mRNA_Ecto-sp13_S_contig8006.19326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8006.19326.1
Unique NamemRNA_Ecto-sp13_S_contig8006.19326.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 719 bits (1857), Expect = 2.300e-237
Identity = 425/514 (82.68%), Postives = 440/514 (85.60%), Query Frame = 1 
Query:    1 LGVGEVEGGEGPAVLHPRPIVGTFSKPLTLPPAAAATPDDVPSPRDPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATRVGGDGASGGCMESGATPPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXXXDAVQAAAGRAHSLVLLSDGRVIGFGSDEFGALGPAEPP-AAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRGRWVASVSAGGEQSFALAVGPEXXXXXXXXXXXXXXXXXLPSLTGDAASVAGGLGRPDEKATVAEGMSVDSDSAAEQKFTPAPAVAESETRREGGGEDADGGPASLAGAAG---PLVRRGSEALSLRRRFSLPPTLRMWTAGEFLQLIRRAEEAAVTGDSSDVEGEASRGGAEEAGVLEAVRQTFASPSVLSACFNIEAPAEARNGNLGRTQTEEGRGQGTVFPRVDAAGLEAVYAGLAGLGPRVVETLWSSIEEVRSRYR--QRCPDTGCTLFVPIPSA 1524
            LGVGE+EGGEGPAVLHPRPIVGTFSKPLTLPPAA ATPDDVPSPRD N           XXXXXXXXXXXXXXXXXPA+RVGGD A+GG M+SGATPPAFLAARAACGQSHTVLVSTAG+AWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXX   AVQAAAGRAHSLVLLSDGRV+GFGSDEFGALGPAEPP AAAAAAVGDSMEVDTAT R CYHWKPTVIEAL GRWVASVSAGGEQSFA+AVGP                  LPS  GDAASV GGLGRPDEKA VA  MSVD DSAAE+KFTPAPAVAESE RREGGGEDAD GP SLAGAAG   PLVRRGSEALSLRRRFSLPPTLRMWT GEFLQLIR+AE AAVTG+SSDVEGEASRGGAEEA VLEAVRQTFASPSVLSACFNIEAPAEAR+GNLGRTQT EGRGQGT FPRVDAAGLEAVYAGLAGLGPRVV+TLWSSIEE  +  R  Q+ P T        PS+
Sbjct:  547 LGVGELEGGEGPAVLHPRPIVGTFSKPLTLPPAAVATPDDVPSPRDSNPTGAGSATPARXXXXXXXXXXXXXXXXXPASRVGGDSANGGRMKSGATPPAFLAARAACGQSHTVLVSTAGEAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXAVGAVQAAAGRAHSLVLLSDGRVVGFGSDEFGALGPAEPPVAAAAAAVGDSMEVDTATHRSCYHWKPTVIEALSGRWVASVSAGGEQSFAIAVGPAQPPAVGAGAGTAHPPPPLPSSPGDAASVVGGLGRPDEKAPVAAAMSVDGDSAAERKFTPAPAVAESEARREGGGEDADRGPGSLAGAAGAAGPLVRRGSEALSLRRRFSLPPTLRMWTVGEFLQLIRKAEAAAVTGNSSDVEGEASRGGAEEAAVLEAVRQTFASPSVLSACFNIEAPAEARHGNLGRTQTGEGRGQGTAFPRVDAAGLEAVYAGLAGLGPRVVDTLWSSIEEGMAAVREAQQSPLTSSKSRCSRPSS 1060
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 702 bits (1812), Expect = 2.250e-236
Identity = 415/483 (85.92%), Postives = 422/483 (87.37%), Query Frame = 1 
Query:    1 LGVGEVEGGEGPAVLHPRPIVGTFSKPLTLPPAAAATPDDVPSPRDPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXPA------TRVGGDGASGGCMESGATPPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXXXDAVQAAAGRAHSLVLLSDGRVIGFGSDEFGALGPAEPPAAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRGRWVASVSAGGEQSFALAVGPEXXXXXXXXXXXXXXXXXLPSLTGDAASVAGGLGRPDEKATVAEGMSVDSDSAAEQKFTPAPAVAESETRREGGGEDADGGPASLAGAAGPLVRRGSEALSLRRRFSLPPTLRMWTAGEFLQLIRRAEEAAVTGDSSDVEGEASRGGAEEAGVLEAVRQTFASPSVLSACFNIEAPAEARNGNLGRTQTEEGRGQGTVFPRVDAAGLEAVYAGLAGLGPRVVE 1431
            LGVGEVEGGE PAVLHPRPIVGTFSKPLTL PAAAA PDD PSPRD  XXXXXXXXXXXXXXXXXXXXXXXXXXXX        +RVGGDGASGGCM+SGATPPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDP+IVGETSTPVRVPLEGEG        DAVQAAAGRAHSLVLLSDGRV+GFGSDEFGALGP EPPAAAAAAVGDSMEVDTATPR CYHWKPTVIEAL GRWVASVSAGGEQSF LAVGP                  LPS TGDAASVAG +G PD+K TVA  MSVDSDSAAEQKFTPAPA  ESE RREGGGEDA GGP SLAGAAGPLVRRGSEALSLRRRFSLPPTLRMWTAGEFLQLIRRAE AAV GDSSDVEGEASRGGAEEA VLEAVRQTFASPSVLSACFNIEAPAEAR+GNLGR QT EGRGQGT FPRVDAAGLEAVYAGLAGLGPRVVE
Sbjct:  119 LGVGEVEGGERPAVLHPRPIVGTFSKPLTLRPAAAAAPDDAPSPRDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVGGDGASGGCMKSGATPPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPNIVGETSTPVRVPLEGEGGGGGAVEADAVQAAAGRAHSLVLLSDGRVVGFGSDEFGALGPTEPPAAAAAAVGDSMEVDTATPRSCYHWKPTVIEALSGRWVASVSAGGEQSFVLAVGPAPPPAVGAGAGTAHPAPPLPSFTGDAASVAGAMGWPDDKTTVAAAMSVDSDSAAEQKFTPAPAATESEARREGGGEDAGGGPGSLAGAAGPLVRRGSEALSLRRRFSLPPTLRMWTAGEFLQLIRRAEAAAVAGDSSDVEGEASRGGAEEAAVLEAVRQTFASPSVLSACFNIEAPAEARHGNLGRKQTGEGRGQGTAFPRVDAAGLEAVYAGLAGLGPRVVE 601
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: W7TN24_9STRA (Ubiquitin protein ligase e3a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN24_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.820e-16
Identity = 69/229 (30.13%), Postives = 109/229 (47.60%), Query Frame = 3 
Query: 1650 LLKYWQGSTFSRDVGESPDTGKDTAMERICKTVLGLKGHARWWLMRSVKEDYSAELFSSRLVKPMVEHLSIWLKRVGQRRPYYPTAALLLKWLHSINE---LEGTRK---------------IPYEDFFSDYISNMHAEKVVQDLLTWKDQQPSARIKR--FFLCEHPFLISTDLKKFLLKAEAQVEQDKAARASGHYVPLVGVVIKPFLVLTVNRTHLLQETLAQASK 2276
            LL YWQ       +  +    KDT + ++C+TV+ L    R  L+R V+ DY   LF++RL++P+  H+   L+    +    P   + + +L   +E    E T                 I  + F +  +S +  E ++ DL TWK  +    + R  F  C +PFL+S + K+ LL  EA +EQ +AA+         G  + P+LVL V+R HLL  TLAQ  +
Sbjct:  870 LLAYWQ-----CPLNSNTSLSKDTFL-KLCETVVSLPLSGRLLLLRFVRADYPPHLFATRLLRPLHTHIEYHLRINFGKGRAVPILVVTMSYLFMASEGGSWETTSTXXXXXXXXXXQCGSLISPDQFANTAVSALPDESLLHDLRTWKAVKEEKNMNRNVFTFCRYPFLLSAEAKRRLLYGEAVLEQQQAAQKDMMRQMFQGGPVMPYLVLRVDRNHLLNSTLAQVGQ 1092
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: A0A7S3YFW2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFW2_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 1.330e-8
Identity = 33/98 (33.67%), Postives = 61/98 (62.24%), Query Frame = 3 
Query: 1767 ARWWLMRSVKEDYSAELFSSRLVKPMVEHLSIWLKRVGQRRPYYPTAALLLKWLHSINELEGTRKIPYEDFFSDYISNMHAEKVVQDLLTWKDQQPSA 2060
            AR  L+R+  ED    LF++RL++P+ +HL+  L     R    P+ AL+L+WLH++NE++  R +P+  F+++ +S +  + ++QD   WK  + +A
Sbjct:    9 ARAALLRAAGEDAPPHLFAARLLRPLQDHLAHHLGVDHGRGRAVPSLALVLRWLHTLNEVK--RLVPHTAFYNEAVSALPDQYLLQDFAGWKQARLAA 104
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: UPI0019052934 (regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=2 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019052934)

HSP 1 Score: 63.2 bits (152), Expect = 1.380e-6
Identity = 49/161 (30.43%), Postives = 71/161 (44.10%), Query Frame = 1 
Query:  271 MESGATPPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXXXDAVQAAAGRAHSLVLLSDGRVIGFGSDEFGALGPAEPPAAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRGRWVASVSAGGEQSFALA 753
            ++ GA+  +     AACG++HT+L+  AGD W  G N  GQ G  P     +   V  P               V A+AG   S+VL   G+V  FGS E G LG            G+ +     T     H +P  I+A  G+ +  +++G + S ALA
Sbjct:  119 VQCGASKNSIKFINAACGRAHTLLIDDAGDLWTAGINTLGQCGHPPRPEVTSFKKVSGPW-----LKTTPPDKVVAASAGITFSIVLTESGKVYSFGSAEMGQLGNGR--------TGEHISTGNKTAFDVEH-EPIRIKAFEGKKIVQIASGQQHSIALA 265
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: A0A7R9YGS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGS3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.200e-6
Identity = 55/217 (25.35%), Postives = 95/217 (43.78%), Query Frame = 3 
Query: 1650 LLKYWQGSTFSRDVGESPDTGKDTAMERICKTVLGLKGHARWWLMRSVKEDYSAELFSSRLVKPMVEHLSIWLKRVGQRRPYYPTAALLLKWLHSINELEGTRKIPYEDFFSDYISNMHAEKVVQDLLTWKDQQPSARIKRFFLCEHPFLISTDLKKFLLKAEAQVEQDKAARA-----------SGHYVPLVGVVIKPFLVLTVNRTHLLQETLAQ 2267
            LL  W     S          K  +  R+ K V G+    +  L R + E    ++   RL+ P+  HLS  L+    R    P  A +   L++ +E  G    P + F++D  + +    ++ DL +  +     + +RFFL  +P LI  + K  +++ EA+++Q +  +             G  +P +     PFLVLTV+R+ L+Q  L Q
Sbjct:  690 LLLLWMLPINSERSLTGAGPNKKGSFVRLLKLVAGMTQEGKVVLGRFICECVPEDVLYDRLLAPIHVHLSYALQS-NTRGHTLPVLATVAHDLYTFSEAVGHMIAP-DKFYNDGFTKLDVRILLDDLYSLANTSEEVKRRRFFLNRYPELIPAETKLIMMQLEAKIQQARIQQQVMMNQMMSQVLGGQRLPEL-----PFLVLTVDRSDLVQTALTQ 899
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: A0A0C2WDX0_9AGAM (PHD-type domain-containing protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2WDX0_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 9.850e-6
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 1 
Query:  313 AACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXXXDAVQAAAGRAHSLVLLSDGRVIGFGSDEFGALG---PAEPPAAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRGRWVASVSAGGEQS 741
            AA G++H++LV++ G  W+ G N SGQ G  P       +P R P+EGE           +QAAAG   S+VL + G+V  FGS E G LG     E    +  AV D+  +            P +++ L GR +  +++G + S
Sbjct:  122 AATGRAHSLLVASDGSVWSAGLNTSGQCGHSPS---PEVSPFR-PIEGE---WRGSGDRVIQAAAGNTFSIVLTASGKVYAFGSGEKGQLGNGRTGEHIVTSGRAVFDTEHI------------PLLVKGLEGRHIIQIASGLQHS 248
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: A0A4S4KB07_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KB07_9AGAM)

HSP 1 Score: 58.2 bits (139), Expect = 3.680e-5
Identity = 45/154 (29.22%), Postives = 69/154 (44.81%), Query Frame = 1 
Query:  289 PPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXXXDAVQAAAGRAHSLVLLSDGRVIGFGSDEFGALGPAEPPAAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRGRWVASVSAGGEQSFAL 750
            P   +   AA G++HT+LV++ GD W  G N  GQ G  P     + T +R P  GE           V+  AG   S++L   G+V   GS E G LG          A G+ +  D        + +P +++ L G+ +  VS G + + A+
Sbjct:   49 PAGVVFVHAAVGRAHTLLVASNGDVWTAGANTLGQCGHSPCPEVPSFTLLRGPWPGE------VKEKIVKVGAGVNFSILLAESGKVYALGSGEHGQLGNGR--TGEHIATGNKIMFDV-------YSEPVLVKGLEGKVITHVSCGHQHTIAM 187
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: G4TYF7_SERID (Uncharacterized protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TYF7_SERID)

HSP 1 Score: 56.6 bits (135), Expect = 4.800e-5
Identity = 43/153 (28.10%), Postives = 68/153 (44.44%), Query Frame = 1 
Query:  292 PAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXXXDAVQAAAGRAHSLVLLSDGRVIGFGSDEFGALGPAEPPAAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRGRWVASVSAGGEQSFAL 750
            P      AA G++HT+LV++ G  W+ G N SGQ G +P         +    + +G          +QA+AG   SLVL + G+V  FGS E G LG            G+ +           H +P +++ L  R +  +++G + S  L
Sbjct:  112 PGVKFVHAATGRAHTLLVASDGQVWSAGINTSGQCGHEPSAEVSPFKAIEGDWKAQGDK-------VIQASAGNTFSLVLTASGKVYAFGSGEKGQLGNGR--------TGEHIITSGRAVFDTEH-EPLLVKGLADRKIVQIASGLQHSLVL 248
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BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Match: A4RS67_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RS67_OSTLU)

HSP 1 Score: 57.0 bits (136), Expect = 6.170e-5
Identity = 53/150 (35.33%), Postives = 70/150 (46.67%), Query Frame = 1 
Query:  316 ACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVGETSTPVRVPLEGEGXXXXXXXXDAVQAAAGRAHSLVLLSDGRVIGFGSDEFGALGPAEPPAAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRG--RWVASVSAGGEQSFALAVG 759
            A G +HT+ V  AG  +ACGR RSGQLG+     G     +   L G            V A AG AHS+ + SDG V  +G   +G LG  +   AAAA   + +      P PC      ++E+L      VAS+SAGG  S  +  G
Sbjct:   62 ATGFNHTLAVDRAGRLFACGRGRSGQLGLGTFRDGAPFARIAA-LRG---------MRVVSAVAGGAHSICITSDGNVWSWGDCRYGQLGLGDLTFAAAAGWNNGV------PWPC------LVESLNDMDEPVASMSAGGAHSIFVTTG 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8006.19326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K2Y9_9PHAE2.300e-23782.68HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWC7_ECTSI2.250e-23685.92HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
W7TN24_9STRA3.820e-1630.13Ubiquitin protein ligase e3a n=2 Tax=Monodopsidace... [more]
A0A7S3YFW2_HETAK1.330e-833.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00190529341.380e-630.43regulator of chromosome condensation 1/beta-lactam... [more]
A0A7R9YGS3_9STRA3.200e-625.35Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A0C2WDX0_9AGAM9.850e-632.88PHD-type domain-containing protein n=1 Tax=Serendi... [more]
A0A4S4KB07_9AGAM3.680e-529.22Uncharacterized protein (Fragment) n=1 Tax=Phellin... [more]
G4TYF7_SERID4.800e-528.10Uncharacterized protein n=1 Tax=Serendipita indica... [more]
A4RS67_OSTLU6.170e-535.33Uncharacterized protein (Fragment) n=1 Tax=Ostreoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8006contigEcto-sp13_S_contig8006:252..6823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score625.2
Seed ortholog evalue2.9e-176
Seed eggNOG ortholog2880.D7FWC7
Model size2276
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
Ec32 ortholog descriptionHECT
Ec32 orthologEc-25_000510.2
EC2.3.2.26
Cds size1599
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8006.19326.1prot_Ecto-sp13_S_contig8006.19326.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8006 3372..6553 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.4355974-UTR-Ecto-sp13_S_contig8006:251..4071681464073.4355974-UTR-Ecto-sp13_S_contig8006:251..407Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8006 252..407 -
1681464073.4484417-UTR-Ecto-sp13_S_contig8006:1404..15631681464073.4484417-UTR-Ecto-sp13_S_contig8006:1404..1563Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8006 1405..1563 -
1681464073.458989-UTR-Ecto-sp13_S_contig8006:2154..21931681464073.458989-UTR-Ecto-sp13_S_contig8006:2154..2193Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8006 2155..2193 -
1681464073.4712405-UTR-Ecto-sp13_S_contig8006:3318..33711681464073.4712405-UTR-Ecto-sp13_S_contig8006:3318..3371Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8006 3319..3371 -
1681464073.5332332-UTR-Ecto-sp13_S_contig8006:6553..68231681464073.5332332-UTR-Ecto-sp13_S_contig8006:6553..6823Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8006 6554..6823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.483061-CDS-Ecto-sp13_S_contig8006:3371..34511681464073.483061-CDS-Ecto-sp13_S_contig8006:3371..3451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8006 3372..3451 -
1681464073.4926267-CDS-Ecto-sp13_S_contig8006:4124..43811681464073.4926267-CDS-Ecto-sp13_S_contig8006:4124..4381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8006 4125..4381 -
1681464073.5042949-CDS-Ecto-sp13_S_contig8006:4481..45231681464073.5042949-CDS-Ecto-sp13_S_contig8006:4481..4523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8006 4482..4523 -
1681464073.5140123-CDS-Ecto-sp13_S_contig8006:4796..50591681464073.5140123-CDS-Ecto-sp13_S_contig8006:4796..5059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8006 4797..5059 -
1681464073.5233402-CDS-Ecto-sp13_S_contig8006:5596..65531681464073.5233402-CDS-Ecto-sp13_S_contig8006:5596..6553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8006 5597..6553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8006.19326.1

>prot_Ecto-sp13_S_contig8006.19326.1 ID=prot_Ecto-sp13_S_contig8006.19326.1|Name=mRNA_Ecto-sp13_S_contig8006.19326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=533bp
MESGATPPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPDIVG
ETSTPVRVPLEGEGGGGGAAAADAVQAAAGRAHSLVLLSDGRVIGFGSDE
FGALGPAEPPAAAAAAVGDSMEVDTATPRPCYHWKPTVIEALRGRWVASV
SAGGEQSFALAVGPEPPPAVGVGAGTAHPPPPLPSLTGDAASVAGGLGRP
DEKATVAEGMSVDSDSAAEQKFTPAPAVAESETRREGGGEDADGGPASLA
GAAGPLVRRGSEALSLRRRFSLPPTLRMWTAGEFLQLIRRAEEAAVTGDS
SDVEGEASRGGAEEAGVLEAVRQTFASPSVLSACFNIEAPAEARNGNLGR
TQTEEGRGQGTVFPRVDAAGLEAVYAGLAGLGPRVVETLWSSIEEVRSRY
RQRCPDTGCTLFVPIPSAAFSEWQRSGRRNNPLRPPRNLGSFVHLRPPPC
RASRPPEPRSSSSTGRGPPSRETWGSLRTRARTRPWRGSARRCSGSRGTP
AGGSCAASKRTILRNSSPPDWSSPWSSTFPSG*
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mRNA from alignment at Ecto-sp13_S_contig8006:252..6823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8006.19326.1 ID=mRNA_Ecto-sp13_S_contig8006.19326.1|Name=mRNA_Ecto-sp13_S_contig8006.19326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6572bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8006:252..6823- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGGGGTAGGCGAGGTAGAAGGTGGCGAAGGGCCAGCAGTCCTGCACCC
CCGACCGATCGTCGGAACGTTCTCCAAGCCTCTCACCTTGCCCCCCGCCG
CGGCGGCTACCCCCGACGACGTGCCCTCGCCCCGAGACCCAAACCCCACG
GGAGCCGGCAGCGCTACCCCCACTAGGCCCGCTCCCGCCGGCGCGGAAGG
GGCCACCGCCGCTGCCGCCGCCGCTGCTCCCGCCACCAGGGTCGGTGGTG
ATGGCGCTAGCGGCGGCTGCATGGAGAGCGGGGCGACCCCGCCCGCCTTT
CTGGCCGCCCGCGCGGCCTGCGGGCAGAGCCACACCGTGCTCGTCTCGAC
GGCGGGGGACGCGTGGGCCTGCGGCCGCAACCGGTCGGGCCAGCTGGGCG
TCGATCCCGACATTGTCGGGGAGACCAGCACGCCGGTGAGGGTCCCGCTA
GAGGGGGAAGGGGGAGGGGGAGGAGCGGCGGCGGCAGACGCCGTCCAAGC
GGCCGCGGGCAGGGCGCACTCCCTGGTGCTGCTATCCGACGGGAGGGTGA
TCGGCTTCGGGAGCGACGAGTTCGGGGCGCTCGGACCTGCTGAGCCTCCC
GCCGCCGCCGCCGCCGCCGTTGGCGACAGCATGGAGGTGGACACCGCGAC
GCCCCGCCCTTGCTACCATTGGAAGCCCACGGTCATCGAGGCACTCCGCG
GGCGGTGGGTAGCCTCGGTGTCTGCCGGCGGCGAGCAAAGCTTCGCGTTA
GCGGTGGGCCCGGAGCCGCCGCCGGCCGTGGGGGTGGGGGCGGGGACAGC
CCACCCCCCGCCCCCGTTGCCTTCTTTAACGGGTGACGCCGCTTCTGTCG
CTGGGGGCTTGGGACGGCCAGACGAAAAGGCCACCGTGGCGGAGGGCATG
TCAGTAGATAGCGACTCGGCAGCGGAGCAGAAGTTCACGCCAGCACCAGC
GGTCGCCGAGAGCGAGACACGCCGGGAAGGAGGCGGAGAAGATGCGGATG
GGGGGCCGGCAAGCCTCGCCGGGGCTGCCGGCCCGCTCGTGAGACGGGGC
TCCGAGGCGCTGTCTCTTCGGCGGAGGTTCTCGCTCCCTCCGACGCTGAG
GATGTGGACGGCGGGCGAGTTCCTTCAGCTGATCAGGAGGGCAGAGGAAG
CCGCGGTGACCGGGGACAGCTCGGACGTGGAAGGGGAGGCCAGCCGCGGG
GGCGCGGAGGAAGCGGGAGTGCTGGAGGTGGGTGACGTTTTTCTCGGAAT
GAAAGGCCGATGCTCGTTCCGCTGAAAAGTTTTTGTAGGAAATGCAATGG
TTTAGAACACCAGTCAGTCGCGTCTGGAACACTGTTGAGCGCCAGGTGCG
GGATCGACCGCATTTTGTGCTTGCTCGATCGGGTGTTTACTCTTGTGGGT
GCTGTAGCGAGCTCGACGGGGTAGTGGCGGGCGGGGAAGAACGTTCGACG
GAGGGCGTAGGAACGCGTTCTCGAACCCTGCTGGTCTGGCGGGTTAGATG
CTCCTTTTTGTCCAACCAGGGCCGACCTCTTTGCGGCACAATTTTCCCTG
TTGCACCTGTCCACCACCTTCCATCGTCCTTTCTACTCCGAACGCCCGTT
GCCTCGCTGAAAGCCGGCTGCTCACCCCTGCAAGACTGTGATGCTGATGA
ACTGCTGTTGACAACGAATTTGATCCCATCTTCTTGTGGGATGGGAGTTT
TGTATCCCTGCAAGGCCGCTTACCGCTGGCTGCCCGAAACTCCTCCGGCC
GTTCTTTGAAGCAGGCGGTGCGACAAACTTTCGCCTCGCCATCGGTACTG
AGCGCGTGCTTCAACATCGAAGCACCGGCAGAGGCCCGAAACGGCAACCT
GGGGAGGACGCAGACGGAGGAAGGGAGGGGACAGGGGACGGTGTTCCCCC
GGGTGGATGCGGCGGGGTTGGAAGCTGTGTACGCGGGGCTAGCGGGTCTG
GGGCCGAGGGTGGTGGAAACTCTGTGGTCTTCGATCGAGGAGGTGCGATC
ACGCTACCGGCAGCGGTGTCCCGACACGTTGCACATACCCCTCCGCTTCG
AGATAGCGCCTATGGTTTTTGCCTTGTTCTTCTAAGGTATGCCACTTACC
CCTCGATGTATTCGTTTCCTGGCCCCTGTTCCGCGCGCTCTTCATCTACA
CCTCCTTCACCGCACGAACTTTTTCCTCCCTGCGCTTGCCCACTCCTCCG
CTTCCAGCATGCTAGCATCAACACACGCGCGCTCCCCTTTTTATGCTTTG
GGTTGGGCGCATGCCCCCAGGTCACCCCCTCCCGCTCCGGGGAACGGCAG
CGGCTGCACTCTATTTGTCCCGATTCCTTCAGCCGCGTTTTCGTCCATCC
GTGATCAATCCTGTTGAAAAAATGCTGCGTCCTCTCGAGGACGCGCGATC
AATGGTCTAACAGCCAACGCTTGCCCAACGTGAATACCCCAGGGAATGGC
AGCGGTCAGGGAGGCGCAACAATCCCCTTCGGCCTCCTCGAAATCTCGGT
TCTTTCGTCCATCTTCGACCCCCGCCGTGCCGGGCCTCGAGGCCGCCGGA
GCCTCGTTCCTCCTCAAGTACTGGCAGGGGTCCACCTTCTCGCGAGACGT
GGGGGAGTCTCCGGACACGGGCAAGGACACGGCCATGGAGAGGATCTGCA
AGACGGTGCTCGGGCTCAAGGGGCACGCCCGCTGGTGGCTCATGCGCAGG
TGGGCGGCGCGCGAGGCGTTGCCGGCTTGGTGGGTCATGGCACTGACTGC
TGTGTTGCTCCTTCCTTGGTCGAGAATAAGTCCTCCGGTGTTTTCTTTGT
GTTTTGAATAGCAACTTCTCCTGTAAGCGTGGTACCGCTCTGTTGGAAAA
TGCTAGGATCGCTCTGATACACACGTTAATGTCCAAATGGTCCTTACATT
TCCAAACATAGTGGTGTACGATAAGCAAGAACAGGAACGGGGGCTGGAAA
AGTTCTTCCAGTGGTATCCGTCTCCGGATGGGTGGGTTCTCCTTCGTGGA
CCTTGGCCGGGTTTTGTCGGCGAGGGCGGGTGCAGCTTCGACGTCGCTTT
ACCTCGACTAAGCTCCACTCGCTTTGATTTATTTTCGCTTTTCGTTTGAA
CCATGTGGGGGGTGGCCGGCCTTGTGATCGCTTTAGGCGCCCGCGTCAGT
TCGACCGGTACGGAGATGTAAAAAGGTACTGAGCAGAGGCCGGAACGATT
TTTTTCTGTGAAGAGACAACACGAACACCACCACCACTACCAACAACAAC
AACAACAACAACAACAATAACAATAACAACAACACTGTATGTATCTCCGG
TGCGTCCGTTTACTTTTTACCCATTCCGTGTGCGCGGTGTGTCTCCCCTG
GCATGGCGTTCACCCACATTAGCGTCAAAGAGGACTATTCTGCGGAACTC
TTCTCCTCCCGACTGGTCAAGCCCATGGTCGAGCACCTTTCCATCTGGCT
GAAGAGAGTGGGACAGAGGAGACCCTACTACCCTACCGCGGCTTTGCTAC
TCAAGGTAAGGCACACGTACACGACGCCGGCTGTGACTTAGTCGCGCCAG
CGGAAACGCAGTGCAATTCGTCGTTGCAATCCTGAAAGAATCCTTACGAG
TTTCCGCTGCGGCGGTAGAGTTCCTGGTGTCTTAGTAGACGATGGACAGA
CAGAGCGGCGGGGATGTGAGCGAAGCGTTCGCATTGTGCAAGAATTCTTG
TTGCAGCTGTTGGTGTGTGGGATGTATGAGAAGATCACCGGGCTGTCAAA
CTATGTTTGGGGGGCGGGTTGCGTGGTCTGACATGGCAAGAGACCGCCAT
CCTCGCATCCATGTTACCGTCCACCGTCAGTTGCATAAGATGTCACACCG
GTTGGAATGGGTACCTGAGCTCGATTACTCCCGGCAGCACAAGCAGCTAC
GGTACCGAAAATGGCCGCGTTGGAACCTTCCCGTCAAGAGCTTTCTAGTA
GTTTTTTTTTTTTGTTGCACCCTCGTCGTGGTGGAGAATGCGAGCTTTGA
ATGTCGGTCCAAGCGGGTGTGGTATCTTTCGCCATGTCACCTACGGTATC
TCGCGGAAGCAACAGTACTCATGAGGTCATGTGTGCTTGAATTGTTGTGG
ATGGGCTATCTGGTTGTCCTCGGCTCTCCAATCTCATACTGTTGCTCTAT
TCCCTCTGACGAGCTGTGTTTGGTTTCTCCCGTCATAGTTGTCGCCACGC
CCGCCCTGTGCGCGTCTCGACCCGCCCGACTACACCCAGAGCATGCTTAA
CGACCGCGCCTCTGCTTCTTTCCGCACCCCTTGGGCTGCGCCCCCGCTCT
CTAGCACGTGCGTGCTTTGCAGATGAAACACTGCTTTCCAGCATGGCCTT
GTGACGACTGCTTCCTCCAAGTCGGTACATGTATCGTGCCATTTGTGTTC
GACACCGATTCATTGTCTCCGCCCCTTCCAACAATGAAACCATGGCATGG
TGCCATTGTCTCCGCCCCTTCCAACAATGAAACCATGGCATGGTGCCAAA
CGCATTCTCTCCGATCGGATTTCTGGAGAGTTTTTTTCTCTCTCCCAAGC
GACAATTGACGTAGACGTTTCTTTTTCGCGTGTTGCCGCCTGCCACTCCA
CCCTACGCTACCTGACGCCACGCTACGAAGTGGCTGCATTCCATCAACGA
ACTCGAGGGTACGCGGAAGGTGAGACCGGGAGTCCGGACCGTTGCGCGGA
TTGTTCTACAGGAACAAGCCGCCGTCGTCGTCTCCGGTTGCAGCCAGCTG
TGGAATGGTCTTTCCGTGTTCTCACGTGTGTGGTTGTCGAAAACCGCGTT
TCTGTGTTGCTGAAACGGGTTGTGGTTTTGTTCCATGGTGTTCCGGAATT
GCCTGTTTTCTATTTCGTCAGTCCCTTAGGATTGTTTTTGGTTGAAGATC
ATTCCTGGAATGATCGGTGCATCGCCTTTCCACGGGAGCATATCCGGACG
CGGAACGCCTCCGTGCGGGTTATCCACGGAGATTTCCGCAGGTCGTCCAT
CACAAGACCAATGGATTCAGGCGACAGCTTCGTCGCCCAACATGACCCGT
TGATGGACGGATTTGGGATGACAGAGTCGTATCGCATTCTCGGTATCCTA
CTCCTCCTGCTCGTTCCTCGCTCAATCAAAAGTACTTAATTTTTGACACG
GCAATAGTAACGATTTGTGCTCTTGAACGTTTCGAAAAAGCAACTGAAGG
AAAGGCACTAGTATTTGTTAATGGTACCTGTACCTGCTGCTTCTTCCGCC
TTTTCCCAAGATTCCATACGAGGATTTCTTCAGCGACTACATCTCGAACA
TGCACGCGGAGAAGGTCGTGCAGGACCTGCTCACGTGGAAGGATCAACAA
CCCTCTGCTAGGATCAAACGGTTCTTCCTGTGCGAGCACCCCTTCTTGAT
CTCTACCGACTTGAAGAAGGTGAATCGTTGTTGAGAAAAGCCCCTTCGCT
ATCGAAACCTACATTGGTATCGACACTAGACCGTTCTCCTTTGAGAGCAC
GCCTGCCCAATCTCTTCCCGGAAAATATGGTGTGCGCGACCCGAAGTTTA
TAAATAGATCCGATCGTGGATCCGGTACGAGAGGGTGGTGTGACGACGGC
CCTTGACCCTCTCATATCGGAGTCCCCTCCTTTATCGGAATAAGAGGGTA
CCGAGCTATGCTATGGCGGGTCGAGTCCGTGACAACCGATTTCGACCCTC
TTCTCTCGGAGCCCCCTCCTGTATGGTACCCTCTTGGTGTATCGGAGCCA
CGACTGTATCGCAAACCTACCTTAGGATAGAAAAAGGACGGCTCTCCTGT
GGGAGCACGCCTTCCTTATCTCTACCGGGAGAAAGAGGACGAACCAGTAG
TATTTGTACATCGGAAGGTTAGCAGCGAAAAAGGGCATGATCACAACGTC
TCTCTTCTTCCCGTTGCGAACAAACAAAGAAGCAATCAACGCTGTACAGG
TATGCGATGGTGTGGAAAATCCTTGACCATTCAGCTTGGTATAGGACGTG
GGCAGGCTTCTTTTCTATGCCGCTGCTACTGCTGTGTGTGTGTTGTCAGC
TTCTCATGTTGTCATCCTGCGCTAACCTCCTGACTATTGGGTAGAACCCA
GTTTTTTTTTATACATCATATCACTGGCAGTAACGGCCGTGGTTATGGGC
AAGTGGGGCCTTTTTTTGGCTTATTCTTGATAGTCCCTTGATTGCTCGAA
CTTTACCTTGTTTAGGATTTCAGTGGTCGCATCAAGACCACCATGTCCAC
CACCACCGTCACCATCATCAGCAACAATTGCAACAATTGCTGCATGAGCG
TCATCATACTCACCCTCCCCCATCATCAAATCATTACAATGCCATCATCC
TCATCATCGTCAACAACAACCGCAGCCGACCCCACGCCCATCCGCACGCG
CACCACCAACCTGCAGTTCCTGCTTAAGGCGGAAGCTCAAGTGGAGCAGG
ACAAGGCCGCCCGAGCCTCGGGGCACTACGTTCCCCTCGTAGGAGTGGTA
ATCAAGCCGTTCTTGGTGCTCACGGTCAACAGGACCCACTTGCTCCAGGA
AACGCTGGCGCAGGCAAGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8006:252..6823-

>mRNA_Ecto-sp13_S_contig8006.19326.1 ID=mRNA_Ecto-sp13_S_contig8006.19326.1|Name=mRNA_Ecto-sp13_S_contig8006.19326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8006:252..6823- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAGCGGGGCGACCCCGCCCGCCTTTCTGGCCGCCCGCGCGGCCTG
CGGGCAGAGCCACACCGTGCTCGTCTCGACGGCGGGGGACGCGTGGGCCT
GCGGCCGCAACCGGTCGGGCCAGCTGGGCGTCGATCCCGACATTGTCGGG
GAGACCAGCACGCCGGTGAGGGTCCCGCTAGAGGGGGAAGGGGGAGGGGG
AGGAGCGGCGGCGGCAGACGCCGTCCAAGCGGCCGCGGGCAGGGCGCACT
CCCTGGTGCTGCTATCCGACGGGAGGGTGATCGGCTTCGGGAGCGACGAG
TTCGGGGCGCTCGGACCTGCTGAGCCTCCCGCCGCCGCCGCCGCCGCCGT
TGGCGACAGCATGGAGGTGGACACCGCGACGCCCCGCCCTTGCTACCATT
GGAAGCCCACGGTCATCGAGGCACTCCGCGGGCGGTGGGTAGCCTCGGTG
TCTGCCGGCGGCGAGCAAAGCTTCGCGTTAGCGGTGGGCCCGGAGCCGCC
GCCGGCCGTGGGGGTGGGGGCGGGGACAGCCCACCCCCCGCCCCCGTTGC
CTTCTTTAACGGGTGACGCCGCTTCTGTCGCTGGGGGCTTGGGACGGCCA
GACGAAAAGGCCACCGTGGCGGAGGGCATGTCAGTAGATAGCGACTCGGC
AGCGGAGCAGAAGTTCACGCCAGCACCAGCGGTCGCCGAGAGCGAGACAC
GCCGGGAAGGAGGCGGAGAAGATGCGGATGGGGGGCCGGCAAGCCTCGCC
GGGGCTGCCGGCCCGCTCGTGAGACGGGGCTCCGAGGCGCTGTCTCTTCG
GCGGAGGTTCTCGCTCCCTCCGACGCTGAGGATGTGGACGGCGGGCGAGT
TCCTTCAGCTGATCAGGAGGGCAGAGGAAGCCGCGGTGACCGGGGACAGC
TCGGACGTGGAAGGGGAGGCCAGCCGCGGGGGCGCGGAGGAAGCGGGAGT
GCTGGAGGCGGTGCGACAAACTTTCGCCTCGCCATCGGTACTGAGCGCGT
GCTTCAACATCGAAGCACCGGCAGAGGCCCGAAACGGCAACCTGGGGAGG
ACGCAGACGGAGGAAGGGAGGGGACAGGGGACGGTGTTCCCCCGGGTGGA
TGCGGCGGGGTTGGAAGCTGTGTACGCGGGGCTAGCGGGTCTGGGGCCGA
GGGTGGTGGAAACTCTGTGGTCTTCGATCGAGGAGGTGCGATCACGCTAC
CGGCAGCGGTGTCCCGACACCGGCTGCACTCTATTTGTCCCGATTCCTTC
AGCCGCGTTTTCGGAATGGCAGCGGTCAGGGAGGCGCAACAATCCCCTTC
GGCCTCCTCGAAATCTCGGTTCTTTCGTCCATCTTCGACCCCCGCCGTGC
CGGGCCTCGAGGCCGCCGGAGCCTCGTTCCTCCTCAAGTACTGGCAGGGG
TCCACCTTCTCGCGAGACGTGGGGGAGTCTCCGGACACGGGCAAGGACAC
GGCCATGGAGAGGATCTGCAAGACGGTGCTCGGGCTCAAGGGGCACGCCC
GCTGGTGGCTCATGCGCAGCGTCAAAGAGGACTATTCTGCGGAACTCTTC
TCCTCCCGACTGGTCAAGCCCATGGTCGAGCACCTTTCCATCTGGCTGA
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