mRNA_Ecto-sp13_S_contig7958.19253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7958.19253.1
Unique NamemRNA_Ecto-sp13_S_contig7958.19253.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: D7FHW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW5_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.380e-48
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 3
Query:  153 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRD------LTTSACMGCGAVKRTF 404
            MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVR       LTTS CMGCGAV+RT+
Sbjct:    1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRVVRPPTYLTTSVCMGCGAVERTY 90          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A6H5L5Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z1_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.320e-39
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 3
Query:  153 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN
Sbjct:    1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 65          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A835ZG13_9STRA (Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG13_9STRA)

HSP 1 Score: 137 bits (344), Expect = 9.500e-39
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 3
Query:   60 RPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            +P YR +ASVN MREII+ +LE +L G TY  D AT QTK+I DEIK+ LK M+L RYKYVVQV+IGEQRGEGVRMG RCFWD++TD  ASE+++N
Sbjct:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFIN 96          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A7S2BCB7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCB7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.980e-34
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 3
Query:   33 AGQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            A +  TYQ RP YR + SVN M+ +IK V++ EL+G TY  +    QT  I D+I+N L+++  PRYK+ VQVVIGEQRGEGVRMG R FWD++TD  ASETYVN
Sbjct:   33 ASKTPTYQIRPEYRQRISVNEMKVVIKSVVKEELEGKTYQTESVQDQTTAIADKIRNRLRDLQKPRYKFFVQVVIGEQRGEGVRMGCRTFWDADTDAYASETYVN 137          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A507FCI1_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507FCI1_9FUNG)

HSP 1 Score: 125 bits (314), Expect = 6.270e-34
Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   33 AGQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRDLTTSAC 374
            A     Y  RP ++ K     + ++I  +L   L G TYH D  +  T+ I DEIKN LKE++LPRYKY+V VVIGE RGEGVRMG RCFWD++TDNVA +T++NV +L    C
Sbjct:    6 AEDSAVYSIRPNFKQKFRPAIVTKLIHQILADRLTGATYHPDTCSQWTREIADEIKNRLKELDLPRYKYLVNVVIGEMRGEGVRMGCRCFWDADTDNVAQDTFINVSELLVFIC 119          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A7S3MAW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAW9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.020e-33
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query:   48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            TY   P Y++K  V   REIIK VL+S+L+   Y+M+     TK++ D+IK+ LK++ LPRYK VVQV IGEQRG+GVRMGSRCFWDS+TD+ ASETY N
Sbjct:   13 TYVIHPEYKNKFRVGPTREIIKEVLQSKLEKAQYNMETTQALTKQVADDIKDRLKDLVLPRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDSYASETYSN 112          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A7S2S8M8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8M8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.930e-33
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query:   48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            TYQ RP Y+ + SV  M+ II  V++ EL+G TY +DQA VQTK I DEI+N LK ++LPRYK++VQVV+GE R EGVRMG R FWD+ETD  A+  Y+N
Sbjct:    9 TYQIRPAYKQRVSVAAMKTIIDTVMKEELEGKTYAVDQAQVQTKHISDEIRNRLKALDLPRYKFMVQVVLGEMRLEGVRMGCRTFWDAETDAHATSNYMN 108          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A812LYX8_9DINO (DYNLT2B protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812LYX8_9DINO)

HSP 1 Score: 122 bits (307), Expect = 5.840e-33
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 3
Query:   36 GQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            G + TY   P Y++K      REII+ VL+S+L   TY M+   + TK++ D+IK+ LKE+NLPRYK VVQV IGEQ+G+GVRMG+RCFWD +TD+ ASE Y N
Sbjct:    7 GDENTYVIHPEYKNKFRPGPTREIIRDVLQSKLDKATYSMETTQLLTKQVADDIKDRLKELNLPRYKIVVQVSIGEQKGQGVRMGTRCFWDGDTDSYASEMYCN 110          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A813IMB4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IMB4_POLGL)

HSP 1 Score: 122 bits (305), Expect = 2.510e-32
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:   48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            TY   P Y++K      RE+IK V++++L+  TY  D  ++ TK++ DEIK+ LKE+ LPRYK VVQV IGEQ+G+GVRMGSRCFWD +TD+ ASETY N
Sbjct:   37 TYVIHPEYKNKFRPGPTREVIKDVMQAKLERATYSPDTTSLLTKQVADEIKDRLKELMLPRYKIVVQVAIGEQKGQGVRMGSRCFWDGDTDSYASETYSN 136          
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Match: A0A6U6Z4C7_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6Z4C7_9DINO)

HSP 1 Score: 120 bits (301), Expect = 4.860e-32
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:   48 TYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 347
            +Y   P Y++K      +EIIK VL+S+L+   Y M++    TK++ D+IK+ LKE+N  RYK VVQV IGEQRG+GVRMGSRCFWDS+TDN ASETY N
Sbjct:   12 SYIIHPEYKNKFRPGPAKEIIKEVLQSKLEKAQYSMEETQALTKQVADDIKDRLKELNWHRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDNFASETYSN 111          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7958.19253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHW5_ECTSI4.380e-4888.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5Z1_9PHAE1.320e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG13_9STRA9.500e-3966.67Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2BCB7_9STRA3.980e-3457.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A507FCI1_9FUNG6.270e-3450.88Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
A0A7S3MAW9_9STRA1.020e-3359.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2S8M8_9STRA1.930e-3359.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812LYX8_9DINO5.840e-3354.81DYNLT2B protein n=2 Tax=unclassified Symbiodinium ... [more]
A0A813IMB4_POLGL2.510e-3256.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A6U6Z4C7_9DINO4.860e-3257.00Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7958contigEcto-sp13_S_contig7958:3630..4998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score161.4
Seed ortholog evalue3.6e-37
Seed eggNOG ortholog2880.D7FHW5
Model size514
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.regulation of intraciliary retrograde transport
EggNOG OGsKOG4108@1,KOG4108@2759
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-12_006150.1
Cds size492
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7958.19253.1prot_Ecto-sp13_S_contig7958.19253.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7958 3641..4987 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464067.0090427-UTR-Ecto-sp13_S_contig7958:3629..36401681464067.0090427-UTR-Ecto-sp13_S_contig7958:3629..3640Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7958 3630..3640 -
1681464067.0825126-UTR-Ecto-sp13_S_contig7958:4987..49981681464067.0825126-UTR-Ecto-sp13_S_contig7958:4987..4998Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7958 4988..4998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464067.0288968-CDS-Ecto-sp13_S_contig7958:3640..39301681464067.0288968-CDS-Ecto-sp13_S_contig7958:3640..3930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7958 3641..3930 -
1681464067.0425541-CDS-Ecto-sp13_S_contig7958:4200..42611681464067.0425541-CDS-Ecto-sp13_S_contig7958:4200..4261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7958 4201..4261 -
1681464067.0532534-CDS-Ecto-sp13_S_contig7958:4675..47481681464067.0532534-CDS-Ecto-sp13_S_contig7958:4675..4748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7958 4676..4748 -
1681464067.0641909-CDS-Ecto-sp13_S_contig7958:4919..49871681464067.0641909-CDS-Ecto-sp13_S_contig7958:4919..4987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7958 4920..4987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7958.19253.1

>prot_Ecto-sp13_S_contig7958.19253.1 ID=prot_Ecto-sp13_S_contig7958.19253.1|Name=mRNA_Ecto-sp13_S_contig7958.19253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MNGVGADAGQQLTYQSRPTYRHKASVNTMREIIKGVLESELQGCTYHMDQ
ATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDS
ETDNVASETYVNVRDLTTSACMGCGAVKRTFCCRCTLRFRLFVPVAASSN
SHPSALLLAPKTV*
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mRNA from alignment at Ecto-sp13_S_contig7958:3630..4998-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7958.19253.1 ID=mRNA_Ecto-sp13_S_contig7958.19253.1|Name=mRNA_Ecto-sp13_S_contig7958.19253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7958:3630..4998- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGATTCACCATGAACGGGGTAGGCGCCGACGCTGGACAGCAGCTCACG TACCAGTCGAGGCCGACTTATCGACACAAGTACGTCAGTTGATTTCCACG GACTGCTGTATCCGTGTGTAACGTTCGGGAGGTTTGTTTCAAGTGTCTAC GTTGGTTGTCCCTCCACTCAACGGTAACCTGCCTGTGTGCTCTGCGATAT ACTTTGTCATAACCCGTAACCTAGTCCTACCACTCACGTCGCGATACCAG GGCTTCTGTTAATACGATGCGGGAGATAATCAAAGGCGTCCTTGAATCGG AGCTGCAGGGATGCACCTATCATGTAAGGTTCCGATTCACGGCGCTTCTA GAGGGCCCTACCGAGTAGATTTTCAGTAGTACATGTAGAAAGTGGAGATA GTAGACTACCCACAACCAGAGAGCCGCTCACGTCATTGTGCAAGTTGGAT TCAAGATGGTGGCCGGCCCGAGGAGGAGGAGAATCGCTAAGTACTTGGAC AGCGGATGGATTCTCCTCATGACTGTGTGCTTGGGAGAGGAAGGGCATGT GAACCACGCATCATGCATGCATGATGACAGTCTACATATCTTCAAAGCAC ATGTGTATGGACATACACTTCCCCTCCCCTGCTTAGGTTTTCTTGTTTCG GCTGAATGTATCACTGGTAGGACAAACTGCAATTTTCATTTAAAAGAAAA TCCTTGCGACCGGGTTTTATCCGCGTTGGAAATACAGATGGACCAGGCTA CCGTACAGACAAAGAGGATTTGCGACGAAATAAAAAATGGGCTCAAGGGT GAGTGCATGTTCACACCAGAAACAACGTTGACTTTGTGCCATATTTTGGA TGGAGAGCGTCATGAGTGTAATGACGTATGTTCACAGCTAAGGCCCTCTG ATAACCAAGGTACCCATTCATTGTGGGATGGAGAGCGTCATGAGTGTAAC GACGTATGTTCAAAGCTAAGGCCCTCTGATAAACAAGGTACCCATTCATT GTGGCACCATTGAAGACAACACACCTGCTGCTGTTCGTTCACGCGGATGC TGTTCCATGTTGGCCCAGAGATGAACCTCCCGAGATACAAGTACGTGGTG CAAGTGGTGATCGGAGAACAACGGGGGGAAGGAGTGCGGATGGGTAGTCG CTGCTTTTGGGACTCCGAAACAGACAACGTTGCAAGCGAGACCTACGTCA ATGTGAGAGACTTAACTACAAGCGCGTGCATGGGGTGCGGGGCGGTGAAG AGGACATTCTGTTGTCGTTGCACCCTGCGTTTCAGGCTATTTGTGCCAGT CGCGGCATCATCAAATTCCCACCCAAGTGCTTTGCTCCTTGCACCAAAGA CCGTTTGATTATCTCCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7958:3630..4998-

>mRNA_Ecto-sp13_S_contig7958.19253.1 ID=mRNA_Ecto-sp13_S_contig7958.19253.1|Name=mRNA_Ecto-sp13_S_contig7958.19253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7958:3630..4998- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGGGGTAGGCGCCGACGCTGGACAGCAGCTCACGTACCAGTCGAG
GCCGACTTATCGACACAAGGCTTCTGTTAATACGATGCGGGAGATAATCA
AAGGCGTCCTTGAATCGGAGCTGCAGGGATGCACCTATCATATGGACCAG
GCTACCGTACAGACAAAGAGGATTTGCGACGAAATAAAAAATGGGCTCAA
GGAGATGAACCTCCCGAGATACAAGTACGTGGTGCAAGTGGTGATCGGAG
AACAACGGGGGGAAGGAGTGCGGATGGGTAGTCGCTGCTTTTGGGACTCC
GAAACAGACAACGTTGCAAGCGAGACCTACGTCAATGTGAGAGACTTAAC
TACAAGCGCGTGCATGGGGTGCGGGGCGGTGAAGAGGACATTCTGTTGTC
GTTGCACCCTGCGTTTCAGGCTATTTGTGCCAGTCGCGGCATCATCAAAT
TCCCACCCAAGTGCTTTGCTCCTTGCACCAAAGACCGTTTGA
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