APSHDG + +      L A+LEAL+ A
Sbjct:  156 VVGGLASFAAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTIST-------TDNSVGGRGW-------NLDLGALPDGTSEEAVMEWFTEEVANHEANTTASRGTPAE-QAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKVEKLLEVIAGGSGSRVTKPPRAEDKSLVEYPAVPAPSHDGDLDRDAEFAALKAKLEALELA 381
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 6.740e-33
Identity = 86/180 (47.78%), Postives = 113/180 (62.78%), Query Frame = 2 
Query:  716 LVGWIASFAGAALKAGDCLIQTRRVVKITDLAPDAVECSKLARSLALRLTDGLTDDTIATS-RAKNKNTHNAVGVGWGAGESTSRQGSGALADGVSEEDFMEWFVKEFASCESSNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVLVILAGADVRPAETSNAS 1252
            +V  +A  A AALKAGD  +QTRRV KI D+APD+ +C  LAR+LAL+L+DG  D T+ T+  A+ + +H   G+G   G     Q  GA  D  +EE  M+WFV+E A  E +N  A      VQAGR+LGK+HL  LL AVG+DCL+GTN   EKV  LV +IL  A+ R   TS+ +
Sbjct:  545 VVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHVT 724
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.300e-33
Identity = 85/181 (46.96%), Postives = 112/181 (61.88%), Query Frame = 2 
Query:  716 LVGWIASFAGAALKAGDCLIQTRRVVKITDLAPDAVECSKLARSLALRLTDGLTDDTIAT-SRAKNKNTHNAVGVGWGAGESTSRQGSGALADGVSEEDFMEWFVKEFASCESSNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVLVILAGADVRPAETSNASE 1255
            +V  +A  A AALKAGD  +QTRRV KI D+APD+ +C  LAR+LAL+L+DG  D T+ T   A+ + TH   G+G   GE    Q  GA  D  +EE  M+WFV+E A  E +   A      VQAGR+LG +HL  LL AVG+DCL+GTN   EKV  LV +IL  A+ +   TS+ ++
Sbjct:  572 VVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERKVGSTSHGTQ 752
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.220e-32
Identity = 86/180 (47.78%), Postives = 112/180 (62.22%), Query Frame = 2 
Query:  716 LVGWIASFAGAALKAGDCLIQTRRVVKITDLAPDAVECSKLARSLALRLTDGLTDDTIATS-RAKNKNTHNAVGVGWGAGESTSRQGSGALADGVSEEDFMEWFVKEFASCESSNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVLVILAGADVRPAETSNAS 1252
            +V  +A  A AALKAGD  +QTRRV KI D+APD+ +C  LAR+LAL+L+DG  D T+ T+  A+ + TH   G+G   G     Q  GA  D  +EE  M+WFV+E A  E +N  A      VQAGR+LG +HL  LL AVG+DCL+GTN   EKV  LV +IL  A+ R   TS+ +
Sbjct:  757 VVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEAERRVGSTSHGT 936
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 3.190e-31
Identity = 78/145 (53.79%), Postives = 104/145 (71.72%), Query Frame = 3 
Query:  294 ARLEPMFRVQVASFADLDELTRENHETLQEIKQLLEKPAAGIVPSGTELTDADKLQELDKLVAMAKTLGDVASRHIEDEDVQRKEMTLGPVPKAYYAAIRSGLCNAYFAASVVGSGLVSTSKVGVMGKAGTAFKLISGAVPWSAG 728
            A ++ +FRVQ++S A LD L +EN E L++I+++++ PAAG      EL+D ++ ++L  L+ MAK LG+VA  H ED+DVQRKE+ L P  KAYY A+RSGLCNAY AASV+ S  VSTSK G MGK GTA  L+S AVP  +G
Sbjct:  471 AEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISG 615
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 7.710e-31
Identity = 82/158 (51.90%), Postives = 105/158 (66.46%), Query Frame = 3 
Query:  279 RAEEHARLEP--------MFRVQVASFADLDELTRENHETLQEIKQLLEKPAAGIVPSGTELTDADKLQELDKLVAMAKTLGDVASRHIEDEDVQRKEMTLGPVPKAYYAAIRSGLCNAYFAASVVGSGLVSTSKVGVMGKAGTAFKLISGAVPWSAG 728
            R+ EHA L P        +FRVQ++S A  D L REN E L++I ++++ PAAG +    E++D ++ ++L  LV MAK LG+VA  H ED DVQRKE+ L P  KAYY A+RSGLCNAY AASV+ S  VST K G MGK GTA  L+S AVP  +G
Sbjct:  418 RSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISG 575
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BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.240e-30
Identity = 93/225 (41.33%), Postives = 131/225 (58.22%), Query Frame = 2 
Query:  716 LVGWIASFAGAALKAGDCLIQTRRVVKITDLAPDAVECSKLARSLALRLTDGLTDDTIATSRAKNKNTHNAVGVGWGAGESTSRQGSGALADGVSEEDFMEWFVKEFASCESSNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVLVILAGADVRPAETSNASEGGFIQSR-VSAPSHDGVVQQLA--AELEALQAAMKSDKDKHHAEL 1381
            L+G +   AG AL+AGD  +QTRR+VKIT +APD VEC  LAR LAL+LTDGL ++  AT      + +N V V   AG S   +G+  +   +SEED  ++ ++E  + E ++ G          G+RLGK+HL KLL A+   CL G+N T +K+  L+L IL  AD +PA T    +   ++S    A +HD  +   A  A ++A  AA+KS KDK  AEL
Sbjct:  300 LIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATD-----DDNNQVWVNTTAGGSGCGRGADMMPGDMSEEDVFKYLLEEVTAYERNDHG----------GKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALKSAKDKQQAEL 509
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8049.19381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LGB9_ECTSI1.420e-6649.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8A7_ECTSI8.710e-5239.95Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JFA4_9PHAE2.050e-3771.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEA4_9PHAE2.900e-3345.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI6.740e-3347.78Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI9.300e-3346.96Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA0_ECTSI1.220e-3247.78Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FH89_ECTSI3.190e-3153.79Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KZF6_9PHAE7.710e-3151.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L2_ECTSI1.240e-3041.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8049contigEcto-sp13_S_contig8049:443..6080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score193.4
Seed ortholog evalue2e-46
Seed eggNOG ortholog2880.D7G8A7
Model size2914
Hectar predicted targeting categoryother localisation
Exons11
EggNOG OGs2E19U@1,2S8MQ@2759
Cds size1149
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8049.19381.1prot_Ecto-sp13_S_contig8049.19381.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8049 1244..4916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.977883-UTR-Ecto-sp13_S_contig8049:442..9511681464077.977883-UTR-Ecto-sp13_S_contig8049:442..951Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8049 443..951 +
1681464077.9926808-UTR-Ecto-sp13_S_contig8049:1151..12431681464077.9926808-UTR-Ecto-sp13_S_contig8049:1151..1243Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8049 1152..1243 +
1681464078.1312494-UTR-Ecto-sp13_S_contig8049:4916..60801681464078.1312494-UTR-Ecto-sp13_S_contig8049:4916..6080Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8049 4917..6080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464078.0030527-CDS-Ecto-sp13_S_contig8049:1243..13191681464078.0030527-CDS-Ecto-sp13_S_contig8049:1243..1319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 1244..1319 +
1681464078.0151212-CDS-Ecto-sp13_S_contig8049:1707..18261681464078.0151212-CDS-Ecto-sp13_S_contig8049:1707..1826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 1708..1826 +
1681464078.0324214-CDS-Ecto-sp13_S_contig8049:1944..20981681464078.0324214-CDS-Ecto-sp13_S_contig8049:1944..2098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 1945..2098 +
1681464078.0513754-CDS-Ecto-sp13_S_contig8049:2618..27581681464078.0513754-CDS-Ecto-sp13_S_contig8049:2618..2758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 2619..2758 +
1681464078.0607567-CDS-Ecto-sp13_S_contig8049:2875..29681681464078.0607567-CDS-Ecto-sp13_S_contig8049:2875..2968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 2876..2968 +
1681464078.070828-CDS-Ecto-sp13_S_contig8049:3312..35701681464078.070828-CDS-Ecto-sp13_S_contig8049:3312..3570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 3313..3570 +
1681464078.0853422-CDS-Ecto-sp13_S_contig8049:3748..38121681464078.0853422-CDS-Ecto-sp13_S_contig8049:3748..3812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 3749..3812 +
1681464078.102832-CDS-Ecto-sp13_S_contig8049:4053..41281681464078.102832-CDS-Ecto-sp13_S_contig8049:4053..4128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 4054..4128 +
1681464078.1124117-CDS-Ecto-sp13_S_contig8049:4582..47081681464078.1124117-CDS-Ecto-sp13_S_contig8049:4582..4708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 4583..4708 +
1681464078.1215887-CDS-Ecto-sp13_S_contig8049:4872..49161681464078.1215887-CDS-Ecto-sp13_S_contig8049:4872..4916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8049 4873..4916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8049.19381.1

>prot_Ecto-sp13_S_contig8049.19381.1 ID=prot_Ecto-sp13_S_contig8049.19381.1|Name=mRNA_Ecto-sp13_S_contig8049.19381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp
MQRVLRCQRGRQWLGVHEQSWCHGQGRDGLQANFWRSSLVGWIASFAGAA
LKAGDCLIQTRRVVKITDLAPDAVECSKLARSLALRLTDGLTDDTIATSR
AKNKNTHNAVGVGWGAGESTSRQGSGALADGVSEEDFMEWFVKEFASCES
SNCGAAAEIREVQAGRRLGKQHLHKLLTAVGQDCLQGTNNTWEKVNRLVL
VILAGADVRPAETSNASEGGFIQSRVSAPSHDGVVQQLAAELEALQAAMK
SDKDKHHAELGALKSDKEKHHAEVEALKGKVATFEKRLSKSHGGFGGSVD
ARGGYILAQEQKTETQEELNERMEYPGRAENRQTVTPGELRVTQAHEEEV
GRETGHLGARVAALEENRGKKKGLRLRWRGNR*
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mRNA from alignment at Ecto-sp13_S_contig8049:443..6080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8049.19381.1 ID=mRNA_Ecto-sp13_S_contig8049.19381.1|Name=mRNA_Ecto-sp13_S_contig8049.19381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5638bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8049:443..6080+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATATTTTTCATATTGTTTTTGTTGTCGATTTGCGCCGGAGCAGTACCGGA
GGAAAGACAATGTGGCGGCACATCTTGCAGTCTTTTTCATTCTTTACGTT
TGGCATGTGCGAATATGCCTGCTGAATCCGTGTTCCTTTGTTCGAATCGG
TGACGTACCTCCCTCTCGCCAATACAGGTGGACCTGACAAGAACGAGTCA
TTGTCGCCATGGAGAAGCCGGCTGCAGGCGGAGTTAGTGGAGAAAAAACG
GGCCGAGCAGGAACGCACCCAGCAGAGTCGGGCTGAGGAACACGCGAGAT
TGGAGCCCATGTTTCGGGTGCAGGTGGCTTCCTTTGCAGATTTGGATGAG
CTCACCAGAGAGAATCACGAAACTCTGCAGGAGATTAAACAACTCCTCGA
AAAACCGGCTGCTGGTATCGTTCCTTCCGGCACTGAGCTCACCGATGCGG
ACAAGCTGCAGGAGCTCGACAAGCTGGTAGCGATGGCCAAGACTCTAGGC
GATGTGGCGGTGAGTGTTACATGAAAGAAACCTCTTGGTCGTAGCAATTA
TGGGAGACTCTGTTGAGCCAAATGGCGTTCTACGCTTGGTGTTGATATTT
TGCTCCTGGTTCCTTTCCCAAATGCGCACGTATCGAGTACGTAAAATTGC
GGCCTCTTTGGTTGCTTTCAACGTGAGATGGAATTTCGCCATGTTGCCCA
ACTGCACAGTCGAGACACATAGAGGACGAGGACGTACAGCGGAAGGAGAT
GACCTTGGGCCCGGTCCCCAAGGCATATTACGCCGCCATCAGAAGCGGCC
TATGCAACGCGTACTTCGCTGCCAGCGTGGTCGGCAGTGGCTTGGTGTCC
ACGAGCAAAGTTGGTGTCATGGGCAAGGTGAGTGCCGTGGGTAGCCAGCT
CATACGTGTGTTGACCATGATGGGTCGCCCTCACGTCCTGAAGGTATCAT
AACAGCCTTTGGATTTTTCCAAGATAAGGGGTCCAAACCCCGGCCGTGAC
ACTCCTTTTACAAAGAAGCGCTTGTTCGTGGATACGCAAGAATCAACTCA
AAATGTCGGTGAGGGAAAGTATCGCTGCCTTTTGCGTGAAGGCAAGAATG
CTGATGTTGACTCCGGCCCCAAAGCTCTCCAGAGGTGTAGTCCGACGTGC
GCAGAATAGATGATATTGGAATCAAGAAAGGAAATAATCGACTCTTGTTT
TATGTGCTAAGCTTGTCGTGCTTATGTGCCAACAGAAAAGCGACTCGGTT
TTTTCTGTCGTGCAGGCAGGGACGGCCTTCAAGCTAATTTCTGGCGCAGT
TCCCTGGTCGGCTGGATAGCTAGCTTCGCGGGCGCCGCATTGAAGGCTGG
AGACTGCCTTATTCAAACTCGACGAGTGGTCAAGGTGATCTGGGTTTCGT
ACTTGCGGTGTCTCGGATCACGACACGCGTGCTCGCATGCCCAGCCTGCG
ATGGCTTTGATGAGCGCCAACTAAGCCCACTTTATTTGTTTTTTCTTGGC
AGATCACCGATTTAGCGCCGGATGCGGTTGAATGTTCCAAGCTTGCGAGG
AGTTTGGCCCTACGACTCACCGACGGTCTTACGGACGACACCATCGCGAC
GTCGCGTGCCAAAAACAAAAACACGCACAATGCAGTGGGTGTGGGCTGGG
GTGCCGGTGAGGGTGATGTTTGACAATGGTCAAAGTCCAAGCATTTTGCT
TGTACCTGGCCAAACAGTGGCTTCGCGTAAGGCTGTGTGTGTTTATATGG
CCAACAAATCACCGATCTGTGCAAAAACATGGGACCTAGCGAAGACACCA
AGATGTGGTCCCGAAGACGTGTATTCTCACACATTGCGTGTACTCCGAAA
GCCATGGCAGTTCGATCACATTCAACAGAGGCACAGCTGCACAGGATTCG
GATTCACAGTTTTCCGTTTTGTTGTGCGTCCGCCGGCAGCAGGGTAGGCT
GGTGTGTGGGATGTCGGGCAAGCGGAGGTACCCTCCTCGTCTTTCAAAAA
TACGAAATTCCCACGCACATGCGTTGAAGATCAGAAGCGTAGTTTTTCTT
TTTCCACGTGAAATGTCTCGGATCCACCGCCATTGCTAGTCGAAGCGCAT
CGCCCCGGTTGGTGTTTTGTTGCAAGATATCAGCTGTCTATCACAAACCG
TGTGTGGTGGTGTTTCCGTGTTTTAGGCGAGTCCACATCAAGACAGGGCT
CTGGCGCCTTGGCAGACGGTGTGAGCGAGGAAGACTTTATGGAGTGGTTT
GTCAAAGAGTTTGCGAGCTGCGAGTCTAGCAACTGCGGAGCAGCGGCAGA
GATCCGGGAGGTGCAGGTGAACCATTCGTAGAATGGTCAGCGCTTTGACG
TTGTTTGATCCGCGGAACAAAGCTCTTCCGCTACGATACACATGCTTGTT
TGACGTTTTTCATGCGCGCTTTCATGTCTCCAGGCTGGGAGGCGGCTTGG
CAAGCAACACCTCCACAAGCTGTTGACGGCAGTGGGTCAGGATTGCCTTC
AGGGCACGAACAACACCTGGGAAAAGGTGAAACGCTTGTCTGCGAAAGAA
CCATGGTTGTGGTTTGTGCTGCGTTTTGTCGCTCGCTCGTGCTCTTGACT
GGTAACGTTTTCCCTTTGCTTTGAGGAGAATGACTACGCGAGGATTGTTT
TGATTATTCCCACACCGCAAAACACTACGGATGCAATTTTAGTTTCAACG
GTCGGGGTGACTACTTCCTTACCACGCTCCGTGAATGCGATGCCCTCCTT
TAGTCAAGAATGGGGGAGTTGTGATGGCGCGAATGTTTCGACAAAAATCT
GACTGAAGCGCGTCACACGTTCCGGCAAACGCAACATCTTCTACGTGATT
TTGCTTGTGCGACGATCCAGGTCAACCGATTGGTGTTGGTGATTCTGGCG
GGGGCTGACGTTCGCCCCGCCGAAACCTCGAACGCCTCAGAAGGAGGTTT
CATCCAATCTCGTGTGTCGGCGCCATCCCACGATGGCGTTGTTCAGCAGT
TGGCGGCAGAACTAGAAGCATTGCAAGCTGCCATGAAATCCGACAAGGAT
AAGCACCACGCGGAGCTAGGAGCATTGAAATCTGACAAGGAGAAGCACCA
TGCGGAGGTAGAAGCATTGAAGGGCAAGGTAAGCGGGATTCCTTATCGGT
CCAATATTTATGACGGAAACTCTCTACTCACGTAATGTTGTGAGCCTCGC
TAGGGCGTTGACCTCTTGATCATCTCTCTAGCTGAATGAGACAAGTTGTA
TCTCGAAACTGAGATTGCTCTCGTCTTATGTTTCATTCCGTTCTCTCTTC
GGCTAGGTCGCCACCTTCGAGAAACGCCTCTCGAAGTCTCACGGGGGTTT
TGGGGGCTCGGTGGATGCCAGTGAGTTTGGTGCTTTTTCTTGGGCGCCAC
CTGTCGTACGAGATCCACGTTGACTTCTTCGCGGTCTGGCCCGTTTAGCC
CAACACACCCCGAACCGAACGTGAAACTGCCATTATACGCAGCCTGCATA
GTGAAGGCCAGCCAGACGCCTTTGGCACCCAATATGAGCCACAGCTTCGT
GCAATCGCCACCACACAACTCGTAGTCGCTTTCCTCCGCTTTTCAACGTC
GACCATTTTAGGAGGAGGGTATATTCTCGCTCAGGAGCAAAAGACCGAGA
CCCAAGAGGAATTGAATGAGAGGATGGAGTATCCAGGTGCGCTCTTGATC
CAGACTAGCATTGGTGGGCTCACCTGGTCGTACTTGGCGGTCTCTTCAAA
GATTGTCGCTTCTTTTCGGTACGGACGCCGTGTTCAGCAGTTGCCTCGAT
TAAATGCTAGCCTCAAATGCTCGCACTTGATGACGTTTTTCCCGTAGAGG
GTGAGGGTTTGGTTTGAATAGGTGACCAATGAAGTATTGAAAAGGGTTGC
TCTCACGAGACCCCCCGGTTGTTCGCGACTAGCCCTTCGTTGCAACGCTA
CTTCATGCCTCTCCTCGTCGCGGTGCGAGCTTGAGTTACTTCGGCGGCAA
ATTAACGCTCCTCCTTGTCTTCTTGTTACTCTTGTTCTCTTTTGTGTCAG
ATCGTTGTCTCATAGTAGGACATACTTGTATTTTCCGTGTCGCTTACATG
GCCTTTTATTCCGTAACCGTTTCTCGCCGTGAATTCGCAGGTCGCGCTGA
AAATCGGCAAACCGTCACCCCCGGCGAGCTTCGGGTCACCCAGGCTCACG
AAGAAGAAGTCGGCAGAGAGACGGGCCACCTGGGGGCACGAGTTGCTGCA
CTTGAAGAAAACCGAGGCGAGTTGAAGGAGCTTAGCCCCGCAGTTGCATT
TTTGGAACCGCTAACGCTATCAGTGCTGTCTCTATGATGAGGCTGGTACG
CAACTGACACGTTATATAGGTGCTCAAGTTGTTTCCAGCAGTGGTTTTGA
CTCTTTCGGTTTAACACCTGCCGTTCGCAGGGAAGAAAAAGGGGCTTCGA
CTTCGCTGGCGCGGCAATCGCTGACTCAGCACGGTAGCAGCGGAATCTGA
ACTGATCGAAGAGCGGGGACGACGCAGCCTTTTGTGAGGCACTCCACACA
CCTTTACGAGGTGAAAACAGCGGGAGGTATCACGACACATCTGGTCGTCT
GGCCTGCCGTCGGCCCTGAGATGGCCAATCTTGGATGGTTTTATGTGGGC
TGTGGTGGGATCACGCTCGAAGTCGAGTTCGTCTCTGTGTGGAATATCAG
GGAACACGTCGGTGGACGTAGTGGAGCAATATGGGTTTGGTCTGTCGTTG
ATCGACAGAATCGTGGGTTATCACCCCTATCGTATCCTTGGCAGCGCTCT
GTTTTCCCGCCCCCATCGGCACCACCTTCCTGGTCCCAACACGGCCACGC
GTAGATCAGGGGTTCTGCTGCGGGCCGTGGGGGAGACGTTAGTGGTTGAC
TCGATGTTTGTTTTGCGCTTTTCCTGTCATCCGAGACTTTGGGAGATGGT
ATGTCGATTGGGGTATATTCGCTAATTTTCTCGGTGCTGTAGTTGCTCGC
GGAACTCCAGTACTACGCGGCAGAGGCCAGGGCGAACATGGTGACGGATG
GGGAAGAAGAATTGGACGCACAAAGGGCCGACCGCGATTCGTTAGAGTTG
GTAAACCACGCACTATCCGCCTAGGAAAGACTTGGACTTTCTATACCCGA
GGGTAGGGGCCCCGAATTGTTTGGAGTTTTACCATTTTGCCATGATATCG
TGCGAACGCACAACTGCCATTGCTGAGTTTTGGGTTTGATAGGACTACAA
AGCGGGCACGAACTGGAAAGTGTTGGTTAAGGAACATGCTTGCATGGCAT
CGATCGGCGTAGATCGAGGTCCTCCCGGTCGTTTTGTACTCAGTATATCT
TTAAATTTGAGACTTTTTCAACAGGCGTGAGATACGATACCCCAGATATT
GATCTTGACGTTGAATTTTCACCAAAGGCGGTGGTGGTGACATTCATCGC
GGCACTATTTCAAAGATTTAGCAGAGAGCTCCCTAAGTATGTCTTGCGTA
CTTGTCACCGTCGGTGTCCCGGAGAAATCCCAGGTTGGAATTTTTGTATA
TTTCGTCAAATATTCGAAATAACAAGTGTCCCCCGAAGGAAATTTCAACC
TTCAATTTGTTGACGGGTGCCCGTGGTGAATACAAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8049:443..6080+

>mRNA_Ecto-sp13_S_contig8049.19381.1 ID=mRNA_Ecto-sp13_S_contig8049.19381.1|Name=mRNA_Ecto-sp13_S_contig8049.19381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8049:443..6080+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACGCGTACTTCGCTGCCAGCGTGGTCGGCAGTGGCTTGGTGTCCA
CGAGCAAAGTTGGTGTCATGGGCAAGGCAGGGACGGCCTTCAAGCTAATT
TCTGGCGCAGTTCCCTGGTCGGCTGGATAGCTAGCTTCGCGGGCGCCGCA
TTGAAGGCTGGAGACTGCCTTATTCAAACTCGACGAGTGGTCAAGATCAC
CGATTTAGCGCCGGATGCGGTTGAATGTTCCAAGCTTGCGAGGAGTTTGG
CCCTACGACTCACCGACGGTCTTACGGACGACACCATCGCGACGTCGCGT
GCCAAAAACAAAAACACGCACAATGCAGTGGGTGTGGGCTGGGGTGCCGG
CGAGTCCACATCAAGACAGGGCTCTGGCGCCTTGGCAGACGGTGTGAGCG
AGGAAGACTTTATGGAGTGGTTTGTCAAAGAGTTTGCGAGCTGCGAGTCT
AGCAACTGCGGAGCAGCGGCAGAGATCCGGGAGGTGCAGGCTGGGAGGCG
GCTTGGCAAGCAACACCTCCACAAGCTGTTGACGGCAGTGGGTCAGGATT
GCCTTCAGGGCACGAACAACACCTGGGAAAAGGTCAACCGATTGGTGTTG
GTGATTCTGGCGGGGGCTGACGTTCGCCCCGCCGAAACCTCGAACGCCTC
AGAAGGAGGTTTCATCCAATCTCGTGTGTCGGCGCCATCCCACGATGGCG
TTGTTCAGCAGTTGGCGGCAGAACTAGAAGCATTGCAAGCTGCCATGAAA
TCCGACAAGGATAAGCACCACGCGGAGCTAGGAGCATTGAAATCTGACAA
GGAGAAGCACCATGCGGAGGTAGAAGCATTGAAGGGCAAGGTCGCCACCT
TCGAGAAACGCCTCTCGAAGTCTCACGGGGGTTTTGGGGGCTCGGTGGAT
GCCAGAGGAGGGTATATTCTCGCTCAGGAGCAAAAGACCGAGACCCAAGA
GGAATTGAATGAGAGGATGGAGTATCCAGGTCGCGCTGAAAATCGGCAAA
CCGTCACCCCCGGCGAGCTTCGGGTCACCCAGGCTCACGAAGAAGAAGTC
GGCAGAGAGACGGGCCACCTGGGGGCACGAGTTGCTGCACTTGAAGAAAA
CCGAGGGAAGAAAAAGGGGCTTCGACTTCGCTGGCGCGGCAATCGCTGA
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