mRNA_Ecto-sp13_S_contig794.19230.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig794.19230.1
Unique NamemRNA_Ecto-sp13_S_contig794.19230.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: D7FS22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 7.230e-63
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 QVWVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDIEARNPYN 345
            QVWVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTE+TAVAFKAMRRELSNLLVRKIEAPF PTGELSNMLVSCLGRLLDIEARNPYN
Sbjct: 1289 QVWVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTENTAVAFKAMRRELSNLLVRKIEAPFMPTGELSNMLVSCLGRLLDIEARNPYN 1403          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A0A835Z4K1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.280e-18
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHK-----KKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIE---APFTPTGELSNMLVSCLGRLLDIEA 330
            +V+YHS++KT+QVYLH++T  T FSL+LWG+ +RH R          KK A+ V +D WLRF+ TES  V FK +R++++ LL+ +IE   A  T   + + +L   + RLLD+EA
Sbjct:  900 YVLYHSRVKTRQVYLHETTCCTAFSLLLWGSHIRHLRHTEDTGGPTLKKRALIVAVDEWLRFKTTESIGVVFKHLRKDINELLLSRIESARAAHTDGAKFAGVLADVVVRLLDMEA 1015          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A0A7S3XX33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX33_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 1.830e-11
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGH--KKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDIE 327
            WV+YHSK+++ +VYLHDST+ + FSL+L+G  V   +  G    ++ A+ + +D W+ F+M +  AV  K  R E+  LL+ KIE P     +  N + + + +LL+ E
Sbjct:  248 WVLYHSKVQSSRVYLHDSTFISAFSLLLFGGDVTASQDKGTTGSRRNAL-LSVDEWVSFKMPKEAAVLCKVFRLEIDRLLLTKIEDPSANCWQRGNAITAVVRKLLESE 355          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: W7T633_9STRA (Putative atp-dependent rna helicase dhx36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T633_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.150e-9
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   13 VYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDIEA 330
            VYH KM+T + YLHD ++ +P S++L+G+ +R  R  G    + V + +D WL F+  E T+V     ++ L   L +KI  P +        +V  L R+L +EA
Sbjct: 1159 VYHRKMRTSRTYLHDISFVSPLSVLLFGSNIRTRREHGGIASKVVNITVDDWLSFKTKEETSVLVTVFKKHLDACLTQKITQPDSNFISRFQPVVRTLRRVLWLEA 1264          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: W7TVU1_9STRA (Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVU1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.670e-8
Identity = 31/86 (36.05%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKK-KEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAP 261
            +++YH K+++ ++Y +DST+ +PF+++L+G  ++ +   G  +  +++ V +D WL FRMT S+AV  K +R EL+ LL+ K   P
Sbjct: 1125 FLLYHKKVQSTKIYAYDSTFVSPFTILLFGGDIKIQWEHGSLEGDQSIAVTMDNWLSFRMTASSAVLVKYIRHELNQLLLEKFSDP 1210          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A7SF08_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SF08_NEMVE)

HSP 1 Score: 65.9 bits (159), Expect = 1.010e-7
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAP 261
            W++YH K+K+ +V++HDST   PF L+ +G  +      GH +     + +D +++FR  +  A   K +RREL  LL RKI  P
Sbjct:  670 WLIYHQKIKSSKVFIHDSTVIAPFPLLFFGGSISMHVEQGHGQGHET-IAVDNFIKFRSPKRIANLVKDLRRELDTLLERKISQP 753          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: A0A7S2ID12_9EUKA (Hypothetical protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2ID12_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.080e-7
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGE 279
            W+VYH K+ T ++Y+HD T  T   L L+GA    E  + H +     V++D W+  R++  TAV FKA+RR+L  L+  +IE      G+
Sbjct:  156 WLVYHEKVATGKIYVHDVTAVTSLDLFLFGA----EPQVLHAQHR---VIVDNWIEMRISPRTAVLFKALRRQLFVLMAERIEVEARTRGD 239          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: UPI001390545E (ATP-dependent DNA/RNA helicase DHX36 isoform X1 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390545E)

HSP 1 Score: 65.9 bits (159), Expect = 1.140e-7
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAP 261
            W++YH K+K+ +V++HDST   PF L+ +G  +      GH +     + +D +++FR  +  A   K +RREL  LL RKI  P
Sbjct:  978 WLIYHQKIKSSKVFIHDSTVIAPFPLLFFGGSISMHVEQGHGQGHET-IAVDNFIKFRSPKRIANLVKDLRRELDTLLERKISQP 1061          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: T1IZC6_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IZC6_STRMM)

HSP 1 Score: 64.3 bits (155), Expect = 3.330e-7
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRH---ERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDI 324
            W+VYH +MK+  VY+HDS+  +P+ L+L+G ++R    +R  G        V ID W++F   E  A     +R EL  LL  KI  P     +L+N   + L  ++D+
Sbjct:  829 WIVYHQRMKSTCVYIHDSSMVSPYPLLLFGGKLRCGAIDRKYG--------VTIDGWIKFWCPEERADLIMRLRNELDKLLEHKILHPAPTMWDLNNKEGNLLHTIIDL 929          
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Match: UPI000180C9D3 (ATP-dependent RNA helicase DHX36 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000180C9D3)

HSP 1 Score: 63.5 bits (153), Expect = 5.830e-7
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    7 WVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDI 324
            W+ Y+ KMKT +VYL+D++  +P+ L+ +G  +   +      K    + +D W+ FR     A   K +R+EL N+L RKI  PF+    LS+   S +  ++D+
Sbjct:  879 WLCYYEKMKTAEVYLYDTSEVSPYPLLFFGGDISTFQDEDGVNK----ISVDGWIDFRSESKVAETVKKLRKELDNILERKIREPFSTLLHLSSS-ASVIKSIIDL 979          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig794.19230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS22_ECTSI7.230e-6398.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4K1_9STRA5.280e-1843.97P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3XX33_HETAK1.830e-1136.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T633_9STRA4.150e-933.96Putative atp-dependent rna helicase dhx36 n=2 Tax=... [more]
W7TVU1_9STRA1.670e-836.05Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsi... [more]
A7SF08_NEMVE1.010e-736.47Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A7S2ID12_9EUKA1.080e-737.36Hypothetical protein n=2 Tax=Haptolina brevifila T... [more]
UPI001390545E1.140e-736.47ATP-dependent DNA/RNA helicase DHX36 isoform X1 n=... [more]
T1IZC6_STRMM3.330e-733.94Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
UPI000180C9D35.830e-732.08ATP-dependent RNA helicase DHX36 n=1 Tax=Ciona int... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig794contigEcto-sp13_S_contig794:18681..20549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score214.9
Seed ortholog evalue1.8e-53
Seed eggNOG ortholog2880.D7FS22
Preferred nameDHX29
Model size1397
KEGG koko:K18995
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016282,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0070035,GO:0070993,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
EC3.6.4.13
Cds size321
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.5934913-UTR-Ecto-sp13_S_contig794:18680..197291681464065.5934913-UTR-Ecto-sp13_S_contig794:18680..19729Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig794 18681..19729 -
1681464065.6290548-UTR-Ecto-sp13_S_contig794:20522..205491681464065.6290548-UTR-Ecto-sp13_S_contig794:20522..20549Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig794 20523..20549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464065.608791-CDS-Ecto-sp13_S_contig794:19729..199171681464065.608791-CDS-Ecto-sp13_S_contig794:19729..19917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig794 19730..19917 -
1681464065.6185296-CDS-Ecto-sp13_S_contig794:20389..205221681464065.6185296-CDS-Ecto-sp13_S_contig794:20389..20522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig794 20390..20522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig794.19230.1prot_Ecto-sp13_S_contig794.19230.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig794 19730..20522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig794.19230.1

>prot_Ecto-sp13_S_contig794.19230.1 ID=prot_Ecto-sp13_S_contig794.19230.1|Name=mRNA_Ecto-sp13_S_contig794.19230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRF
RMTESTAVAFKAMRRELSNLLVRKIEAPFTPTGELSNMLVSCLGRLLDIE
ARNPYN*
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mRNA from alignment at Ecto-sp13_S_contig794:18681..20549-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig794.19230.1 ID=mRNA_Ecto-sp13_S_contig794.19230.1|Name=mRNA_Ecto-sp13_S_contig794.19230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1869bp|location=Sequence derived from alignment at Ecto-sp13_S_contig794:18681..20549- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCTGGGTAGTGTATCACAGCAAGATGAAGACCAAGCAAGTGTACCT TCACGACTCCACGTACGCAACACCGTTCAGCCTGATGCTCTGGGGCGCAC GGGTTCGGCATGAGCGGCCGCTTGGACACAAGAAGAAGGAGGCTGTCGAG GTGGTCATTGGTGAGACAAACAAGCATAAGAAAGTTGGTGCACCCACGCC AGAAACATTCGTCGTTGTGGGCTAGTGGAGTGTTGATTGCAAGTCTTTCG AATGTTATTTTGTCTGTGCGGCCTATATGTTGAGCTGGCTTTGTGTATCA TGGGCTTTGCCTTGAAGTACATGGACGAGGAGGTACTAAAGTGGGCAGAG GCCACGGCGTTTTTATGATGAATAAAACACGCACAGCAACAAAAGAACGA CTACAGTCGAGGTGAAAACTGCCTCCTCTCACACCCCTGTTCTGCCGAGA CCCGCGTTGCCTCTCGGCTTACGTGCAGGGCTCGCAATTCCGTCAGTGTG TAATAATGTCTCCAAAAAGCACGGGAAGACTCTGGTGTCTCTCTCCCTGA CACCCCGGCCCCCCTTGCGTTTCGTCGTTTGTCTGCGGACACGCGCCCTG AAATACATGCGTTATCCTTGTGATGTCAACAGACCGATGGCTGCGGTTCC GAATGACGGAGAGCACGGCGGTGGCATTCAAGGCGATGCGGCGGGAGCTG AGCAACCTTCTCGTGCGCAAGATCGAGGCGCCTTTCACGCCTACGGGGGA GTTGTCAAACATGCTCGTGTCTTGCCTCGGGCGACTGCTGGACATCGAAG CCAGAAACCCGTACAACTGAAAAAGGACGGCACGTCAGTGTGTTGGCGAC AAGCACACGGGGCTAGCACGGATTTTGATTGCCTTCGACGCGCCTGTTTT GTGCTCTTCGACATCAAGTTGCGCTTGTTCTGTGGTGGTCTGTAGAAGGG GTGTCGTTTGAAATCTTTACCGAGTAGGCAGCGTTGCGCGGTTGTATTAG GTAGGAGAGCCCGCGGAGTGGGTCGAGATGATGCCTTGCCGTTGCAGAGG TTACGCATTGGCCACCTGCAGAACGCTCCCTTCCTGAGGTTATTCATTCA CGCGTGGCTTTCTACGACCGCTCTGCATGTTTGGCAAAGAAGAGGGCTAC GTTGCGAAGACCTCGGCGAAGACGTCCGTCGCCGACAGGCACCTCCCTCC CGGCGCACGGCTTCAAGGATCGCCTACGGCTGCCTCGTGCCGTAGATTAC GGTCGCCGCCTTCTGAAGGGAAAAGTTAATTGCATACCGTAACGACACAC GATAGCACGCGCCCCCGTAACAATATTGATACAAAGTATCAGTTTCATCA CCCGGGATATTTTAGCTGTTGTTGTGCGGTTTCGTCTGTCATGGTATTAT TTCGTCTAAGAGTACGCTATTTTTGGGCTCGTCTCGAGCCGAAAACAAAA GCTTCCAAAGTTCCACTCCAGGTGTCACCTTCTCGTGCGCGGTTGTGATA TCTTACGTCATGTGTACGGTGCTGCAGTCATGCTTTTGTTCTTCGCCCTA GAGAAAAGGTTGGACACCATGTAGTCTACAGTATATGCATAGCATACGTA TGACCCCGTAGTCATCTGGGGGCTTAGCCTATCGGAACCGCTCGACGTTG ATTCGTGTATGTTGGCAAAAAAAGTAGTCTTGATGTCAAATGTGTGTTTG CGCTCTCTACTAACTTGTAGAACTTCGTTTTGGGTTCACTGGCCTTTGAC CTGCTCGGGTGTACATGTAGAGATGTCGGTGTGTTCTCATCCCCACTCGA CTGCATGATTGGGGGATCACAGAACAATATACTGCGTGCCTTTCAACCCT GTATCAATCGTCCTCAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig794:18681..20549-

>mRNA_Ecto-sp13_S_contig794.19230.1 ID=mRNA_Ecto-sp13_S_contig794.19230.1|Name=mRNA_Ecto-sp13_S_contig794.19230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig794:18681..20549- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGACCAAGCAAGTGTACCTTCACGACTCCACGTACGCAACACCGTT
CAGCCTGATGCTCTGGGGCGCACGGGTTCGGCATGAGCGGCCGCTTGGAC
ACAAGAAGAAGGAGGCTGTCGAGGTGGTCATTGACCGATGGCTGCGGTTC
CGAATGACGGAGAGCACGGCGGTGGCATTCAAGGCGATGCGGCGGGAGCT
GAGCAACCTTCTCGTGCGCAAGATCGAGGCGCCTTTCACGCCTACGGGGG
AGTTGTCAAACATGCTCGTGTCTTGCCTCGGGCGACTGCTGGACATCGAA
GCCAGAAACCCGTACAACTGA
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