mRNA_Ecto-sp13_S_contig78710.19145.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78710.19145.1
Unique NamemRNA_Ecto-sp13_S_contig78710.19145.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78710.19145.1 vs. uniprot
Match: A0A6H5L3A6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.490e-35
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 3 
Query:  213 HWNKVYSSGEDDSGQQAVSEWHVEGDVFVEEVERLLPAGGPSATTHTATGREEVAVLNVGCGTSTLWK 416
            +WNKVYSSGEDDSGQQAVSEWHVEGD FVEEVERLLPAGGPSAT HTA GREE AVLNVGCGTSTLW+
Sbjct:   59 YWNKVYSSGEDDSGQQAVSEWHVEGDAFVEEVERLLPAGGPSATKHTAAGREEAAVLNVGCGTSTLWE 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78710.19145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3A6_9PHAE2.490e-3591.18Methyltransf_11 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78710contigEcto-sp13_S_contig78710:20..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size416
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.050713-UTR-Ecto-sp13_S_contig78710:19..491681464058.050713-UTR-Ecto-sp13_S_contig78710:19..49Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78710 20..49 +
1681464058.0716562-UTR-Ecto-sp13_S_contig78710:403..4351681464058.0716562-UTR-Ecto-sp13_S_contig78710:403..435Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78710 404..435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.061785-CDS-Ecto-sp13_S_contig78710:49..4031681464058.061785-CDS-Ecto-sp13_S_contig78710:49..403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78710 50..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78710.19145.1prot_Ecto-sp13_S_contig78710.19145.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78710 50..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78710.19145.1

>prot_Ecto-sp13_S_contig78710.19145.1 ID=prot_Ecto-sp13_S_contig78710.19145.1|Name=mRNA_Ecto-sp13_S_contig78710.19145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MVPPPPMTAFLAAGHRTFPPKTLFPMVVQGSTQRISSGWSGGTRRPLRIS
MQDFSSSAYWNIGTKCIPREKMIAVNRQCRSGMLRATCLLRRSNDYSLLG
VHLLLRILLLVGRRLQS*
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mRNA from alignment at Ecto-sp13_S_contig78710:20..435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78710.19145.1 ID=mRNA_Ecto-sp13_S_contig78710.19145.1|Name=mRNA_Ecto-sp13_S_contig78710.19145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=416bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78710:20..435+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGCTTCCTTCCATAGCCGCGAATACTATGGTCCCACCTCCACCAAT
GACGGCGTTCCTTGCAGCAGGCCATCGGACTTTTCCTCCCAAAACCCTAT
TTCCGATGGTTGTCCAGGGCAGCACTCAAAGAATCAGCAGCGGATGGAGC
GGCGGGACACGCCGCCCGCTGCGGATAAGCATGCAAGACTTTTCGTCGTC
GGCGTATTGGAACATTGGAACAAAGTGTATTCCTCGGGAGAAGATGATAG
CGGTCAACAGGCAGTGTCGGAGTGGCATGTTGAGGGCGACGTGTTTGTTG
AGGAGGTCGAACGATTACTCCCTGCTGGGGGTCCATCTGCTACTACGCAT
ACTGCTACTGGTAGGGAGGAGGTTGCAGTCCTGAACGTCGGCTGCGGGAC
GAGCACATTGTGGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78710:20..435+

>mRNA_Ecto-sp13_S_contig78710.19145.1 ID=mRNA_Ecto-sp13_S_contig78710.19145.1|Name=mRNA_Ecto-sp13_S_contig78710.19145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78710:20..435+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCCACCTCCACCAATGACGGCGTTCCTTGCAGCAGGCCATCGGAC
TTTTCCTCCCAAAACCCTATTTCCGATGGTTGTCCAGGGCAGCACTCAAA
GAATCAGCAGCGGATGGAGCGGCGGGACACGCCGCCCGCTGCGGATAAGC
ATGCAAGACTTTTCGTCGTCGGCGTATTGGAACATTGGAACAAAGTGTAT
TCCTCGGGAGAAGATGATAGCGGTCAACAGGCAGTGTCGGAGTGGCATGT
TGAGGGCGACGTGTTTGTTGAGGAGGTCGAACGATTACTCCCTGCTGGGG
GTCCATCTGCTACTACGCATACTGCTACTGGTAGGGAGGAGGTTGCAGTC
CTGA
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