mRNA_Ecto-sp13_S_contig8037.19365.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI) HSP 1 Score: 320 bits (821), Expect = 5.590e-107 Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 1
Query: 1 MMSTPRQLLLGACLIAGRTGAFHAPVASSLSHHTRSTLAVAGKCNSSSVRRRFRSAGFVMAAASGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSM 513
MMST RQLLLGACLIAGRTGAFH PVASSLS HTRSTLAVAGKCNS+SVRRRFRSAGF MAAASGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSM
Sbjct: 1 MMSTTRQLLLGACLIAGRTGAFHVPVASSLSQHTRSTLAVAGKCNSASVRRRFRSAGFAMAAASGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSM 171
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: A0A2M7G1L8_9BACT (Transcriptional regulator n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G1L8_9BACT) HSP 1 Score: 125 bits (315), Expect = 6.030e-32 Identity = 60/101 (59.41%), Postives = 77/101 (76.24%), Query Frame = 1
Query: 196 EMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSK 498
++Q +E+RLSEAL+P+HLEV+NESH HSGPA +SHFKVI VSD FEG+ +ARHR +NAL A+ + +HALS+Q TP++W A PSPPC GGSK
Sbjct: 2 QVQHDLESRLSEALAPLHLEVLNESHKHSGPAGDSHFKVIAVSDHFEGQNRVARHRQINALLADLIGQPIHALSLQLFTPSEWAARAEVALPSPPCRGGSK 102
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: A0A831ZLS3_9DELT (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A831ZLS3_9DELT) HSP 1 Score: 125 bits (313), Expect = 1.150e-31 Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 199 MQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKAD 504
M IEA+L EA +P HLEVIN+SH H G ++HFKVIVV+D F G+ LL+RHR VN L EE+ +HAL+I+ TPAQW A G + PSPPCMGGSK+D
Sbjct: 3 MHARIEAKLREAFTPAHLEVINQSHHHGGSGTQTHFKVIVVADTFAGERLLSRHRRVNNLLTEELTQGVHALTIEALTPAQWTARGGAIRPSPPCMGGSKSD 104
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: A0A8K1FC65_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC65_PYTOL) HSP 1 Score: 125 bits (314), Expect = 1.490e-31 Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 1
Query: 178 MAAASGEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPS 510
M+A G + + I +L+EA +P+HL V+NES+MH+ P E+HFKV+VVSD+F+GKPLL RHRMVNA+ EE+ +HALSIQGKTPAQWE + + V SP C+GG K DP+
Sbjct: 1 MSAEEGPIAQRIRNKLTEAFAPLHLAVMNESYMHNVPKGAETHFKVVVVSDKFDGKPLLQRHRMVNAVLEEELAQGVHALSIQGKTPAQWE-QNNTVQASPSCLGGMKNDPT 111
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: B3RW48_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RW48_TRIAD) HSP 1 Score: 123 bits (309), Expect = 4.550e-31 Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 193 GEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGS 495
G + +I +LSE L P+HL+VINES+MH+ P E+HFKVI+VSD F GK LL RHRMVN L AEE+ G +HALSIQ KT QWE H + SPPC+GGS
Sbjct: 2 GLTETSIHNKLSERLKPIHLDVINESNMHNVPKGSETHFKVIIVSDLFNGKSLLQRHRMVNELLAEELSGSVHALSIQAKTSQQWEDSNHHITKSPPCLGGS 103
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: UPI0014024C0E (bolA-like protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014024C0E) HSP 1 Score: 125 bits (313), Expect = 5.060e-31 Identity = 65/118 (55.08%), Postives = 84/118 (71.19%), Query Frame = 1
Query: 154 RFRSAGFVMAAASGEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKAD 504
R RS AA G +QE+I +L+ AL PVHL+V+NES MH+ P E+HFKV+VVS +FEG LLARHR+VN +E+ G +HALSIQ +TP QW + G +V PSPPC+GGSK +
Sbjct: 28 RSRSTMPATAAPGGPVQESIREKLTRALGPVHLDVVNESGMHAVPRGSETHFKVVVVSAQFEGVSLLARHRLVNEALRDELVGCVHALSIQARTPEQWGSSGGRVDPSPPCLGGSKRE 145
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: UPI001ABE9501 (bolA-like protein 1 n=3 Tax=Bufo TaxID=8383 RepID=UPI001ABE9501) HSP 1 Score: 123 bits (309), Expect = 1.450e-30 Identity = 66/106 (62.26%), Postives = 76/106 (71.70%), Query Frame = 1
Query: 199 MQETIEARLSEALSPVHLEVINESHMHS-GPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSM 513
++ +I A+LSE L P HLEV NESHMH+ P E+HFKV+VVSD F GK LL RHR+VN L EE+ G +HALSIQ KTP QWE E V SP CMGGSK DP M
Sbjct: 32 VETSIRAKLSENLQPCHLEVHNESHMHAVPPGSETHFKVVVVSDVFGGKSLLQRHRLVNDLLKEELAGPVHALSIQAKTPQQWE-ENPTVTQSPGCMGGSKHDPQM 136
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: A0A662WN87_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN87_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.620e-30 Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 187 ASGEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPS 510
A+G + I +L EA +P HL+VINESHMHS P E+HFKV+VV+DEFEGKPL+ RHR+VNA+ +E+ +HALSIQ KTPAQW A +V PSP C GG DP+
Sbjct: 7 AAGPVALRIREKLQEAFAPQHLDVINESHMHSVPKGSETHFKVVVVTDEFEGKPLIQRHRLVNAVLQQELDEGVHALSIQSKTPAQW-ASNSEVKPSPNCQGGMTRDPA 114
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: A0A1V9Z5Q5_9STRA (BolA-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Q5_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.540e-30 Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 193 GEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSK 498
G + I+ +L+ A P HLEV+NES+MH+ P E+HFKVIVVSD FEGKPL+ RHRMVNA+ EE+ G +HALSIQ KTPAQWEA V PSP C GG K
Sbjct: 22 GPIFSAIQTKLASAFVPTHLEVLNESYMHNVPKGSETHFKVIVVSDLFEGKPLIQRHRMVNAVLEEELNGGVHALSIQSKTPAQWEANS-TVRPSPTCQGGMK 123
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Match: A0A3M1WLH9_9GAMM (Transcriptional regulator BolA n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1WLH9_9GAMM) HSP 1 Score: 120 bits (301), Expect = 6.680e-30 Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 1
Query: 199 MQETIEARLSEALSPVHLEVINESHMHS-GPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKA 501
MQ+ IE +L E L+P HLEV+NESHMH+ P ESHFKV VVSD FEG+ L+ RHRMVNA+ A+E+ G++HAL++ TP +W AE + SPPC+GGSKA
Sbjct: 3 MQQNIENKLREGLAPDHLEVVNESHMHNVPPGSESHFKVTVVSDRFEGERLVGRHRMVNAILADELAGRIHALALHTYTPQEW-AERQQAPQSPPCLGGSKA 103 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8037.19365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8037.19365.1 >prot_Ecto-sp13_S_contig8037.19365.1 ID=prot_Ecto-sp13_S_contig8037.19365.1|Name=mRNA_Ecto-sp13_S_contig8037.19365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp MMSTPRQLLLGACLIAGRTGAFHAPVASSLSHHTRSTLAVAGKCNSSSVRback to top mRNA from alignment at Ecto-sp13_S_contig8037:615..3009- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8037.19365.1 ID=mRNA_Ecto-sp13_S_contig8037.19365.1|Name=mRNA_Ecto-sp13_S_contig8037.19365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8037:615..3009- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8037:615..3009- >mRNA_Ecto-sp13_S_contig8037.19365.1 ID=mRNA_Ecto-sp13_S_contig8037.19365.1|Name=mRNA_Ecto-sp13_S_contig8037.19365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8037:615..3009- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |