mRNA_Ecto-sp13_S_contig787.19140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig787.19140.1
Unique NamemRNA_Ecto-sp13_S_contig787.19140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig787.19140.1 vs. uniprot
Match: A0A6H5KXZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ2_9PHAE)

HSP 1 Score: 400 bits (1027), Expect = 2.730e-121
Identity = 290/385 (75.32%), Postives = 298/385 (77.40%), Query Frame = 1 
Query:  448 PAKQPRGLYRRVSGLVGRAVGLLT--------RVASAAAEDDDLEAEGGAVARGEESTAVEPEEGNEGTPAAAAADPPVGAAGVSSTPGRGXXXXTSTPFPSSRHGGVGGGADVNPTKAAFFSPGVGQRREGLRRQTRRGGAGAGTKGNAISKLPSSLRLSSSARRASGDGLGSTSLRGSTAGDGGXXXGRAEELGLPPVPPFYKLEAASPAPAGRVGDDEGEASHEHGGIGVARSLRSGRVIDGVVG-VG-GGAAPAAAAVGSSDISGRATDGKIKRSGKGPRARSGHLGADDMQXXXXXXXXXXXXXXXXXXXXXXXXX-------LTATERRDLYRSLARGPYLSAWESLYLLRQLNSPEANALKERCLKKYKARVAENTAA 1551
            PAKQPRGLYRRV+GLVGRAVGLLT        R+AS AAED+DLEA  GA ARGEES                                  XXXX     PSSRHGGV GGA++  TKAAFFSPGVGQRREGLRRQTRRGGAG GTKGNAISKLPSSLRLSSSARRASGDGLGSTSLRGSTAGDG XXX  AEELGLPPVPPFYKL AASPAPAGRVG DEGEA HEHGG GVARSLRSGRV DGVVG VG G        VGSS I+GRA DGK KRSGKGPRAR+GHL A+DMQ XXXXXXXXXXXXXXXXXXXXXXXX       LTATERRDLYRSLARGPYLSAWESLYLLRQLNSPEAN LKERCLKKYKARVA NTAA
Sbjct:   40 PAKQPRGLYRRVTGLVGRAVGLLTPGRPRAPPRIASTAAEDNDLEAAAGAAARGEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSSRHGGVDGGANL--TKAAFFSPGVGQRREGLRRQTRRGGAGVGTKGNAISKLPSSLRLSSSARRASGDGLGSTSLRGSTAGDGXXXX-XAEELGLPPVPPFYKLGAASPAPAGRVGGDEGEAHHEHGGTGVARSLRSGRVTDGVVGGVGVGXXXXXXXVVGSSGIAGRAADGKRKRSGKGPRARNGHLEANDMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTATERRDLYRSLARGPYLSAWESLYLLRQLNSPEANGLKERCLKKYKARVAANTAA 421
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig787.19140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXZ2_9PHAE2.730e-12175.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig787contigEcto-sp13_S_contig787:6651..8840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1558
Hectar predicted targeting categoryother localisation
Exons3
Cds size1554
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.6636188-CDS-Ecto-sp13_S_contig787:6652..76881681464057.6636188-CDS-Ecto-sp13_S_contig787:6652..7688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig787 6653..7688 -
1681464057.678019-CDS-Ecto-sp13_S_contig787:7712..81731681464057.678019-CDS-Ecto-sp13_S_contig787:7712..8173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig787 7713..8173 -
1681464057.6979406-CDS-Ecto-sp13_S_contig787:8783..88401681464057.6979406-CDS-Ecto-sp13_S_contig787:8783..8840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig787 8784..8840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig787.19140.1prot_Ecto-sp13_S_contig787.19140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig787 6653..8840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig787.19140.1

>prot_Ecto-sp13_S_contig787.19140.1 ID=prot_Ecto-sp13_S_contig787.19140.1|Name=mRNA_Ecto-sp13_S_contig787.19140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=518bp
RPIHTHSRVRRVHSATANESRNPFEDSQTLRAQGGLSSTTRDWRESSSGS
PFSSPIQHFSIMAEGGSVRTGDNGGGGGGSSSSSSSRSKRPLRRQQQQQQ
QQQQPGEVPEATTTRAGSKRRRGEASDGTNGGQRGASNHVAANNDVAPPP
AKQPRGLYRRVSGLVGRAVGLLTRVASAAAEDDDLEAEGGAVARGEESTA
VEPEEGNEGTPAAAAADPPVGAAGVSSTPGRGAAAATSTPFPSSRHGGVG
GGADVNPTKAAFFSPGVGQRREGLRRQTRRGGAGAGTKGNAISKLPSSLR
LSSSARRASGDGLGSTSLRGSTAGDGGGGGGRAEELGLPPVPPFYKLEAA
SPAPAGRVGDDEGEASHEHGGIGVARSLRSGRVIDGVVGVGGGAAPAAAA
VGSSDISGRATDGKIKRSGKGPRARSGHLGADDMQEEEEEEEEGDDDGDD
DEERGGGGAALTATERRDLYRSLARGPYLSAWESLYLLRQLNSPEANALK
ERCLKKYKARVAENTAAA
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mRNA from alignment at Ecto-sp13_S_contig787:6651..8840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig787.19140.1 ID=mRNA_Ecto-sp13_S_contig787.19140.1|Name=mRNA_Ecto-sp13_S_contig787.19140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig787:6651..8840- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCCATTCACACGCACAGCAGAGTGCGGCGCGTCCATTCTGCTACAGC
GAACGAGGTGCGTGGATGATGACTTATGTTGCTGAAAAATTGTGTTCCTG
CTTCATGGAGCTGTGCCTCGATCGCTTTGGCGAGGCGTCTCGCTTGTTTC
CGGGCAGGTGCTAAGGTAGAGATCTGGGGAGAGCGGGGGATCGTCGACAC
ATCGCAACTGCTGTGCAGCACAGCAGAGCGTAGACGGCATCATTGCGTAG
GCCGTATATCGGGCTGATGTTGTATGGGGGAGAGTGTTGACAGGGCTTAG
GGAACGGATGGTGTGCCTGAGTGCGCGTGGAAAGGACAGAGAAGAGCAAG
AGTGGCAATCACGAAACGATGCTGTAGAGCAGATTCGAGGGCAGCGTGTG
CGGTCTTGTGTGCCCCTTTGCGTGCGCTCTGCATCAAAAGGCAAATGGTT
GTTGGTGCTGGCTGTCCAGGGCAACATACGCTAACGTCCCCGAGCTTGTG
TTGCCTCTAAAATATGCTGTGTTGGCTCGCTTCGCCCGTCAAGCAGCAGT
AGTTGGGAACAACACCAGCCTTACTCTCTTTGTTGCCTTGCCGTTGCGTC
TCACATGCTGTTGGGAGGTTTGATGCTGACTGTTTCTCGTCTCTTGCCTT
CTGCTGGCAAAACACAGAGCCGCAACCCCTTCGAAGACTCGCAGACGCTC
CGGGCACAAGGGGGCTTATCTAGCACCACTCGGGACTGGCGAGAATCTTC
GTCAGGCAGCCCCTTTTCAAGTCCCATCCAGCACTTTTCCATCATGGCTG
AGGGAGGCTCTGTTCGCACCGGTGACAACGGCGGAGGCGGGGGCGGCAGC
AGCAGCAGCAGCAGCAGCAGGAGCAAGCGCCCGCTACGCCGGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCCAGGAGAGGTTCCGGAAGCGACGACGA
CCAGGGCCGGGAGCAAGCGGCGGCGCGGCGAAGCATCAGACGGGACGAAC
GGCGGTCAACGCGGCGCTAGTAACCATGTCGCCGCCAACAACGACGTCGC
GCCTCCGCCCGCCAAGCAGCCGCGCGGGCTCTACCGCAGGGTCTCCGGCC
TCGTCGGACGCGCGGTGGGTCTCTTGACGCCGGGCAGACCCCGAGCGCCT
TCCCGCGTCGCTTCCGCCGCGGCGGAAGACGACGATTTGGAAGCCGAGGG
GGGAGCGGTGGCGCGCGGAGAAGAGAGTACGGCCGTGGAGCCCGAGGAGG
GGAATGAAGGGACGCCAGCGGCAGCAGCGGCAGACCCGCCCGTTGGCGCT
GCTGGTGTAAGCTCAACTCCCGGCCGCGGTGCAGCCGCCGCCACTTCTAC
TCCTTTTCCTTCTTCTCGCCACGGCGGAGTCGGCGGCGGCGCTGATGTAA
ACCCCACGAAAGCGGCGTTCTTCAGCCCCGGAGTAGGCCAGAGGCGCGAA
GGGCTCAGACGCCAGACTAGGAGGGGGGGAGCCGGGGCGGGTACCAAGGG
CAATGCCATTTCCAAGCTACCGTCCTCTCTGCGGCTGTCGTCATCGGCTC
GCCGGGCTTCGGGAGACGGGCTCGGATCGACGTCGCTTCGCGGGAGCACG
GCAGGGGACGGCGGCGGCGGCGGCGGCCGGGCAGAAGAGCTTGGCCTGCC
GCCGGTTCCCCCGTTCTACAAGCTAGAGGCAGCGTCCCCGGCCCCGGCCG
GACGAGTAGGCGACGACGAAGGAGAAGCGAGCCACGAGCATGGGGGTATC
GGCGTTGCGAGATCTTTGCGCTCTGGCCGCGTCATCGATGGCGTCGTCGG
CGTCGGGGGCGGCGCCGCTCCCGCCGCCGCCGCCGTGGGGTCGTCTGATA
TTTCAGGCCGCGCTACTGATGGGAAAATAAAGAGGAGCGGGAAGGGGCCG
AGAGCAAGAAGCGGGCACCTCGGAGCGGACGATATGCAGGAGGAAGAGGA
GGAGGAGGAGGAGGGAGACGACGACGGTGATGATGATGAAGAGAGAGGAG
GAGGAGGAGCTGCGCTAACCGCGACCGAGAGGAGGGATCTCTACCGCTCG
CTGGCGCGCGGGCCGTACCTGTCCGCCTGGGAGTCGCTGTACCTGCTGCG
TCAGCTCAACTCGCCGGAGGCCAACGCCCTCAAGGAGCGCTGCCTGAAGA
AGTACAAGGCAAGGGTTGCCGAAAACACCGCCGCCGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig787:6651..8840-

>mRNA_Ecto-sp13_S_contig787.19140.1 ID=mRNA_Ecto-sp13_S_contig787.19140.1|Name=mRNA_Ecto-sp13_S_contig787.19140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig787:6651..8840- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCCATTCACACGCACAGCAGAGTGCGGCGCGTCCATTCTGCTACAGC
GAACGAGAGCCGCAACCCCTTCGAAGACTCGCAGACGCTCCGGGCACAAG
GGGGCTTATCTAGCACCACTCGGGACTGGCGAGAATCTTCGTCAGGCAGC
CCCTTTTCAAGTCCCATCCAGCACTTTTCCATCATGGCTGAGGGAGGCTC
TGTTCGCACCGGTGACAACGGCGGAGGCGGGGGCGGCAGCAGCAGCAGCA
GCAGCAGCAGGAGCAAGCGCCCGCTACGCCGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCCAGGAGAGGTTCCGGAAGCGACGACGACCAGGGCCGG
GAGCAAGCGGCGGCGCGGCGAAGCATCAGACGGGACGAACGGCGGTCAAC
GCGGCGCTAGTAACCATGTCGCCGCCAACAACGACGTCGCGCCTCCGCCC
GCCAAGCAGCCGCGCGGGCTCTACCGCAGGGTCTCCGGCCTCGTCGGACG
CGCGGTGGGTCTCTTGACCCGCGTCGCTTCCGCCGCGGCGGAAGACGACG
ATTTGGAAGCCGAGGGGGGAGCGGTGGCGCGCGGAGAAGAGAGTACGGCC
GTGGAGCCCGAGGAGGGGAATGAAGGGACGCCAGCGGCAGCAGCGGCAGA
CCCGCCCGTTGGCGCTGCTGGTGTAAGCTCAACTCCCGGCCGCGGTGCAG
CCGCCGCCACTTCTACTCCTTTTCCTTCTTCTCGCCACGGCGGAGTCGGC
GGCGGCGCTGATGTAAACCCCACGAAAGCGGCGTTCTTCAGCCCCGGAGT
AGGCCAGAGGCGCGAAGGGCTCAGACGCCAGACTAGGAGGGGGGGAGCCG
GGGCGGGTACCAAGGGCAATGCCATTTCCAAGCTACCGTCCTCTCTGCGG
CTGTCGTCATCGGCTCGCCGGGCTTCGGGAGACGGGCTCGGATCGACGTC
GCTTCGCGGGAGCACGGCAGGGGACGGCGGCGGCGGCGGCGGCCGGGCAG
AAGAGCTTGGCCTGCCGCCGGTTCCCCCGTTCTACAAGCTAGAGGCAGCG
TCCCCGGCCCCGGCCGGACGAGTAGGCGACGACGAAGGAGAAGCGAGCCA
CGAGCATGGGGGTATCGGCGTTGCGAGATCTTTGCGCTCTGGCCGCGTCA
TCGATGGCGTCGTCGGCGTCGGGGGCGGCGCCGCTCCCGCCGCCGCCGCC
GTGGGGTCGTCTGATATTTCAGGCCGCGCTACTGATGGGAAAATAAAGAG
GAGCGGGAAGGGGCCGAGAGCAAGAAGCGGGCACCTCGGAGCGGACGATA
TGCAGGAGGAAGAGGAGGAGGAGGAGGAGGGAGACGACGACGGTGATGAT
GATGAAGAGAGAGGAGGAGGAGGAGCTGCGCTAACCGCGACCGAGAGGAG
GGATCTCTACCGCTCGCTGGCGCGCGGGCCGTACCTGTCCGCCTGGGAGT
CGCTGTACCTGCTGCGTCAGCTCAACTCGCCGGAGGCCAACGCCCTCAAG
GAGCGCTGCCTGAAGAAGTACAAGGCAAGGGTTGCCGAAAACACCGCCGC
CGCT
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