mRNA_Ecto-sp13_S_contig8027.19348.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8027.19348.1
Unique NamemRNA_Ecto-sp13_S_contig8027.19348.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: D8LCA9_ECTSI (Abhydrolase domain containing 14B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA9_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.890e-40
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    1 EGSIDVAGTQVIFLGNLGSSPPSPTGEEAGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLPTRVT 222
            EGSIDV GTQV FLGNLGSSP SPTGEEAGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLPTRVT
Sbjct:   40 EGSIDVVGTQVSFLGNLGSSPSSPTGEEAGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLPTRVT 113          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: UPI0019A9AD6A (alpha/beta hydrolase n=1 Tax=Okeania sp. KiyG1 TaxID=2720165 RepID=UPI0019A9AD6A)

HSP 1 Score: 58.2 bits (139), Expect = 1.680e-9
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:  100 NVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            +VLLLHGA FSAQTWQ++GTL LLA  G+R  AV++P
Sbjct:   29 SVLLLHGASFSAQTWQEIGTLELLAMTGYRAVAVDIP 65          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: A0A6M0G9B3_9CYAN (Alpha/beta hydrolase (Fragment) n=1 Tax=Symploca sp. SIO2E6 TaxID=2607809 RepID=A0A6M0G9B3_9CYAN)

HSP 1 Score: 57.0 bits (136), Expect = 2.640e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   85 AGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            A   + VLLLHGA FSAQTWQ++GTL LLA  G++  AV+LP
Sbjct:   15 ATTAKTVLLLHGASFSAQTWQEIGTLQLLAQKGYQGIAVDLP 56          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: A0A7J8HMA3_ROUAE (Abhydrolase domain containing 14B n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8HMA3_ROUAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.950e-9
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 EGSIDVAGTQVIFLGNLGSSPPSPTGEEAGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            EG++ V G  + F          P G +A    +VLLLHG +FS++TWQ+LGTL  LA  G+R  A++LP
Sbjct:    8 EGTVQVQGQSLFFR------EARPAGGQAARF-SVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLP 70          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: A0A6P0I333_9CYAN (Alpha/beta hydrolase n=13 Tax=Okeania TaxID=1458928 RepID=A0A6P0I333_9CYAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:  100 NVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            +VLLLHGA FSAQTWQ++GTL LLA  G+R  AV++P
Sbjct:   29 SVLLLHGASFSAQTWQEIGTLELLAMTGYRAVAVDIP 65          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: A0A6M0GFV7_9CYAN (Alpha/beta hydrolase n=1 Tax=Symploca sp. SIO2E6 TaxID=2607809 RepID=A0A6M0GFV7_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.810e-8
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   85 AGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            A   + VLLLHGA FSAQTWQ++GTL LLA  G++  AV+LP
Sbjct:    7 ASTAKTVLLLHGASFSAQTWQEIGTLQLLAQKGYQGIAVDLP 48          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: G3TN06_LOXAF (Abhydrolase domain containing 14B n=2 Tax=Afrotheria TaxID=311790 RepID=G3TN06_LOXAF)

HSP 1 Score: 58.2 bits (139), Expect = 1.830e-8
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 EGSIDVAGTQVIFLGNLGSSPPSPTGEEAGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            EGSI V G  + F   L      P G +A    +VLLLHG +FS++TWQ+LGTL  LA  G+R  A++LP
Sbjct:    8 EGSIQVQGQNLFFREML------PGGGQASRF-SVLLLHGVRFSSETWQNLGTLHKLAQAGYRAVAIDLP 70          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: UPI0019F2D9ED (Alpha/beta hydrolase n=1 Tax=Oscillatoriales cyanobacterium LEGE 11467 TaxID=1828826 RepID=UPI0019F2D9ED)

HSP 1 Score: 57.8 bits (138), Expect = 2.320e-8
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   10 IDVAGTQVIFLGNLGSSPPSPTGEEAGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            ++++G ++ +L           G++A A   VL LHGA F AQTWQD+GTL LLA  G+R  AV+LP
Sbjct:   13 VNLSGAKIHYL---------EVGDKA-ATTTVLCLHGASFRAQTWQDIGTLKLLADGGYRAVAVDLP 69          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: A0A673TC52_SURSU (Abhydrolase domain containing 14B n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A673TC52_SURSU)

HSP 1 Score: 57.4 bits (137), Expect = 2.390e-8
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 EGSIDVAGTQVIFLGNLGSSPPSPTGEEAGAVRNVLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            EGSI V G  + F          P G +A    +VLLLHG +FS++TW +LGTL  LA NG+R  A++LP
Sbjct:    8 EGSIQVQGQSLFFR------EARPGGGQAARF-SVLLLHGIRFSSETWLNLGTLHRLAQNGYRAVAIDLP 70          
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Match: A0A7C9TXA5_9CYAN (Alpha/beta hydrolase n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TXA5_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-8
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   16 VAGTQVIFLGNLGSSPPSPTGEEAGAVRN--VLLLHGAKFSAQTWQDLGTLSLLATNGFRVAAVNLP 210
            VAG Q+ +L             EAG   N  +L LHGA FSAQTWQ++G+L LLA  G+R  AV+LP
Sbjct:   12 VAGKQIHYL-------------EAGQPANPSILFLHGASFSAQTWQEIGSLELLAIQGYRAVAVDLP 65          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8027.19348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCA9_ECTSI3.890e-4095.95Abhydrolase domain containing 14B n=2 Tax=Ectocarp... [more]
UPI0019A9AD6A1.680e-967.57alpha/beta hydrolase n=1 Tax=Okeania sp. KiyG1 Tax... [more]
A0A6M0G9B3_9CYAN2.640e-961.90Alpha/beta hydrolase (Fragment) n=1 Tax=Symploca s... [more]
A0A7J8HMA3_ROUAE7.950e-942.86Abhydrolase domain containing 14B n=1 Tax=Rousettu... [more]
A0A6P0I333_9CYAN1.770e-867.57Alpha/beta hydrolase n=13 Tax=Okeania TaxID=145892... [more]
A0A6M0GFV7_9CYAN1.810e-861.90Alpha/beta hydrolase n=1 Tax=Symploca sp. SIO2E6 T... [more]
G3TN06_LOXAF1.830e-847.14Abhydrolase domain containing 14B n=2 Tax=Afrother... [more]
UPI0019F2D9ED2.320e-844.78Alpha/beta hydrolase n=1 Tax=Oscillatoriales cyano... [more]
A0A673TC52_SURSU2.390e-845.71Abhydrolase domain containing 14B n=2 Tax=Laurasia... [more]
A0A7C9TXA5_9CYAN2.520e-847.76Alpha/beta hydrolase n=1 Tax=Oscillatoria sp. SIO1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8027contigEcto-sp13_S_contig8027:6754..6978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score141.0
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog2880.D8LCA9
Model size225
KEGG koko:K13706
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.positive regulation of transcription by RNA polymerase II
EggNOG OGs2QR0B@2759,COG0596@1
Cds size225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464075.6865354-CDS-Ecto-sp13_S_contig8027:6753..69781681464075.6865354-CDS-Ecto-sp13_S_contig8027:6753..6978Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8027 6754..6978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8027.19348.1prot_Ecto-sp13_S_contig8027.19348.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8027 6754..6978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8027.19348.1

>prot_Ecto-sp13_S_contig8027.19348.1 ID=prot_Ecto-sp13_S_contig8027.19348.1|Name=mRNA_Ecto-sp13_S_contig8027.19348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
EGSIDVAGTQVIFLGNLGSSPPSPTGEEAGAVRNVLLLHGAKFSAQTWQD
LGTLSLLATNGFRVAAVNLPTRVT*
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mRNA from alignment at Ecto-sp13_S_contig8027:6754..6978+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8027.19348.1 ID=mRNA_Ecto-sp13_S_contig8027.19348.1|Name=mRNA_Ecto-sp13_S_contig8027.19348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8027:6754..6978+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGGATCGATCGACGTGGCCGGCACCCAAGTCATCTTCTTGGGGAACCT CGGCAGCTCTCCTCCCAGCCCAACAGGGGAAGAGGCGGGCGCGGTGCGCA ACGTCCTGTTGCTGCACGGCGCCAAATTCTCGGCTCAGACGTGGCAGGAC TTGGGTACCCTCTCGCTCTTGGCTACCAACGGGTTCCGGGTGGCTGCTGT CAACTTGCCCACCCGGGTAACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8027:6754..6978+

>mRNA_Ecto-sp13_S_contig8027.19348.1 ID=mRNA_Ecto-sp13_S_contig8027.19348.1|Name=mRNA_Ecto-sp13_S_contig8027.19348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8027:6754..6978+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGGATCGATCGACGTGGCCGGCACCCAAGTCATCTTCTTGGGGAACCT
CGGCAGCTCTCCTCCCAGCCCAACAGGGGAAGAGGCGGGCGCGGTGCGCA
ACGTCCTGTTGCTGCACGGCGCCAAATTCTCGGCTCAGACGTGGCAGGAC
TTGGGTACCCTCTCGCTCTTGGCTACCAACGGGTTCCGGGTGGCTGCTGT
CAACTTGCCCACCCGGGTAACGTGA
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