mRNA_Ecto-sp13_S_contig7905.19184.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7905.19184.1
Unique NamemRNA_Ecto-sp13_S_contig7905.19184.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 3.110e-110
Identity = 183/312 (58.65%), Postives = 220/312 (70.51%), Query Frame = 1 
Query:  337 QDATTAKKEEPERSLTIKVRDQTGEETYFKVRSTTVMSKIANIYCSMKGVSMTAMMFALDGHLVGHYETPASLELEDGDQIDARLIQSGGKPVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQAST-----SEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNLNGSSHD 1257
            +D T +  +E E  ++  ++  TG++   +   +  +  +       +G+          G       T     + +G    A L+ S  KPVILLYP  P+D  V +ELSPLW FS+LYPK     L+Q +      S+A +AGGQ CKWNVHASP GSL+DLSTGREYPYLFWEADSSDGRV+RSFGLD +RS CVAG+AAGVFLD ALERLGLN+RERCDMVT WLPQLESS FNVIYFV+V RYE+AARLTI P PDV IR+FMAFRG  AYDAELDTAK+E+LR+PAR+GFVAVEWGGMNLNG SHD
Sbjct:  144 EDTTDSVADEDENEISFSIKTLTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSV--AHLVLSLRKPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSHD 453
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.380e-49
Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:  973 MRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNLNGSSHD 1257
            MRERCDMVTYWLPQLESS FNVIYFV+V RYEKAARLTI PAPDV IRIFMAFRG DAYD ELDTAKMEDLRAP RKGFVAVEWGGMNLN  SHD
Sbjct:    1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLNRVSHD 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: D7FN69_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN69_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.660e-39
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:  721 QQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLE 1020
            +Q S  EA +A GQ C+W VHA+PDGSL D+ST REYPYLFWEADS+DG V  +FGL+ T S CVAG+ AG+FLD ALERLGLN+RERCD++TYWLPQLE
Sbjct:   59 RQTSGYEAIVASGQHCEWIVHANPDGSLTDISTSREYPYLFWEADSTDGLVCGNFGLEKTPSFCVAGNDAGLFLDVALERLGLNVRERCDVITYWLPQLE 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: A0A1Y4WJV0_9FIRM (Uncharacterized protein n=1 Tax=Flavonifractor sp. An10 TaxID=1965537 RepID=A0A1Y4WJV0_9FIRM)

HSP 1 Score: 147 bits (372), Expect = 6.960e-37
Identity = 88/213 (41.31%), Postives = 117/213 (54.93%), Query Frame = 1 
Query:  601 GGKPVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            G KPVI LYP    +  VTLEL     F++ YP                   G    W V A+PDG+L D ++GR Y  LFWE     G + R F  D++   CVAG+    FL+ AL RLGL  RE  + + YWLP++E +P+N+I F   + Y  AA LTI P+PD +IR+FM ++G +    E+     ++L APAR GF AVEWGG  L
Sbjct:   24 GAKPVIYLYPEEETEVTVTLELD--GTFTSTYPD---------------YGEG----WTVTAAPDGTLTDPNSGRTYYCLFWE-----GIIDRQF--DLSAGFCVAGEDTAAFLEDALARLGLTEREANEFIIYWLPRMEGNPYNLISF-QTDAYTDAAELTIDPSPDTLIRVFMTWKGLEQ-PVEIPA---QELTAPARTGFTAVEWGGAEL 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: A0A7K3KJH3_9ACTN (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A7K3KJH3_9ACTN)

HSP 1 Score: 144 bits (364), Expect = 1.060e-35
Identity = 86/220 (39.09%), Postives = 120/220 (54.55%), Query Frame = 1 
Query:  580 DARLIQSGGKPVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            D R   S  KPVI LYP       VTLE+      S +YP          ++++    GG    W V A PDG+L DLS+GRE  YLFWE D+        F  D ++  CV+GD    FL+ AL +LGL  RE  D +TYWLP+++ +P+N++ F   + Y + A L I P PD +IR+ MA+R  +    +++    ++L APAR GF  VEWGG  +
Sbjct:   18 DVRKDPSNEKPVIYLYPEQASVIDVTLEVEE--SLSCVYPA--------FASAQPTDTGGT---WRVFAQPDGTLTDLSSGRELGYLFWEGDAG-------FSPDFSQGFCVSGDDMRAFLEDALSKLGLTDREAADFITYWLPRMQENPYNLVSFQG-DAYARVACLGIDPEPDTVIRVQMAWRPLEV-PVQIEP---QELTAPARNGFTVVEWGGTQV 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: A0A8H8JTL5_9AGAM (Polyubiquitin-C n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JTL5_9AGAM)

HSP 1 Score: 150 bits (378), Expect = 2.260e-35
Identity = 115/333 (34.53%), Postives = 154/333 (46.25%), Query Frame = 1 
Query:  385 IKVRDQTGEETYFKVRSTTVMSKIANIYCSMKGVSMTAMMFALDG---HLVGHYETPASLELEDGDQIDARLIQSGGKPVILLYPSVP-LDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFG--------------LDVTRSSCVAGDAAGV-------FLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRG-----------------------TDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            + +R  TGEET  K+    ++S++ +I  ++ G+   A  FAL G   H +   +T     + DGD+I A + Q GGKPVI L+P  P LD  + L L   W FSALYP  P   L   ST+      GQ   W V A PDG+L D  T RE  YLFWEA +         G               D  R    + DA  +       ++D AL  LGL+   R   +TYWLP L+   F  + F+  ++YE AA + I PAPDV+ R+FM F+G                       TD    +LD AK E L       F  +EWGGM +
Sbjct:  108 VTIRRATGEETILKISLDILVSELLSIVGTI-GI-YKAGHFALIGPDCHRLSANKTLRQQGVNDGDEIYAVMEQIGGKPVIYLFPPTPTLDIRLELGLVESWSFSALYPAAPI--LTPVSTTH-----GQSVSWTVDAKPDGALFDRHTQREISYLFWEAHTQPSAPISPAGSRACTPTIPGNAKTFDPARYQISSSDAVLLPFDKITSYIDDALLSLGLHTEARTSFITYWLPSLQRHSFIALCFLPQSQYEAAAPMKIEPAPDVVSRVFMVFKGVEKSQLGAWSEAHTRASMNPSMWTDIVGIKLDMAKDEKL-------FRVLEWGGMEI 424
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: A0A7X5D8X7_9CLOT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7X5D8X7_9CLOT)

HSP 1 Score: 140 bits (352), Expect = 2.390e-34
Identity = 84/208 (40.38%), Postives = 107/208 (51.44%), Query Frame = 1 
Query:  607 KPVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGG 1230
            KPVI LYP  P    V LEL         YP         A   E + + G    W V A PDG+L DL  GREY YLFWE           +  D  R  C+AG     FL+ AL +LGL  +E  D +TYWLPQ++ +P+N+I F     Y++ ARLT+ P PD +IR+FMA+   D    E    + + L A  R+GF  VEWGG
Sbjct:    5 KPVIYLYPKEPCVVEVALELE--GTVGMAYP---------AFNEERSASEGS---WKVQADPDGTLSDLRVGREYGYLFWEGVGD-------WEPDFDRGFCIAGADTAEFLEDALRQLGLTDKEADDFITYWLPQMQGNPYNLIAFQG-GAYDRTARLTVDPQPDTIIRVFMAWMRLD----EPVVVEPQVLSAAPREGFAVVEWGG 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: A0A096B0K5_FLAPL (Uncharacterized protein n=19 Tax=Eubacteriales TaxID=186802 RepID=A0A096B0K5_FLAPL)

HSP 1 Score: 140 bits (352), Expect = 4.020e-34
Identity = 83/212 (39.15%), Postives = 116/212 (54.72%), Query Frame = 1 
Query:  607 KPVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNLN 1242
            KPV+ LYP   ++  VTL+       ++ YP               A   G    W V A PDG+L + +TGREY  LFWE     G     +  D +   CVAG+    FL+ AL+RLGL  RE  + + YWLP+LE +P+N++ F   + Y  +A LTI PAPD +IR+F+A++G DA   E++    + L AP R GF AVEWGG  ++
Sbjct:   32 KPVLYLYPEEEMEVTVTLDFD--GTLTSTYP---------------AYGDG----WTVTARPDGTLTNPATGREYYCLFWE-----GITEAEY--DFSAGFCVAGEDTAAFLEDALDRLGLTEREADEFIIYWLPKLEGNPYNLLSF-QTDAYTDSAALTIDPAPDTLIRVFLAWKGLDA-PVEVEP---QTLTAPERTGFTAVEWGGAEVD 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: A0A096CD36_FLAPL (Uncharacterized protein n=14 Tax=Eubacteriales TaxID=186802 RepID=A0A096CD36_FLAPL)

HSP 1 Score: 139 bits (351), Expect = 5.630e-34
Identity = 84/211 (39.81%), Postives = 113/211 (53.55%), Query Frame = 1 
Query:  607 KPVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            KPV+ LYP    +  VTL+       ++ YP                   G    W V A PDG+L D +TGREY  LFWE     G     +  D +   CVAG+    FL+ AL+RLGL  RE  + + YWLP+LE +P+N++ F     Y  +A LTI PAPD +IR+F+A++G DA   E++    + L APAR GF AVEWGG  +
Sbjct:   32 KPVLYLYPEEETEVTVTLDFD--GTLTSTYPD---------------YGDG----WTVTARPDGTLTDPATGREYYCLFWE-----GITEAEY--DFSTGFCVAGEDTAAFLEDALDRLGLTGREADEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGLDA-PVEIEP---QTLTAPARTGFTAVEWGGAEV 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Match: A0A1Q6RH43_9FIRM (Uncharacterized protein n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1Q6RH43_9FIRM)

HSP 1 Score: 139 bits (349), Expect = 8.820e-34
Identity = 83/215 (38.60%), Postives = 116/215 (53.95%), Query Frame = 1 
Query:  595 QSGGKPVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGGQLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSSCVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVNRYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGFVAVEWGGMNL 1239
            Q+  KPVI LYP    +TAVT++L      +  YP               A   G    W V A PDG+L D   G+ Y YL+WE        + +   D ++  CVAG     FL+ AL +LGL  RE  + + YWLPQ++ +P+N+I F   +RY +AA+LTI PAPD ++R+FMA++  D +  E+     + L AP R GF AVEWGG  +
Sbjct:   24 QAAAKPVIYLYPEE--ETAVTVKLDYAGALTCTYP---------------AYGNG----WAVTACPDGTLTD-DAGQTYSYLYWEG-------TDTIAYDFSQGFCVAGTDTAAFLEDALAQLGLTRREANEFIVYWLPQMQENPYNLIAFQS-DRYTQAAKLTIDPAPDTLLRVFMAWKPLDKF-MEIPA---QSLTAPERTGFTAVEWGGCRV 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7905.19184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI3.110e-11058.65Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FJP3_ECTSI3.380e-4989.47Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
D7FN69_ECTSI7.660e-3970.00Ubiquitin family protein n=1 Tax=Ectocarpus silicu... [more]
A0A1Y4WJV0_9FIRM6.960e-3741.31Uncharacterized protein n=1 Tax=Flavonifractor sp.... [more]
A0A7K3KJH3_9ACTN1.060e-3539.09Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
A0A8H8JTL5_9AGAM2.260e-3534.53Polyubiquitin-C n=1 Tax=Ceratobasidium sp. AG-Ba T... [more]
A0A7X5D8X7_9CLOT2.390e-3440.38Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A096B0K5_FLAPL4.020e-3439.15Uncharacterized protein n=19 Tax=Eubacteriales Tax... [more]
A0A096CD36_FLAPL5.630e-3439.81Uncharacterized protein n=14 Tax=Eubacteriales Tax... [more]
A0A1Q6RH43_9FIRM8.820e-3438.60Uncharacterized protein n=3 Tax=Oscillospiraceae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7905contigEcto-sp13_S_contig7905:1957..6866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score356.7
Seed ortholog evalue1.5e-95
Seed eggNOG ortholog2880.D7G4B4
Model size2506
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
Cds size1251
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7905.19184.1prot_Ecto-sp13_S_contig7905.19184.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7905 3203..6857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464061.4732697-UTR-Ecto-sp13_S_contig7905:1956..32021681464061.4732697-UTR-Ecto-sp13_S_contig7905:1956..3202Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7905 1957..3202 -
1681464061.5835986-UTR-Ecto-sp13_S_contig7905:6857..68661681464061.5835986-UTR-Ecto-sp13_S_contig7905:6857..6866Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7905 6858..6866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464061.4841125-CDS-Ecto-sp13_S_contig7905:3202..33291681464061.4841125-CDS-Ecto-sp13_S_contig7905:3202..3329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7905 3203..3329 -
1681464061.4950037-CDS-Ecto-sp13_S_contig7905:3672..38741681464061.4950037-CDS-Ecto-sp13_S_contig7905:3672..3874Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7905 3673..3874 -
1681464061.5064278-CDS-Ecto-sp13_S_contig7905:4070..42601681464061.5064278-CDS-Ecto-sp13_S_contig7905:4070..4260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7905 4071..4260 -
1681464061.5155869-CDS-Ecto-sp13_S_contig7905:4781..51501681464061.5155869-CDS-Ecto-sp13_S_contig7905:4781..5150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7905 4782..5150 -
1681464061.538572-CDS-Ecto-sp13_S_contig7905:5426..54941681464061.538572-CDS-Ecto-sp13_S_contig7905:5426..5494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7905 5427..5494 -
1681464061.5546656-CDS-Ecto-sp13_S_contig7905:6057..62311681464061.5546656-CDS-Ecto-sp13_S_contig7905:6057..6231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7905 6058..6231 -
1681464061.5657268-CDS-Ecto-sp13_S_contig7905:6736..68571681464061.5657268-CDS-Ecto-sp13_S_contig7905:6736..6857Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7905 6737..6857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7905.19184.1

>prot_Ecto-sp13_S_contig7905.19184.1 ID=prot_Ecto-sp13_S_contig7905.19184.1|Name=mRNA_Ecto-sp13_S_contig7905.19184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=417bp
MTSLRILQKKGELLQEEKLIQLRRQEALPLGKRKRAPVAAASPPQAPDPP
ENSETSSSSGARGRAKRKLSEQPEDEQSRHSNGTERSSRLPAARETSYED
GRSAVDTQQQDATTAKKEEPERSLTIKVRDQTGEETYFKVRSTTVMSKIA
NIYCSMKGVSMTAMMFALDGHLVGHYETPASLELEDGDQIDARLIQSGGK
PVILLYPSVPLDTAVTLELSPLWRFSALYPKPPSSKLQQASTSEAALAGG
QLCKWNVHASPDGSLEDLSTGREYPYLFWEADSSDGRVSRSFGLDVTRSS
CVAGDAAGVFLDGALERLGLNMRERCDMVTYWLPQLESSPFNVIYFVDVN
RYEKAARLTIAPAPDVMIRIFMAFRGTDAYDAELDTAKMEDLRAPARKGF
VAVEWGGMNLNGSSHD*
back to top

mRNA from alignment at Ecto-sp13_S_contig7905:1957..6866-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7905.19184.1 ID=mRNA_Ecto-sp13_S_contig7905.19184.1|Name=mRNA_Ecto-sp13_S_contig7905.19184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4910bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7905:1957..6866- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGAACTCATGACGAGTCTCAGGATCCTGCAAAAGAAAGGAGAGCTTCT
TCAAGAGGAAAAGCTTATTCAACTACGCCGTCAAGAGGCTTTGCCGCTCG
GCAAAAGGAAAAGGGCGCCCGTGGCTGCTGGTGAGCCATATATTTGGGCA
CAGAGAGAGAGAAAATTATCCACAGCCATGTGCTCTCCATGAGGAATTGA
GTGGGGAGGTGAAGGCATGGGCGTAATGTCGCAAGCATTACCGAGAGCAG
GAGTGTGCATACGAAGCGTGTCTTGCCGCCGAGGGGTTGAAGCGTGCAGC
AGTGGCAAGAGACGGCGCAGACGGGAGCCTTGGGCGACATGTCCCATACG
AAGTTGTGTTGGCCAGGTTAACGTTGCCAAAACGACCGCTTTCTCGCTGT
TCTTGACGTGAACTAGGTTAGACCTGGTCTCAGGCCCAACGAAACAAACG
GATGCGAATCGGTGTTGGGTGAAACATCTTTTGTGAAGTTTACTTTCATC
GAGATGAAGTCATGTAACCAGCCGTGAAGCTTCGTGGGAACAGCTGGGTA
CGAATCCTTTCGGCGTCAGTTATGCACATGCGTGTTCTCTCTTGCTTTTC
GTCGAACCTGTGTGGGTGTTTTTGTTTTTTGAAAGCATCGCCACCACAGG
CACCAGACCCGCCGGAAAATTCCGAGACATCGAGTTCATCTGGAGCTCGC
GGTCGGGCGAAAAGGAAATTATCTGAACAACCGGAGGACGAACAATCACG
GCACTCCAACGGGACAGAGAGGTCATCAAGATTGCCAGCGGCCAGGGAAA
CGAGCTACGGTGGGTTCCTGGCCTTTCCAATTCAGCATGGGCGGGTAAAT
GCCAATTCAACCTCTACAGTATCGCTTGCGCCAGCGTCTCCCGCTTTCTC
TCCTCCCCTCTCATGCGTGTACTTTGGATGCAGTCTCCCATCATCAATTT
TTAGTCATGGGAGTCCCTGTTGCGAACATGTTACTCGTCTTGCTAAAGTT
TGCTTCATCGCTGTGGTTGTGACCTACTCCATCTCTCGCGAACACGCATC
ATATCTACGCATGGAGTGGTCAGTGGCGAGTGCCTCACCACCCAGCACAC
TCGCGCCGTGTGCTAGTTGCCTTGGTAGCCGGGCGATGAGCTCGCACCGC
GAGGTGTGCAGTGTTCCTGGCTTGCTCTGGCTTACCCGTCCTGTTGTGTA
TGCAGCAGCACACTGTGGCCCACTTGCACAGTTTGATTGGCAAGGTGAGT
GTCGCCGTGCACGCCGGAAGCACTCGTGTGAGCCTGAAGATTGGCGATTA
GGTGAACTTGCGAGAGCTCTCAGCTGCTGCGTTGCTTTGCCTCCTATGCG
GGGCAAACTCTCATGTTTTCAGAAGATGGGCGGAGCGCGGTGGACACGCA
ACAGCAGGATGCGACAACGGCAAAGAAGGAGGAGCCGGAGGTGAGGACGA
GCATGGGTGATAGGACCATGAAGTGGACCACTGCATACCGATCAATGAAA
ACGCAAATAAGCCAGGAATCTTTGATGTGTGTTCTGTTGTGGAAGCTGAG
ACTCTCCTGACGAAAATTGAAAAGCGGCCTGGGAAGTAGCGTGGTTGTGA
GATATAGAGCAGGAAGTAGGACAACTGTACTGCTGAACACCGGCACGAAC
TCATAGTCCAAAACCTTCGCCGTGCTCTCCTTTGATGTTCACGCGTTTGT
TTTCGCCGTTCGGAAGCGTTCCCTCACAATTAAAGTTCGAGACCAAACTG
GCGAGGAAACGTACTTCAAAGTGCGCTCCACCACTGTAATGAGCAAGATC
GCAAACATATATTGTAGCATGAAGGGAGTCTCGATGACAGCAATGATGTT
CGCGCTAGATGGACACCTAGTAGGGCACTACGAGACTCCGGCTAGTCTCG
AACTTGAAGATGGAGACCAAATCGACGCCAGGCTTATTCAGAGCGGGGGA
AAGCCCGTAATCCTCCTGTACCCGTCAGTCCCCCTCGATACCGCTGTCAC
GCTGGAGCTGAGCCCGCTCTGGAGATTCTCCGCTCTGTACCCGAAGCCCC
CGTCAAGCAAGTTGCAGCAGGCATCAACTTCGGAGGTATGACTGCAATTA
CGTTTTTTTCCATTTCGGAAAACCAAAGAGGCCCTGAGCTTGGACGTCCG
TGTGCAAGACAAGCCTGCGTATACCTGGTTTCTCTATCGAGTTGGGGTCT
CCCGATAATCGAACTCCCTGGTGCCGACTGTGTTTTGCCGATGCACGTCA
AGCATTACAGTTGACAGACAGTGCATATCTACTTGATTGATGGTAGAAAC
AGGCACACCCCTCTGCGTTTTCCCCTATTCGACCTGTCGGATATATCGAT
AATCACAGCACTCTTCCCTATTCTGTTGGTCGCGTTGTGTTGTCTGTGTA
GACGTTTTGAACACTTTGATGGCCGGTTTCGGTGGGAAATAGTGTTTTGG
GCTGGCGGTCAACTTAGCGTTCCCGAATTCCGTCCTTCGCCAAAATTTCT
TCGGATGTTTGGTTGCCGTGGCGAGAGTAGCACACCCTGTACGGCACATC
AACATAACCATGCATGCGTCCGTATTCGGTGGCTCTCCGTCATGACGTGC
ATTCAGGCCGCCTTGGCTGGTGGCCAGCTGTGCAAATGGAACGTCCACGC
CAGTCCCGACGGGTCTCTTGAAGACCTCAGCACCGGCAGGGAGTACCCGT
ACCTCTTCTGGGAAGCAGATTCTTCCGACGGCCGAGTTTCCCGGAGCTTT
GGGTTGGACGTGACGAGGTCGTCTTGCGTGGCAGGTGACGCCGCAGGTAC
GATACGCTGCTGATTGGCTCTGTCTGCGAACGTCCCTACCAAGACACATT
CCACGCCTGCTTCCGATCTCCCCACACGCTGCGGCAACACACAACGTTGT
CGTAGCTGTTTATCCCATTGTTGACACTCGTCACCCCATCCGCTACTATT
CTCCACTACTGTTGCTTTTTCCTGATCCACTTCCTTCGATAGGCGTGTTT
CTTGACGGTGCCCTGGAGCGCCTTGGGCTCAACATGCGGGAGCGCTGCGA
TATGGTGACCTACTGGCTGCCGCAGCTGGAGTCTTCGCCCTTCAACGTCA
TCTACTTTGTAGACGTAAATCGGTACGAGAAGGCAGCCCGTTTGACCATT
GCGCCTGCTCCGGATGTCATGATCCGCATCTTCATGGCCTTCAGGTGGGT
CGTGAGTACCTGGGCACGTGCTTTTTCAATTTTGCTGGTGATTGGTGCTT
GGTTAAGCCTTGTTGTGCTCAAGGTAAGGATCCATCTTTCATGTTCTCAA
CATCACCGGTGGCCTCTATTGGAACTGTAGATCGCTAGTTAGTGTACTTC
AACCCGTACCCTGAAATTTCCACATGTCACACGCTTCAATGCTCCAATGA
AGGCAGGTCGTGTGCCGCCGTCTTCTATCCCCCAAACCCTTGAACAAGTA
AACAGCATTATCTCATCGTTCCAGATCTCATCTCCTCACGTAGTATTTGC
ACGCTCTCGGTGCACGGTATTGCGATTGTAATCGCAGGGGCACCGATGCG
TACGACGCCGAGCTGGACACCGCCAAGATGGAAGACCTACGAGCGCCTGC
AAGGAAGGGATTTGTTGCTGTCGAGTGGGGAGGCATGAACCTCAACGGGT
CCTCGCACGACTAGGAGGTCAACTCATCTGCCTGTCTTCTGTGTAAATTC
TGCTGCTGATAGGGTCGAGCACCGACAGCGACCAGAGCTACAACTGGGAA
AGTTGGTCTTCTTCCCGCCTGTGGCTGCATACATGTGGTTTAGGGACGAA
AACGTCGCAGTCGAAGACGTCATGAAGTACATTGAAGTAACTGGGTCCAT
GGCCGTCCAGACAAGAGCTGGCCACGATGAGGAAGAAGCCTCCCGTGCGT
GTGCCATGCTCGAGCGTGCTACCACAACGCTGGTAGACAACAACGCTTAA
TCTCGCCTGGTCGACTGGTTCTGATCCACGGTGTACAGGCGCGGAATTGT
TACGAAATGAGATTGACCTAGGCTTTGGGCGATCCACACCTCGCGTCGCC
CAGCAGGATATGGACCCCGTACAAGCCGTCTCGTTATTTCTTCGAGGTGA
TCGAGTTCGGACGTCGTCTCGCCTTCACCGGTTTCGCGGTGTTTGCGTTT
CCGGGCAGTGCGGCACAGATCGCTGTCGTTATCTTGCTGGCGGTCGGGCT
CTTGTTTGTCTCCGAGTCCTTGTCTCCGTTTCACAGCAGTATCGACATGG
ATCTGTACCGGTGGGGGAAAGGAGTCACGCTCGGTAGCATGCACGTTGCC
CCGCATCTGGAGGTGGACGTGTCGCGTGAAACACGGATACGATGTCGGCG
TTCGCCTGGGTTCTGATCGCTGCGAACGTATTCATGGTGGTGGCATAAAG
GCCCATTCGGCCCTCATGGTTCGAGGGTGACGGAGAGCGAACGGATCAGA
CGATGAGTCTTGGGAGTCACCAACTGAGTTGCTGAATCTGGAACCGAAGC
TCCTTTTGGAACCACCTTCTTCGCTTTCAGCGCAACGCTCACATTTGTTT
TGTTTCAAGTAGCATCCCTGGGCTACCTGTAAGACAAATATTCTGGCATC
TGTCTTTGTCTCGAATGGTGATGATAGCGAAACTTAAAAGTCCCCTGGTG
GAAGCTAGAAGATGTACGAGAAGGCTCCCCAATATTATCGTTGATAAACG
AGGGCAAGCACCTGCGAGGCAAAACAGTTCCCGCTGGACTCACCCGAGAG
ACAATCCTCACAGGGGATACGGACAGATGTCAAGAACTCACGGCTTGGGG
TTACGCCAGGCCGTACAGATGATGTGGTAGTGTGGGGGACATTCACATCT
ACGAAGCTGTTTGGTCGCGGTTGATGACAGTATTCTTGTTTTCATTCAAT
GATTGTGCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7905:1957..6866-

>mRNA_Ecto-sp13_S_contig7905.19184.1 ID=mRNA_Ecto-sp13_S_contig7905.19184.1|Name=mRNA_Ecto-sp13_S_contig7905.19184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7905:1957..6866- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGTCTCAGGATCCTGCAAAAGAAAGGAGAGCTTCTTCAAGAGGA
AAAGCTTATTCAACTACGCCGTCAAGAGGCTTTGCCGCTCGGCAAAAGGA
AAAGGGCGCCCGTGGCTGCTGCATCGCCACCACAGGCACCAGACCCGCCG
GAAAATTCCGAGACATCGAGTTCATCTGGAGCTCGCGGTCGGGCGAAAAG
GAAATTATCTGAACAACCGGAGGACGAACAATCACGGCACTCCAACGGGA
CAGAGAGGTCATCAAGATTGCCAGCGGCCAGGGAAACGAGCTACGAAGAT
GGGCGGAGCGCGGTGGACACGCAACAGCAGGATGCGACAACGGCAAAGAA
GGAGGAGCCGGAGCGTTCCCTCACAATTAAAGTTCGAGACCAAACTGGCG
AGGAAACGTACTTCAAAGTGCGCTCCACCACTGTAATGAGCAAGATCGCA
AACATATATTGTAGCATGAAGGGAGTCTCGATGACAGCAATGATGTTCGC
GCTAGATGGACACCTAGTAGGGCACTACGAGACTCCGGCTAGTCTCGAAC
TTGAAGATGGAGACCAAATCGACGCCAGGCTTATTCAGAGCGGGGGAAAG
CCCGTAATCCTCCTGTACCCGTCAGTCCCCCTCGATACCGCTGTCACGCT
GGAGCTGAGCCCGCTCTGGAGATTCTCCGCTCTGTACCCGAAGCCCCCGT
CAAGCAAGTTGCAGCAGGCATCAACTTCGGAGGCCGCCTTGGCTGGTGGC
CAGCTGTGCAAATGGAACGTCCACGCCAGTCCCGACGGGTCTCTTGAAGA
CCTCAGCACCGGCAGGGAGTACCCGTACCTCTTCTGGGAAGCAGATTCTT
CCGACGGCCGAGTTTCCCGGAGCTTTGGGTTGGACGTGACGAGGTCGTCT
TGCGTGGCAGGTGACGCCGCAGGCGTGTTTCTTGACGGTGCCCTGGAGCG
CCTTGGGCTCAACATGCGGGAGCGCTGCGATATGGTGACCTACTGGCTGC
CGCAGCTGGAGTCTTCGCCCTTCAACGTCATCTACTTTGTAGACGTAAAT
CGGTACGAGAAGGCAGCCCGTTTGACCATTGCGCCTGCTCCGGATGTCAT
GATCCGCATCTTCATGGCCTTCAGGGGCACCGATGCGTACGACGCCGAGC
TGGACACCGCCAAGATGGAAGACCTACGAGCGCCTGCAAGGAAGGGATTT
GTTGCTGTCGAGTGGGGAGGCATGAACCTCAACGGGTCCTCGCACGACTA
G
back to top