mRNA_Ecto-sp13_S_contig7971.19272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7971.19272.1 vs. uniprot
Match: D7FLR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR9_ECTSI) HSP 1 Score: 647 bits (1668), Expect = 5.600e-204 Identity = 512/697 (73.46%), Postives = 518/697 (74.32%), Query Frame = 1
Query: 1 AIVKGDVLADYVTVKGSFDGNIECRDLLIVRRGGTCSGKVSYAEMRVEPGANVEATMRLLGAADAKDKDGYPTVLSLPAGVFAVAPTAAXXXXXXXXXXXXXXXXXXXXXXXXXX--SAVPXXXXXXXXXXXXXXXXXXXXXXXXXETPAAVTXXXXXXXXXXXXXXX-ASAELISTELPSPSRRSWTWAELPAFTLPTTPTGLEAAMAVMEQKQRGVAAVRLSASSXXXXXXXXXXXXXXXXXEE---EADSVAEVAVPGGVDRGDGVVSTSTTTGLTIVAVSPRNTNQVGHFTTITSXXXXXXXXXXXXXXXXXXXXXXXXXXSLSPSRRLLSPSAKGALVEEGKRALLAARKEKRERERLAELAARVAAPSKTDGDAAAEERGLAESKRMTLQEKAAAAVMPWGAGVGVAATSRRKNLVEAIPASLSPKPKRAADGGDAVGLDDPQHYHQRWLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---AFLLNLVPGAERGDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRRFRRTNSLENKGGRGWRVGKGGGGAMAEQPSSTPLSYSNSDDAAAQT--------------TAVSPGGDGGGVMAGXXXXXXXXXXSSLALAGVESGSTNGTCSGGGATALGEKTAGIITAPFAAVGGAIAARRRVRGWRTVVGGVEAGDLYQ 2022
AIVKGDVLAD VTV FDGNIEC+DLLIVRRGGTCSGKVSYAEMRVEPGANVEATMRLLGAADAKDKDGYPTVLSLPAG FAVAPTAA XXXXX XXXXX SAVP X XXXX XXXXXXXXXXXXXXX A AELISTELPSPSRRSWTWAE P FTLPTTPTGLEAA+A MEQKQRG AVRLS XXXXXXXXXXXXXXXXX EADSVAEVAV GGVDRGDG+VSTSTT GLTIVAVSPRNTNQVGHFTTITS XXXXX XXXXXXXXXXXXXXXX SLSPSRRLLSPSAKGALVEEGKRALLAARKEKRERERLAELAARVAAPSKTD DAAAEER LAESKRMTLQEKAAAAVMPWGAGVGVAATSRRKNLVE IPASLSPKPKRAADGGD VGLDDPQHYHQRWLQXXXXXXXXXXXXXXXXXXXXXXXXXXXX AFLLNLVPGAER DP SRRFRRTNSLENK GRGWR GKGG V+PGGD GG SS AL+G+ESGS NGTCSGGGATALGEKTAGIITAPFAAVGGAIAARRRVRGWRTVVGGVEAGDLYQ
Sbjct: 1372 AIVKGDVLADCVTVXXXFDGNIECKDLLIVRRGGTCSGKVSYAEMRVEPGANVEATMRLLGAADAKDKDGYPTVLSLPAGAFAVAPTAAAXXXXXTTVVPTATAITAMAPXXXXXXXSAVPPPSXTSASGEEGPETAATSTPXXXXXXXXXXXXXXXXXXXXXXXXXXTAPAELISTELPSPSRRSWTWAEHPTFTLPTTPTGLEAAVAAMEQKQRGAGAVRLSXXXXXXXXXXXXXXXXXXXXXXXXXEADSVAEVAVTGGVDRGDGIVSTSTTAGLTIVAVSPRNTNQVGHFTTITSSXXXXXRSFXXXXXXXXXXXXXXXX-SLSPSRRLLSPSAKGALVEEGKRALLAARKEKRERERLAELAARVAAPSKTDADAAAEERRLAESKRMTLQEKAAAAVMPWGAGVGVAATSRRKNLVEVIPASLSPKPKRAADGGDTVGLDDPQHYHQRWLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLLNLVPGAERSDPAAAAAAGEHPATKTPECTPPGSSKGGRDAPSSSSSQHFSRRFRRTNSLENKLGRGWRAGKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMAGVNPGGDSGG-------------RSSPALSGIESGSRNGTCSGGGATALGEKTAGIITAPFAAVGGAIAARRRVRGWRTVVGGVEAGDLYQ 2054
BLAST of mRNA_Ecto-sp13_S_contig7971.19272.1 vs. uniprot
Match: A0A6H5L4Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z9_9PHAE) HSP 1 Score: 637 bits (1644), Expect = 1.740e-198 Identity = 596/882 (67.57%), Postives = 606/882 (68.71%), Query Frame = 1
Query: 1 AIVKGDVLADYVTVKGSFDGNIECRDLLIVRRGGTCSGKVSYAEMRVEPGANVEATMRLLGAADAKDKDGYPTVLSLPAGVFAVAPTAAXXXXXXXXXXXXXXXXXXXXXXXXXXSAVPXXXXXXXXXXXXXXXXXXXXXXXXXETPAAVTXXXXXXXXXXXXXXXASAELISTELPSPSRRSWTWAE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPAFTLPTTPTGLEAAMAVMEQKQRGVAAVRLSASSXXXXXXXXXXXXXXXXX-----EEEADSVAEVAVPGGVDRGDGVVSTSTTTGLTIVAVSPRNTNQVGHFTTITSXXXXXXXXXXXXXXXXXXXXXXXXXXSLSPSRRLLSPSAKGALVEEGKRALLAARKEKRERERLAELAARVAAPSKTDGDAAAEERGLAESKRMTLQEKAAAAVMPWGAGVGVAATSRRKNLVEAIPASLSPKPKRAADGGDAVGLDDPQHYHQRWLQXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RAFLLNLVPGAERGDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRRFRRTNSLENKGGRGWRVGKGGGGAMAEQPSSTPLSYSNSDDAAAQTTAVSPGGDGGGVMAGXXXXXXXXXXSSLALAGVESGSTNGTCSGGGATALGEKTAGIITAPFAAVGGAIAARRRVRGWRTVVGGVEAGDLYQ 2022
AIVKGDVLADYVTVKGSFDGNIEC+DLLIVRRGGTCSGKVSYAEMRVEPGANVEATMRLLGAADAKDKDGYPTVLSLPAGVFAVAPTAA XXXXXXXXXXXXXX S VP XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX ELISTELPSPSRRSWTWAE LP FTLPTTP GLEAA+AVMEQKQRG AVRLSASSXXXXXXXXXXXXXXXXX +EE DSVA+VAVPGGVDRGDGVVSTST+TGLTIVAVSP NTNQVGHFTTITS XXXXXXXXXXX SLSPSRRLLSPSAKGALVEEGKRALLAARKEKRERERLAELAARVAAPSKTD DAAA+ER LAESKRMTLQEKAAAAVMPWGAGVGVAATSRRKNLVEAIPASLSPKPKRA D G+A LDDPQHYHQRWLQXXXXXXXXXXXXXXXXXXXXXXXXXXXX RAFLLNLVPGAER +P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SRRFRRTNSLENKG RGWRVGKGGGGAMA+QPSS L YSNSDD AAQ+TAVSPG GGGVMAG XXXXXXX SSLALAGVESGS NGTCSGGGATALGEKTAGIITAPFAAVGGAIAARRRVRGWRTVVGGVEAGDLYQ
Sbjct: 1546 AIVKGDVLADYVTVKGSFDGNIECKDLLIVRRGGTCSGKVSYAEMRVEPGANVEATMRLLGAADAKDKDGYPTVLSLPAGVFAVAPTAAAXXXXXXXXXXXXXXPDTT-------SVVPPPSXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXELISTELPSPSRRSWTWAEVRAARAGGAAAGGLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPSKTNKASKLPADEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVRRRAWANSNXXXXXXXXXXHDLVDVGPLTSPIPSGLLRKHRSLHSSSSCAAPALELPTFTLPTTPAGLEAAVAVMEQKQRGAGAVRLSASSXXXXXXXXXXXXXXXXXXXXXXKEEPDSVAKVAVPGGVDRGDGVVSTSTSTGLTIVAVSPCNTNQVGHFTTITSPCSGGAPPFAXXXXXXXXXXXSS---SLSPSRRLLSPSAKGALVEEGKRALLAARKEKRERERLAELAARVAAPSKTD-DAAADERRLAESKRMTLQEKAAAAVMPWGAGVGVAATSRRKNLVEAIPASLSPKPKRAGDEGEADVLDDPQHYHQRWLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAFLLNLVPGAERVNPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-FSRRFRRTNSLENKGDRGWRVGKGGGGAMAKQPSSPLLLYSNSDDTAAQSTAVSPGASGGGVMAGVNXXXXXXXRSSLALAGVESGSKNGTCSGGGATALGEKTAGIITAPFAAVGGAIAARRRVRGWRTVVGGVEAGDLYQ 2414 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7971.19272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7971.19272.1 >prot_Ecto-sp13_S_contig7971.19272.1 ID=prot_Ecto-sp13_S_contig7971.19272.1|Name=mRNA_Ecto-sp13_S_contig7971.19272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=631bp MRVEPGANVEATMRLLGAADAKDKDGYPTVLSLPAGVFAVAPTAAAAAAAback to top mRNA from alignment at Ecto-sp13_S_contig7971:24..3974+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7971.19272.1 ID=mRNA_Ecto-sp13_S_contig7971.19272.1|Name=mRNA_Ecto-sp13_S_contig7971.19272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7971:24..3974+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7971:24..3974+ >mRNA_Ecto-sp13_S_contig7971.19272.1 ID=mRNA_Ecto-sp13_S_contig7971.19272.1|Name=mRNA_Ecto-sp13_S_contig7971.19272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7971:24..3974+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |