mRNA_Ecto-sp13_S_contig7931.19220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7931.19220.1
Unique NamemRNA_Ecto-sp13_S_contig7931.19220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7931.19220.1 vs. uniprot
Match: D7FP56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP56_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 2.260e-102
Identity = 196/266 (73.68%), Postives = 205/266 (77.07%), Query Frame = 1 
Query: 1138 AAYHTATPVNDGRKVVFVGGGKSWGCSTIYLLDAVGLIWSSFQAVGGVGLSEQRCLHTAVSVTGVETENSDDGGQQRHRPQREEDVCQPDSSAVAVPDAHSSPPP-IQGEINETSAAETPSVQLWGPVTTAAGPGSTPSTYPDNGTVSPAAKKKGGGKEGAAGSKTSNTKDADKTSGSRSSSGDDRRQGEGTDCHAGDGEGGNPLVFESILIFGGVVGKAAVSGD------AIVLRHDGTVAPLRLARNLPPSPGPRYSHAMVSVP 1914
            AAYHTATPVNDGRKVVFVGGGKSWGCSTIYLLDAVGLIWSSFQAVGGVGLSEQRCLHTAVSVTGVETENSDDGGQQ HRPQ E                       I+GE +ETSAA TP+VQLWGPV+TAAGPGSTPST PDNG VSP AKKKGGGKEGAAGSKTSNTKDADKTSGSRSSSGDDRRQGE TDCHAGD EGG+PLVFESILIFGGVVG+AAVSG+      A   R +    P+      PP   PR S    S P
Sbjct:   17 AAYHTATPVNDGRKVVFVGGGKSWGCSTIYLLDAVGLIWSSFQAVGGVGLSEQRCLHTAVSVTGVETENSDDGGQQPHRPQPEXXXXXXXXXXXXXXXXXXXXXXXIRGETSETSAAATPNVQLWGPVSTAAGPGSTPSTDPDNGAVSPTAKKKGGGKEGAAGSKTSNTKDADKTSGSRSSSGDDRRQGESTDCHAGDDEGGDPLVFESILIFGGVVGEAAVSGEGTGDAMASPTRREAARVPVAKIHRPPP---PRCSTVETSTP 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7931.19220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP56_ECTSI2.260e-10273.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7931contigEcto-sp13_S_contig7931:778..6773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score288.1
Seed ortholog evalue5.4e-75
Seed eggNOG ortholog2880.D7FP56
Model size3140
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-10_002570.2
Cds size1032
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7931.19220.1prot_Ecto-sp13_S_contig7931.19220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7931 4399..6773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.8607886-UTR-Ecto-sp13_S_contig7931:777..9321681464064.8607886-UTR-Ecto-sp13_S_contig7931:777..932Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7931 778..932 +
1681464064.8736594-UTR-Ecto-sp13_S_contig7931:1448..24201681464064.8736594-UTR-Ecto-sp13_S_contig7931:1448..2420Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7931 1449..2420 +
1681464064.8822093-UTR-Ecto-sp13_S_contig7931:2785..34641681464064.8822093-UTR-Ecto-sp13_S_contig7931:2785..3464Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7931 2786..3464 +
1681464064.8911269-UTR-Ecto-sp13_S_contig7931:4096..43981681464064.8911269-UTR-Ecto-sp13_S_contig7931:4096..4398Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7931 4097..4398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464064.8998263-CDS-Ecto-sp13_S_contig7931:4398..44711681464064.8998263-CDS-Ecto-sp13_S_contig7931:4398..4471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7931 4399..4471 +
1681464064.9085672-CDS-Ecto-sp13_S_contig7931:5267..61191681464064.9085672-CDS-Ecto-sp13_S_contig7931:5267..6119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7931 5268..6119 +
1681464064.9176638-CDS-Ecto-sp13_S_contig7931:6666..67731681464064.9176638-CDS-Ecto-sp13_S_contig7931:6666..6773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7931 6667..6773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7931.19220.1

>prot_Ecto-sp13_S_contig7931.19220.1 ID=prot_Ecto-sp13_S_contig7931.19220.1|Name=mRNA_Ecto-sp13_S_contig7931.19220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
MGRGTRRPRGRGGRRPGYQWRRFTGRHHQDIRRWRRLHRAAGRERPKAGQ
RTVRLRGGGGCGRRRAGCCHGERRWWRRQRWVVLGRLGCRQAPWTGRAPV
CGSTQGGKRWGWQWWWGRRRRRRRRGRGGGRGGGRGAAADVDEDIAIVVA
AFGPGCPPLASYRGDFKRGVRDGHGVCSFFTASCGGGCSVATGSTLGATS
IPTIPDSYDGEWVGDRPLGRGVLSLRAVAAAPAAPSNRFSSSIAGSGSGL
AGRGGGSGGSIEGLWTEEGLAHGREKLPGKGGVYEGQYRLGKREGHGRLD
LPDGSEYEGAWRNGRQNGIGTFRCGVTRHVYTGKWVGGVRCGRG
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mRNA from alignment at Ecto-sp13_S_contig7931:778..6773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7931.19220.1 ID=mRNA_Ecto-sp13_S_contig7931.19220.1|Name=mRNA_Ecto-sp13_S_contig7931.19220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7931:778..6773+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGCTCCCGCCACGAGTAGTAGGCGTGTGAGGATAGTGGTATCAACGA
ATCGATGGGACTTTTGTGGCAGAAGGTCGACATATGTGATGGATTACCAC
CCGCAGATCACAACGACAACGTCGGCGGGGCCATACCCTGCGTCGTCGGA
AATAGGCAAGTCCCGCAGAGGAGAGTTGATGATGCCCAAAGTCGACGCAC
CTGTACATCTAGACTATGGTGTGCCATCATCAGCGAAAGAGCAGTTGACG
ATGATAGTGGAAGTGAAGAAGCGTTGTTTTCTTCCTGCCCCTGGACTGTT
TCTTATCGCTGTTTACGTCGATCTTGTGTTTTAGGTTCACGCACTGACTC
TCTCGAGAATCACACACAGCGAGCGCGCTCGGTTCTGCAGTATTATTTCG
TCGTATTGGCCAGTACATGGAACCACATAGGAGCAAGGGCCCACATGGTG
GGCCCAGTGGCGTGCATAGAGAAATGCGGTGATCATCAATCGGCAACACC
ACAGTAGAAGTCTATGATCCCTATTTCGTAGATTGCGCTGTACCAGTATA
CTGTCAATCTAAATTGCCGTACACATACTGCTGCACACGGCATCAAAACA
ATTTCGAAACACCCAACAGCAGTGTTTTGTCGTTCTCATATTTTTCCCTC
GGTGGCGAACACCACACGCAGGGTGTATCTCGTGGGTGGGTCGGGAACGA
AAACAAGCGACCCCAACATCGCCCTGCACCTGTTTCGATGGTCGCTACCT
TGCCCTTTCCGGACTTCATGGGGGGAACAACAACAACGACCACATTCGTC
CCACGGGATCTCTAATAGCCACGCTACCGCAGCAGCGGACCGCATTGGAG
CAACTACATCAGCCTCGGCGGCATCAGTGCCATCGGTGTCAGTAGCTCCT
GCTGATTTGTCCCGCGCTGCCGCAGCAGCTGGTCCCGCTCCCTCTCCCGC
CCTTGCCCGTATCACCGCTTCCCAAGAAGGCGATATCCCAATATCGAGGA
TTGGACACGCTGCCGTCACCCTAGTCGACCCGTCGCGTGCACCCTCACCC
TGGTCGTCTTCAATATATCTCTTTGGCGGCGAGGCATCAAACCCCACTCC
TGCTCGCAACGATTGCGCTGGATCGCCTGCATATCCTAAGCTTGGAGATG
TCTATGAGGCTACCCCGAAATCGGGGTCCGGAGCTTTGGTGTGGCGAGTG
CTAACTTCCCCCGCAAAAGTGCAGAGTCCACCAGAACCCTCGACAACCAA
CAAAAAGACAGGAGGGAGCAATGGCAACGGCAATGACGCAACAGCCGAGG
TGGGGGCAGCTCCAATTGTTCCACCTCCGATGGCTTTTCACGCCTCGTGC
GCAGCTTGCGTGCCTGGCAGCGGTAGCTTCAGTGACCCCAGCGGCGAGAA
GGGGAGTGGCGACGGTGGGGGCGGCATCGCGCGCGCGATGCTGATACACG
GAGGGTTGAACCAGACCTCGGAGTTGCTGGGAGACCTTTGGGCATTTTTC
CCGGGTCGGCTTTGCAGTGTTGAAGGAGAAGGAGGAGAACGGGGTGAGGG
AACAGCAGGAAACGGCGGTGTTGGTAGCGTGGGAAGCAACGGCGATGCCA
ACAGGATGGCCCGGTGGGAACGGCTTCTGCCAGAAGGCGAGGGGTAAGCA
CAGGCCGCTTTCAATCACCTCCCGGATCGCTGTGGCAGGTGTTTCTTTCC
AGTGAATAGTTTCACAAGCGGTTGTTTCATTTCAGGGTTTTGTGCAACGA
TCCAGCTTCAGGTTCGAACATCAAAGCTTTATTTGCATGGCACGCGCACC
GACTGCTGTATTTTTTCTGTGACCTGATTTAGCCGTAAGTCAAGCACTTT
CACCACGCAACGGCTCGGACACAAGTTTCCTGCAATGCTGGAGACCTCTC
CCTAGTCTACATCGTAGCTTCGCTGCACCACCGCATCGTACATGCGCATC
TTCGCTTACTCCCTGTACCAACTGCTCACATCCGCACGCGCTCCGAATGA
ACCGAAAGCCCCCCGCCAGCCGCGTACCACACGGCCACGCCTGTCAATGA
CGGAAGGAAAGTCGTTTTCGTCGGAGGCGGGAAGAGCTGGGGGTGTTCTA
CAATCTATCTGCTCGACGCCGTTGGCTTGATCTGGTCATCGTTCCAGGCT
GTCGGAGGCGTCGGTCTCTCGGAACAGCGGTGCTTGCACACGGCGGTCTC
GGTAACGGGTGTCGAAACGGAGAACAGCGATGACGGCGGGCAGCAACGGC
ATCGGCCACAACGAGAGGAGGATGTATGTCAACCGGATTCTTCCGCCGTT
GCTGTGCCTGACGCACACTCGTCGCCGCCGCCGATCCAAGGCGAGATCAA
CGAAACCTCAGCAGCGGAAACGCCTAGCGTGCAGCTGTGGGGGCCGGTAA
CAACAGCGGCAGGACCAGGGAGCACGCCATCGACATATCCCGATAACGGC
ACTGTATCACCGGCGGCGAAGAAGAAGGGAGGGGGCAAAGAAGGCGCGGC
GGGGTCAAAAACGTCTAACACGAAGGACGCCGACAAGACTAGCGGCAGCC
GAAGCAGCAGCGGCGACGATCGCCGGCAGGGGGAAGGCACCGACTGCCAT
GCCGGAGACGGCGAAGGCGGAAATCCGCTGGTGTTCGAGAGCATCCTTAT
CTTCGGAGGTGTGGTGGGGAAGGCCGCCGTCAGCGGGGTGAGTTGGGCAC
GATGGGCGAAGCGCGATGCGTGGCCGAGCGGGGTGTTGTGGCAAGGCTGT
GCCTGCCGGTAGAAACGGGAGTTGCGTAGGGATGATAATGTTTTCCTTGC
CTGTCCCTATTACATAGGAGTATGAAGGAACGGTGATGAACACATTTTGC
CTGCCTCGCGGCACGCCATCTGCTCTAATCTTTTTGAAAAATGTCTGCAT
ACTTTACGAAGCATAGTTGCATCGGCCGCAAGTGGCTAAATCTATCCCGG
TCGGTATTGCTCACAAGACCCGGTGGCATATCGCGTAGCGTTCACCAGCC
TTACGCCAAGAAACCATCCTAACCACTTGTTGCCGCCGTGGGAACGACGA
ACTTGCCTCGCAAGCAACACAACACGTTCAAAGCACTTTGTTGTCCATGG
ACCAAAGGAGACACGAACGACCTCTCCCAAACCCACACTCAGCTCTACCC
ATGGCTACGCGACGCCAGGCACAGTAAAGGGTCAGATAAACCACAACACT
AAAACCTTGACCACAAAACCGGCCTCATCCTCAACTACTGCTGTTGTGGT
TGTTACTCATCCTCAACTACTGCTGTTGTGGTTGTTTTCACCGTTGTCCT
CGTCTTCATCTTCGCACAGGATGCTATCGTCCTGCGTCACGACGGGACTG
TCGCGCCGCTCCGTCTTGCAAGAAATTTGCCTCCGAGCCCGGGTCCTCGG
TACAGCCACGCCATGGTCTCTGTGCCCGTCGGTGACAGTGCGGGCCACGA
CAACGGATGCGACGACGTCGGCGGCGGCGGCAACAGCAGCAGTGGCAGGA
GCGGTGGCAGCGGTGGCGGGAGGAATCTGGTGTTTTTGTTTGGTGGTTGT
CACGGGGACGGAACCAGAGGGGCGCCGGACGAGGCCTTCGTGCTAGACCT
TAGCGGCGGCGCGGCGGGAGGATGGGACGGGGGACGCGAAGGCCTCGCGG
ACGAGGAGGGAGGCGGCCAGGGTACCAGTGGCGACGATTCACAGGTGGGC
TGAACACTACGCACTTCGGTAGCGGTTCAGGCTGTACATCCGAAAACACG
AAAAAAAAACACACCTGCTTCCTTAATGGACCGTGTCTCCAGAAACACTG
GGTTTGGGATACCTCGGCTACCGACAATGTTTCACTGGAATACAAAGGGC
TGACCAACACTTCTTGCCAACACACCGAAGGTCTCCCTGTTCCCCCATGT
CCTTCCTGGCCCCTCTCCCCAGCCCGGCTTCCCCCACTGCCCTATATATG
TCGTCGGATAGGGCGATGTCGGAGAGGTTGTCTTAGAGTATCAAACGAAG
ACATCGACCCTCCTGTCTCTACTTTCTCTCTACGCTGCAGGCATGAAACC
ACACTCAAAAACGAAGCACCCGGAAACCTCGCTGAGTACCCGGGGACTGA
ACACATCGACATTCCATGAACCCGATGTTACTGGACGAAGTTCTCTGTTG
TTGATGGTGGATATTTTGGCGATGTTCGAACGGTGCAGAACGTATCGTGC
CGTTATTCCTGTGTCGCCTTCGCATGTCGAGGCCCTTTTGAACCTCCACA
TGGAAATGTACCACCGTCGATGGTTTCCATCTCACTGCTCCGGCGACATG
CTAACCATACGTCTTATGCCCGCAATCCTTTGCGAACGCGATCTTGATCG
GCGATAGGGTCTGGTTTCGACGACATTTTATCTGGAGCAGGACTGACTAC
ATGTTAGGGTCGCTGCAGCCGAGTCCCTCATTGCTGTTAATTGCAGTCAA
ATAGCTTTACGCGTGCACGTCCACATGTTCTCACTGCTAGGCCGGCACCA
TCAAGATATTCGACGGTGGAGACGTCTACACCGGGCAGCTGGACGCGAGC
GGCCAAAGGCAGGGCAAAGGACGGTGCGACTACGGGGTGGCGGTGGATGC
GGCAGGAGGAGGGCCGGCTGCTGTCACGGTGAGCGGCGGTGGTGGCGGCG
GCAGCGATGGGTCGTACTCGGGAGATTGGGATGCAGACAAGCCCCATGGA
CGGGGCGAGCGCCTGTATGCGGCTCCACGCAAGGGGGCAAAAGGTGGGGG
TGGCAGTGGTGGTGGGGGAGGAGACGGAGGAGACGGAGGAGAGGAAGAGG
AGGAGGAAGAGGAGGAGGAAGAGGTGCGGCTGCGGACGTCGATGAGGATA
TAGCCATTGTTGTAGCCGCCTTCGGCCCTGGGTGTCCCCCGCTGGCAAGC
TACCGCGGGGACTTCAAGCGAGGCGTCCGCGATGGCCACGGCGTCTGCTC
CTTCTTTACTGCCAGCTGCGGCGGGGGATGTTCGGTGGCCACGGGTAGCA
CGCTGGGTGCTACTAGTATCCCGACTATTCCGGACTCGTACGATGGGGAG
TGGGTGGGGGACCGACCTCTAGGGAGGGGGGTCCTGTCGCTACGAGCGGT
GGCGGCAGCACCGGCAGCACCAAGTAATCGCTTCAGCTCTTCGATTGCCG
GGTCGGGCTCGGGACTTGCGGGACGAGGTGGCGGCAGCGGCGGATCAATA
GAAGGCCTGTGGACGGAAGAGGGGCTAGCCCACGGTAGGGAAAAACTTCC
AGGCAAGGGAGGCGTCTACGAAGGGCAGTACCGGCTGGGGAAGCGGGAGG
GCCACGGCAGGCTGGACCTGCCGGACGGAAGCGAATATGAGGGTGAAGAG
AACAACGCCGTTTGCGGTTGAATGAAGAGTATTACGCGGAGGTACTTCGC
TTTTACGACGAACTAACGCTTTCGCTACCCATCGAGTGTGGCGGTGGCAA
GAGCGTTACGAGGTACCTGGCACGATTTTCAAGTCGAGCATGTTGTGATG
AGTATGAATCACCAGTGCCGCTAACACAGGCCAAGTACTCTTGTGCTTGG
TGTGGCCAGCGCTATTGTGTTGGCTTTCACGTCGCCCATAAAACACTGTG
AACAGAAGTCAAGGCTGGAACAGTGTTCCAAAGTATGGGCAAGTGTGCGA
GTTGATATTTTTCGTCGCTGTAGACCACTTGGCATCATGTGCGGAACGAC
CCTTTTCTACTTTCGCCACTTGAAGCTTGACCATCTTTTTGAACACTGCA
CCAGCGGAAGACATGTTTACGTCGGGAGCGGTTGAGTGCATCACAAAATA
CCTACAGTAGACTAGACGTACTTCGCGCAATGGGTTTGCCCCAAACAAAA
CTGTGACCGCCATCTTGGGCGTGTTTCTGTTGTCAACAGGGGCATGGAGA
AACGGACGGCAGAACGGTATCGGCACCTTTCGGTGCGGCGTTACGCGTCA
CGTCTACACCGGGAAGTGGGTTGGGGGGGTCCGATGCGGCAGAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7931:778..6773+

>mRNA_Ecto-sp13_S_contig7931.19220.1 ID=mRNA_Ecto-sp13_S_contig7931.19220.1|Name=mRNA_Ecto-sp13_S_contig7931.19220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7931:778..6773+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACGGGGGACGCGAAGGCCTCGCGGACGAGGAGGGAGGCGGCCAGG
GTACCAGTGGCGACGATTCACAGGCCGGCACCATCAAGATATTCGACGGT
GGAGACGTCTACACCGGGCAGCTGGACGCGAGCGGCCAAAGGCAGGGCAA
AGGACGGTGCGACTACGGGGTGGCGGTGGATGCGGCAGGAGGAGGGCCGG
CTGCTGTCACGGTGAGCGGCGGTGGTGGCGGCGGCAGCGATGGGTCGTAC
TCGGGAGATTGGGATGCAGACAAGCCCCATGGACGGGGCGAGCGCCTGTA
TGCGGCTCCACGCAAGGGGGCAAAAGGTGGGGGTGGCAGTGGTGGTGGGG
GAGGAGACGGAGGAGACGGAGGAGAGGAAGAGGAGGAGGAAGAGGAGGAG
GAAGAGGTGCGGCTGCGGACGTCGATGAGGATATAGCCATTGTTGTAGCC
GCCTTCGGCCCTGGGTGTCCCCCGCTGGCAAGCTACCGCGGGGACTTCAA
GCGAGGCGTCCGCGATGGCCACGGCGTCTGCTCCTTCTTTACTGCCAGCT
GCGGCGGGGGATGTTCGGTGGCCACGGGTAGCACGCTGGGTGCTACTAGT
ATCCCGACTATTCCGGACTCGTACGATGGGGAGTGGGTGGGGGACCGACC
TCTAGGGAGGGGGGTCCTGTCGCTACGAGCGGTGGCGGCAGCACCGGCAG
CACCAAGTAATCGCTTCAGCTCTTCGATTGCCGGGTCGGGCTCGGGACTT
GCGGGACGAGGTGGCGGCAGCGGCGGATCAATAGAAGGCCTGTGGACGGA
AGAGGGGCTAGCCCACGGTAGGGAAAAACTTCCAGGCAAGGGAGGCGTCT
ACGAAGGGCAGTACCGGCTGGGGAAGCGGGAGGGCCACGGCAGGCTGGAC
CTGCCGGACGGAAGCGAATATGAGGGGGCATGGAGAAACGGACGGCAGAA
CGGTATCGGCACCTTTCGGTGCGGCGTTACGCGTCACGTCTACACCGGGA
AGTGGGTTGGGGGGGTCCGATGCGGCAGAGGT
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