mRNA_Ecto-sp13_S_contig803.19357.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: D8LJV1_ECTSI (Similar to Cell growth regulator with RING finger domain 1 (Cell growth regulatory gene 19 protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV1_ECTSI) HSP 1 Score: 335 bits (860), Expect = 7.740e-115 Identity = 163/182 (89.56%), Postives = 169/182 (92.86%), Query Frame = 1
Query: 1 MSGGASAVGSWTKHWDPSSKQHFYYDPSTGQTTWGRPIPPPKSTESLEREGKGTLLEGIFLQQAKETAQHHDVRPRRRKRGGSKDRKNNDKRIFADDGQPQNVTIEDDEPRKDYISFAKEYFLTAPFRDTGGKQICVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVC 546
MSG A AVGSWTKHWDPSSKQHFYYDPSTGQTTWGR +PP KSTESL+REG+G LLEGIFLQQAKETAQHHDVRPRRRKRG SKDRKNN+ R+FADD PQN TIEDDEPRKDYISFAKEY+LTAPFRDTGGKQICVICQKRKASAVLFPCEHKCVCARCIE EGFGA R ASEREALCPVC
Sbjct: 1 MSGSAPAVGSWTKHWDPSSKQHFYYDPSTGQTTWGRSVPPEKSTESLKREGEGNLLEGIFLQQAKETAQHHDVRPRRRKRGVSKDRKNNN-RVFADDDLPQNETIEDDEPRKDYISFAKEYYLTAPFRDTGGKQICVICQKRKASAVLFPCEHKCVCARCIESEGFGAMRKASEREALCPVC 181
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: A0A6H5JCM1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM1_9PHAE) HSP 1 Score: 309 bits (791), Expect = 2.560e-104 Identity = 148/165 (89.70%), Postives = 157/165 (95.15%), Query Frame = 1
Query: 52 SSKQHFYYDPSTGQTTWGRPIPPPKSTESLEREGKGTLLEGIFLQQAKETAQHHDVRPRRRKRGGSKDRKNNDKRIFADDGQPQNVTIEDDEPRKDYISFAKEYFLTAPFRDTGGKQICVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVC 546
+S+QHFYYDPS+GQT WGRPIPP KST+SL+REG+GTLLEGIFLQQAKETAQHHDVRP RRKRGGSKDRKNN+ R+FADDGQ QN TIEDDEP KDYISFAKEY+LTAPFRDTGGKQ CVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVC
Sbjct: 18 TSQQHFYYDPSSGQTMWGRPIPPSKSTDSLKREGEGTLLEGIFLQQAKETAQHHDVRPWRRKRGGSKDRKNNNNRVFADDGQHQNETIEDDEPCKDYISFAKEYYLTAPFRDTGGKQTCVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVC 182
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: A0A7S2C0Y4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0Y4_9STRA) HSP 1 Score: 111 bits (277), Expect = 3.230e-25 Identity = 71/238 (29.83%), Postives = 110/238 (46.22%), Query Frame = 1
Query: 31 WTKHWDPSSKQHFYYDPSTGQTTWGRPI-------PPPKSTESLEREGKGTLLEGIFLQQAKETAQHHDVRPRRRKRGGSKDRKNNDKRIFADDGQPQNVTIEDDEP-RKDYISFAKEYFLTAPFRDTGGKQICVICQKRKASAVLFPCEHKCVCARCIEREGFGATRT----------ASEREALCPVCCQQVVFVAPCKGGGTEAELYWRWVDEIKPPLPKGFQRNFHNAAILLQI 690
WT+H D +S ++Y+ +TG T W P+ P P S + + + L Q + P R + K T E EP KDY S A+EY +R+ G Q C++C K ++ VLFPC HKC+C C + G + T E + CP+C +++ ++ K GTE E YW+WV+E+KPPLP+GF+ F +A + +++
Sbjct: 66 WTQHHDDASGHDYFYNDATGVTQWEPPVADALASVPQPHLPASRQPQPRAQAHPQPALCQP-------SLVPSAASRPAVAEPK-------------LTATSETIEPLNKDYASMAREYAQFKAYRNLDGDQFCLLCHKAPSTYVLFPCGHKCICEGCKKSNGVVDSATWQKAMANPNGGGELWSFCPLCNEEIKRIS--KHTGTEYEDYWKWVNEVKPPLPRGFKTKFKSAHVEVRV 281
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: A0A7S2S490_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S490_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.020e-23 Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 334 KDYISFAKEYFLTAPFRDTGGKQICVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREA---LCPVCCQQVVFVAPCKGGGTEAELYWRWVDEIKPPLPKGFQRNFHNAAILLQIQTEPD 705
KDY+S A+EY + P+R+ G Q C++C R + VLFPC HKC+C C + + F + A E CP+C +++ + P G TE YW WV E+KP LP GF+ ++ +L+ + P+
Sbjct: 95 KDYLSMAREYTQSEPYRNLSGAQPCLVCGTRASELVLFPCAHKCLCTACAKSQHFVESSRAKLEEGAWCFCPLCNEEIKRILPHTG--TEVADYWTWVHEVKPVLPGGFRSRLSQSSQMLEHGSIPN 219
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: A0A7S4HUM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUM7_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.160e-19 Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 334 KDYISFAKEYFLTAPFR--DTGGKQICVICQKRKASA------VLFPCEHKCVCARCIEREGFGATRTASEREALCPVCCQQVVFVAPCKGGGTEAELYWRWVDEIKPPLPKGFQRNF 663
KDY A++Y T P+R + GG CV+C++ A V FPCEH+CVC RC E G R A+ +CP+C +++ FVA + G+E E YW WV+E+KP +P F R F
Sbjct: 367 KDYPGLARQYKSTEPYRGNNPGGNPRCVLCRREGEDASVVLRRVFFPCEHRCVCNRCYREERMGPGRRAN----MCPLCGEEIKFVA--ERNGSERERYWDWVEEVKPFIPAAFVRKF 478
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: G4Z0K5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z0K5_PHYSP) HSP 1 Score: 78.6 bits (192), Expect = 5.760e-13 Identity = 43/122 (35.25%), Postives = 59/122 (48.36%), Query Frame = 1
Query: 334 KDYISFAKEYFLTAPF-RDTGGKQ----ICVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVCCQQVVFVAPCKGGGTEAELYWRWVDEIKPPLPKGFQRNFHNAAILL 684
K+Y + A + PF R+T GK +CV+C K ++V FPC+H CVC +CI+ + A + GTE E YW W+ E +PPLP F+R F NAA L
Sbjct: 111 KNYRALASSFKYLQPFCRNTDGKYPAKTVCVLCATGKPTSVFFPCQHLCVCNKCIDGNDMSPEFSMDLDRADIRLILSHT---------GTEEETYWNWLQEAEPPLPVEFKRGFKNAARRL 223
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: A0A1V9Z5I3_9STRA (RING-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5I3_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.850e-10 Identity = 45/151 (29.80%), Postives = 69/151 (45.70%), Query Frame = 1
Query: 337 DYISFAKEYFLTAPFRDTGGKQ-----ICVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREA---LCPVCCQQVVFVAPCKGGGTEAELYWRWVDEIKPPLPKGFQRNFHNAAILL------------QIQTEPDSHKTWDRP 729
DY+S + Y + P+ K +C++C+ K + V FPCEHKC+C +C++ T+ A + CPVC + V + + G E ELYW+ DE+ P LP+ F F L ++ T + T DRP
Sbjct: 113 DYMSDVEMYNMAKPYSRRPDKTFDPTAVCIVCKTNKITMVFFPCEHKCLCNKCLDYRP-PVTQIAGKGAQWPHACPVCYRDVSVMF--ENTGHETELYWKQ-DEV-PRLPRNFVATFKRTGSRLNTAPSMVFPTLDELSTHEEVDATDDRP 258
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: T0S352_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S352_SAPDV) HSP 1 Score: 65.1 bits (157), Expect = 1.050e-8 Identity = 41/124 (33.06%), Postives = 59/124 (47.58%), Query Frame = 1
Query: 337 DYISFAKEYFLTAPFRDTGGKQI-----CVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREA---LCPVCCQQVVFVAPCKGGGTEAELYWRWVDEIKPPLPKGFQRNFHNAAILL 684
DYI+ Y PF K C++C+ +K V FPCEHKCVC +C++ T+T + CPVC + V + + G E + YW+ +DE+ P LP F +F A L
Sbjct: 116 DYITDIDRYNSAKPFSRRSDKTFDPEARCIMCKTQKILMVFFPCEHKCVCNKCLDYHP-PVTKTIGKGAHWPHACPVCYRDVTVMF--ENTGFEVDHYWK-LDEV-PHLPNSFVTSFKRAGSRL 234
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Match: A0A067CQV5_SAPPC (RING-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CQV5_SAPPC) HSP 1 Score: 64.3 bits (155), Expect = 1.860e-8 Identity = 42/124 (33.87%), Postives = 57/124 (45.97%), Query Frame = 1
Query: 337 DYISFAKEYFLTAPFRDTGGKQI-----CVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREA---LCPVCCQQVVFVAPCKGGGTEAELYWRWVDEIKPPLPKGFQRNFHNAAILL 684
DYIS + Y PF K C++C+ K V FPCEHKCVC +C+E T+ A + CPVC + V + + G E + YW+ +DE+ P L F F A L
Sbjct: 110 DYISDVERYNSAKPFSRRPDKTFDPEARCIMCKTHKIHMVFFPCEHKCVCNKCLEYHP-PVTKIAGKGAHWPHACPVCYRDVTIMF--ENTGFEVDHYWK-LDEV-PHLSNSFVTTFKRAGSRL 228 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig803.19357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig803.19357.1 >prot_Ecto-sp13_S_contig803.19357.1 ID=prot_Ecto-sp13_S_contig803.19357.1|Name=mRNA_Ecto-sp13_S_contig803.19357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp MSGGASAVGSWTKHWDPSSKQHFYYDPSTGQTTWGRPIPPPKSTESLEREback to top mRNA from alignment at Ecto-sp13_S_contig803:12496..15742- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig803.19357.1 ID=mRNA_Ecto-sp13_S_contig803.19357.1|Name=mRNA_Ecto-sp13_S_contig803.19357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3247bp|location=Sequence derived from alignment at Ecto-sp13_S_contig803:12496..15742- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig803:12496..15742- >mRNA_Ecto-sp13_S_contig803.19357.1 ID=mRNA_Ecto-sp13_S_contig803.19357.1|Name=mRNA_Ecto-sp13_S_contig803.19357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig803:12496..15742- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |