mRNA_Ecto-sp13_S_contig7865.19134.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7865.19134.1
Unique NamemRNA_Ecto-sp13_S_contig7865.19134.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: D8LTV0_ECTSI (Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV0_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 9.630e-79
Identity = 131/153 (85.62%), Postives = 133/153 (86.93%), Query Frame = 1
Query:    1 MVPAERCLSSPRCMSPPALVQQCRIASGRRILCECQCSAAGLEVNESSVELISPTRRGSPAEEREGGGHXXXXXXXXXGEDGVSCVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKELQRQ 459
            MVPAERCLS PR    PA VQ CRIASG RILCECQCSAAGL+VNES+VELISPTRR SPAEERE GGH         GEDGVSCVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLE AERSESVLAVVITGSGGYFTSGADIKELQRQ
Sbjct:    1 MVPAERCLSPPRXXXXPASVQ-CRIASGGRILCECQCSAAGLKVNESTVELISPTRRDSPAEEREAGGHGGGWGRGGGGEDGVSCVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLETAERSESVLAVVITGSGGYFTSGADIKELQRQ 152          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A6H5K239_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K239_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.190e-22
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:  310 SKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKELQRQ 459
            SKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKELQRQ
Sbjct:   18 SKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKELQRQ 67          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A1M3DIP5_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. 67-36 TaxID=1895849 RepID=A0A1M3DIP5_9SPHN)

HSP 1 Score: 67.8 bits (164), Expect = 5.490e-12
Identity = 29/58 (50.00%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  277 GIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKEL 450
            GIAT+TL+RP+ ++A   A++ ++ QL++RA+R + V  ++ITGSGG FT+GADI+E+
Sbjct:   12 GIATITLDRPEKRNALTAAMWAQLGQLVDRADRDDRVGVIIITGSGGCFTAGADIEEM 69          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A6N4VR37_9MYCO (Enoyl-CoA hydratase n=5 Tax=Mycolicibacterium TaxID=1866885 RepID=A0A6N4VR37_9MYCO)

HSP 1 Score: 69.7 bits (169), Expect = 2.350e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  247 VSCVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKE 447
            +S +L ++ +G+ TLTLNRP+ K+A N  L++R+ + L  A+R   + AVV+TG+GG F SGADI E
Sbjct:    1 MSVLLREDRDGVRTLTLNRPERKNAINPELWVRLAEELHAADRDPGLRAVVLTGAGGAFCSGADISE 67          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A351JY31_9CHLR (Enoyl-CoA hydratase/isomerase family protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A351JY31_9CHLR)

HSP 1 Score: 69.3 bits (168), Expect = 2.780e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  253 CVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKE 447
            C++YQ+EEGIAT+ LNRP+  +A N  L+L   + LE A     + A++ITG G  F++GAD+KE
Sbjct:    5 CIIYQKEEGIATVKLNRPRVLNAMNKQLWLEFQEALEDARNDPEIKALIITGEGRAFSTGADLKE 69          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: UPI0019EFAD4F (2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019EFAD4F)

HSP 1 Score: 69.3 bits (168), Expect = 3.180e-11
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  247 VSCVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKEL 450
            VS ++Y+  EG+ T+TLNRP   +AFN  L+  +   L++AER++ V  +VITG+G  F SG DIK++
Sbjct:    4 VSMIVYEINEGVGTITLNRPDVYNAFNEQLHTELASTLKQAERNDEVRCIVITGAGKAFCSGQDIKDI 71          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A523L9E5_9GAMM (Enoyl-CoA hydratase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523L9E5_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 3.750e-11
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  238 EDGVSCVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKEL 450
            E G   +L  EE+G+A +TLNRPK+++A +GA+   + Q L  AER+  +  +V+TG+GG F +G D+K +
Sbjct:    7 ETGTEDILAYEEDGVAVITLNRPKARNAMSGAMTAGLEQALNYAERATQIRCIVLTGAGGAFCAGGDVKGM 77          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A399XSE7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A399XSE7_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 6.050e-11
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  244 GVSCVLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKE 447
            G   VLY E +G+AT+TLNRP  K+AFN A Y  V + L+ A+ S SV AVVI G+ G F++GADI E
Sbjct:    3 GEDAVLYAERDGVATVTLNRPSKKNAFNAAQYDGVRKALDLADES-SVRAVVIKGADGAFSAGADITE 69          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A2E0Y3L7_9GAMM (Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E0Y3L7_9GAMM)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-10
Identity = 30/71 (42.25%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  256 VLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKELQRQREC 468
            +L +EE+GIA +TLNRP++++A +G +   + ++L+ AER+ SV  VV+TG+GG F +G D+K +  Q + 
Sbjct:   15 LLAREEDGIAVITLNRPEARNAMSGDMNAALARVLDYAERTPSVRCVVVTGAGGAFCAGGDVKGMAGQGDA 85          
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Match: A0A497QDS6_THOAR (Crotonase n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A497QDS6_THOAR)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-10
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  256 VLYQEEEGIATLTLNRPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGY-FTSGADIKELQ 453
            VLY+  +GIAT+T+NRPK  +A N A+  R+ +L E+AE+ ESV  VV+TG+G   F +GADI E Q
Sbjct:    6 VLYEVTDGIATITINRPKKYNALNIAVVKRLRELFEQAEKDESVRVVVLTGTGEKAFAAGADITEFQ 72          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7865.19134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTV0_ECTSI9.630e-7985.62Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5K239_9PHAE3.190e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1M3DIP5_9SPHN5.490e-1250.00Uncharacterized protein n=1 Tax=Sphingomonas sp. 6... [more]
A0A6N4VR37_9MYCO2.350e-1147.76Enoyl-CoA hydratase n=5 Tax=Mycolicibacterium TaxI... [more]
A0A351JY31_9CHLR2.780e-1147.69Enoyl-CoA hydratase/isomerase family protein (Frag... [more]
UPI0019EFAD4F3.180e-1145.592-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomeras... [more]
A0A523L9E5_9GAMM3.750e-1142.25Enoyl-CoA hydratase n=3 Tax=Gammaproteobacteria ba... [more]
A0A399XSE7_9BACT6.050e-1154.41Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2E0Y3L7_9GAMM1.040e-1042.25Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria ba... [more]
A0A497QDS6_THOAR1.190e-1052.24Crotonase n=1 Tax=Thorarchaeota archaeon (strain O... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7865contigEcto-sp13_S_contig7865:124..6903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score246.5
Seed ortholog evalue8.2e-63
Seed eggNOG ortholog2880.D8LTV0
Preferred nameECI1
Model size471
KEGG rclassRC01078
KEGG koko:K13239
KEGG ReactionR04756
KEGG Pathwayko00071,ko04146,map00071,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004165,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016853,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0031907,GO:0031974,GO:0032787,GO:0034440,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:1901575
Exons2
EggNOG free text desc.enoyl-CoA delta isomerase 2
EggNOG OGsCOG1024@1,KOG0016@2759
Ec32 ortholog descriptionEnoyl-CoA hydratase
Ec32 orthologEc-28_002660.1
EC5.3.3.8
Cds size471
COG Functional cat.I
BiGG ReactioniMM904.YOR180C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.3336546-CDS-Ecto-sp13_S_contig7865:123..4321681464057.3336546-CDS-Ecto-sp13_S_contig7865:123..432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7865 124..432 +
1681464057.3476803-CDS-Ecto-sp13_S_contig7865:6741..69031681464057.3476803-CDS-Ecto-sp13_S_contig7865:6741..6903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7865 6742..6903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7865.19134.1prot_Ecto-sp13_S_contig7865.19134.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7865 124..6903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7865.19134.1

>prot_Ecto-sp13_S_contig7865.19134.1 ID=prot_Ecto-sp13_S_contig7865.19134.1|Name=mRNA_Ecto-sp13_S_contig7865.19134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
MVPAERCLSSPRCMSPPALVQQCRIASGRRILCECQCSAAGLEVNESSVE
LISPTRRGSPAEEREGGGHGGGWGRGGGGEDGVSCVLYQEEEGIATLTLN
RPKSKHAFNGALYLRVVQLLERAERSESVLAVVITGSGGYFTSGADIKEL
QRQREC*
back to top

mRNA from alignment at Ecto-sp13_S_contig7865:124..6903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7865.19134.1 ID=mRNA_Ecto-sp13_S_contig7865.19134.1|Name=mRNA_Ecto-sp13_S_contig7865.19134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7865:124..6903+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACCAGCCGAGCGGTGTTTGTCTTCACCGCGATGCATGTCACCGCC CGCCTTGGTACAGCAGTGTAGAATCGCCAGCGGCCGTCGTATTCTTTGCG AGTGCCAGTGTTCTGCAGCAGGACTGGAGGTCAACGAGAGTAGTGTCGAG CTCATCTCGCCAACACGCAGGGGCTCGCCAGCAGAGGAACGAGAAGGAGG GGGTCACGGAGGAGGATGGGGCAGAGGCGGCGGGGGAGAGGATGGTGTTT CGTGTGTGCTGTACCAGGAAGAGGAGGGCATCGCCACCTTGACTCTGAAC AGGCCGAAGGTGTGAATACACATGTTGCCGTGCTGTGGATCCGAGCGCTG TCCTTTGAAGCCAATCAAAGTTTGAGAGTCTTCCGCTCCTTGCCCTCTGG TGCTAGATACCACATGCCGCATGCTCCCGTCTCCGGTGCGTACTACCGGA ATACAGACGTCGGCCCGGTTTAGCGGTCCATAGTGTCACGACATTTCATG ACCTCTTTTCAGGGCACCGCCGCGAAATCTCTTTGGCGGTCATTAACCGC TAAACTAGGAGGCTCAACAGCGGTTACGAACCGCTAAACCGGGAAAAAGC CCATTTTTGGCCTACGAGAGCAGCGCCGAAAGCTCGTCTTGATACAGTTG GCGCCCGCAGTTAAGAAACGCTTATTTCAGGTTCAGCCTCCATTTCTTAC TGTGGGCTACAAACTCAGCGCATGTCGTTCAGTTTCTTATATCAAGTTTC TTATTTTTACGTACAGCCAAGTCCTGGTGATTTTTTTAAAACGGCAATTT CTTATTTCTCTTCTTGCATAGTACACGTTCCAAATACACAAACGATTTGC GCTGCTTTCCTCGACTCCCTACTCAACCCCGATTCTCACTAGCGACGGCT GCACGTAAGGCCACTCCCTAGAATAATGTATCCAGCGGCAACGTCTCCCT ATCGTTACAAGGTCCTGTACCCCCCTCATGAGCGAGGGCTGAAACTAAAC AAATGGCTCGTCGACAGCTCTTGTTGATCTCTGAGGGCGACCAGCTTGGT CAAGCCCTCACGAGAGCTGGCGGAGAGCACCATCAAAGCTGTGTACAGCA GACAGCATGTCGTGGTTCACGGCCTGTTTGGTATGATATGCCAAAAATTT ATCGCCAGCAGAGAGCGTGGCAGAGCCCGCAGGGGGCCGGAGGGGGCGCC GCAAAAAAAACACTCACCCCTCGTCGTACAACTAATAATAATGCACCATG GGAGGGAGGGGTGTTGGGAGAGGGGAAAGAGCGAGAGAGCTGTGGGTCTA TTTCTTGTTCGACACGCTCCCCCGTAAACCCTCGTTTCTTATGTAGTAGG GCAGCGGTCGCCGCTGTGTTTCTTATTGAGACATTTCTTATTGTGTGACT CAGGTTGAGCTGTCTTTCTTAACCCTATTTTCTTATTTTTCGTGGAAAAG TGAGCCTCAATATCTTAACAAAATATTTCATAGCTATGGGCGCCAACTGT AAGGTCATGTCTCTCACTGCAGCAGCCATACCAAGGTGCAGATGAAGAAG TAACGAGCCAAAGAAGGACAACGCGCAAGTACATTAATTGATAGTTCGTT TTGATCCAAACCACGAAGCTTATTTTCCCTTCGGAACTGTATGCTTCTCA TCAAGACTGGAACAACATCGCTCGCGTATCTGACGAAGTAAAGGTGATGA GACAAACTTGTGACAACGGAATGGCAACCAATCACGTGCTTGAGCGTCTC ATTTCTACCATGTGTCGTGATCAATCTATCTTAACCCAGCATAATCTCTC TGATATTTTCCTCGCGCGCTGGTTAAGTGGCGCGCGCTGTGGGGAACGCC ATTGTTACCCTGCGAAAATAGTGTGCTGCTTCGCCTACGCCACACGACTC CGCGCACTGCTCGCTGGCCAAAATCTGATGATAGCTCCGAGTATGTATGG TGGTGGCGCCATCCCCCCCCTGCCCTTCGCATCGTCAACTTGTGTCGTGG TATCTAGCCGTACAGTTCTAGGTCGTCGTCAGAGATGTTAGGGTCCCATC CATGTACATGCCGGAAAAATTTTCAACAACCTCGTCGTTCGCATCCTTAC TCAAAGCTTCGGCGATCTCTTCCTGCACTTTATCTGAGTGCACTACCTTC TGGTTAAGAAGCTTCAAAACCTCGAGCTTCTAGCCAAAGTAGAGCCGCGT GTGAGGCTGTTGTGTAGCTGCAGCGCGAGTTGCTTCTTTCCGCCCGCCTG GTGCTTGAAAGCCACCTTCCACCTCTTGGCGCTCGGGAGGATTTGAGACG CGAGAGGAATCCAACGCGTTCTTGGTTGCACGCCGGTTGCATCTCGTAGT CATCCGGATCCTCCACCTCCCCACACATGCCGTGTATGCGGCCGCCACAA CCACCTTAACAATCGTGCGCGCGGCTTGGACTCAGTGCCGCATCTAAAAG CTTGCACAGTTCTCCATCCACGCGCCGCATGGTGTGTCTTTATTAATATC ATCGACCTCGCTAAGCGGCTGACCAATGAAAAGACGTCGTCGTCAGTCTC AGTGCGGTTTACATAAAATACTGGTATACGCCATTAGCTGGGACCCCGCG AGGGGGCGGCATGGGGCAGGCAAAATCTATTCTCCAGATTTAGGACAGAA ACAGTAGCAACAGAGGAAACTGCTACCTTGCACTTGAGTTCGTTTTGGAG TGCTTTCACATCATCCTCCTTGCTTTCACCACCATCACGCTCTCATCGTC GTTTGTACAGCTATTTTTCGGCGATTGTTCTCTAGCCCTGCGTCGTTTGG TGTGTGTGTGCGTCTCGCTGTTTCCTTTTTTTTATGAGTATCGACCAGGT AACAGGCTGACCAATGTGGCTGTACAGGGAGTATGTGCAAGCGAAGCGCG CACTACAGTAGGTATCCGCACAAATTGAACCGATAACCGCTATCGGTGGT TGAAAACATGCTCAATAACCGCGATTGAGGGCACGACCGGTGTAACGGTT GTATATCCGCTACATCGGGGTGCAGCCGTGTCACAAGATTTTATTGCTGC TTTGCAGGTTATCCCGCTAAAGAGGGAACCGCTAAACCGGGCCCACGACT GTGTGCAAGTAATTTTGTAATTTTGCCGCAAGAGTACCGTCTGGCCACCG AGGTTTTGGTCAAATGCGGCCACCGAGGTTCTGACAAGTGGGGTCTGCGC ACCGGGCTGTTTTGCCAGGTGGTGCAGAATCGTGGGTGAGTTTTTTCTTC TCGGCAGTGGCAAAATCCATGACGGCAATGTCATGTTTTTCTGGATCATC ACGTTGTGCGTGTTGAAACAAGCGGAGATATATTTGTAAGGCTGTTTGCT AAACACCTGATTTCCTTTCCCAAAAATTCTCACTTTTCAGGATGGACAAA AATCCGGCTGGAAAAAGTCCTGCCGTTCTTACAATGAACCGGATTTATCT GGCGGATTCTTGGGGGTGGGTGTAGATCACACCCATACGACATAGTCGGC GAGTTCGATTTGAGTTTTTAACGTATCACTCCCATCAACGGCCCCGAGCA ACCCTACACTGAGGGGATTGCTATTCTGCACGCTGGCTGTTGATGGTCGC TCGGCACGCTTGCGTAAGAAAAACATATCGCATCACACCACGCATGGAGA CGCCGAAACAGGCCGAACCGCACGAGGCAGCAAGGAGAGCCACTTTTTGT CAGAGAGGGGAGGACACCGCAACTGATTTCTCGCTCCCGAGGCCACCGAT CGAAGCCAGACCGGTCAGAGCGTGCTCTCTGTTCCTTGCCCTCTGCCGGA GTATACTTGCTCGGCAGCGCGTACTCTCGATCGACGGAGAGAAGCATGCG CGTGGTGCCCGTTGGTTTTTCGAACTGTAATTTTTTCTTGTCTGCTTCAC TTGAGAATAGACTAATGTGTTGAGCACGCCTTGACCGGTCTGGCTTCGAT CGGTGGCCTAGGGAGCGAGAAATCAGTTGCGGTGTCTTCCCCTCTTTGAC AAAATCGGCTATTTTTGCCATCTCGTGGCGGTTTGGCCTGTTTCGGCGTC TCCATGCTTTTGGTGTGATGCGATATGTTTTGACGCACGCGTGCCGAGCG ACCATCAACAGCCAGCGTGTAGAATAGCAAACCCTTCAGCGTAGGGGTGC GGAGCCCTTGATCGAAGCGATACGTCAAGAAATGAGGTCGCACTGGGCGA TCGTGTCGCCTGGGTTCACCAGCGGTGAACTTTTTGGGATAAGAAATCCA ACTGGGCACCATCCTTATTTCTGCCAAATTTTTCGGGGGAAGGCAACCCA AAAGCTGAACCCGGATTTTGTCGACCGAAAAAAGTGAAGAATCCGGCTGC GTAAGAAGCCGGGTTTCTGCCCATCCTGAAAAGTGGAGCTTTTTGGGAAA GGAATCCAGGTGTAAAAGAATCAGCCTACGGCTGAGTCTTACGGACTGGT TTTTCGGTGTTTTCTTTGGGGGGGGTCCTTTTCTTAGCCCAAAAAACTAT CTGTGGGCATCTTACGCGGAGGAAAATGGCAAATCCCTGGAGCCCAAGTT CCTGCTGGCCGAATATTTCTTAGGATTCCAGCGGGCGAGTTTGAAAATAG GCCCATTCGGCTGATGTTTTACAGGTTGGAAATGGGGGTGATCACACCCC GATCGTGCCAGAACGATGAGCTACACCGTCTGCTGGCCAAACAGAGGGCA GTGTCATGAGGTCATGCACCAACCCTCTGCAGGTATCTAAAATTCAGCAG TGTCATGAGGTCATGCATCAACCCTCTGCAGGTATCTAAAATTCAGGGCG TTCTGCGTCGTGTTGGCCGCACGCGAGCCGAAAACGTCGACCCTGCCACA TTTCTCTGCTGACGTTCTTGCCTATCGACCGAAAAGAGCCGTTTTTGTGC CTGCTGCATGTGTGACCAGTCAAGGACGCACACCAGAGAGAGCCTTTAGG CCGTCGACATCCACAAACTGCAGCCAATAGCGTGTGGTCATACACATACC CTCTGCTCGCGTCCCAGAAACAGAGCGTGTCGTCCAGTTTTGATTGCACA CGGCCTGCAAACGTGAACCAAAGTGTGGTTCGGTGTTGACTTTTTTGAAC GTTGCCTTTTTTGTTCTGATTGCTCCGAGTGTGATCAGTCCACAATGCAC GCTAGAGAGAGGCCTTTGGCCGATGACATCCACAGATTGCAGCCAATGGC GTGCGATCGTACACGTGCCCTCTGCAGGCGACCCCAAAACAGGGCGCTCG GTGTCTTATCGGTCGCACACGAGCCAAAACCCGTGAAATGAAGCATGTTG TGACCCATAAAAACTTGAATCGCTTTTTTTCCCCTTTAAAAAGTATGTGT TTCGAGGAGCAGTAATAATGTCGCTTGGATCTGGATAACTTTTCCCGTGC AAACCACCTCCGCTGAGAGAGAGCAAGAAAAAAAATGCGAGAAGTCAGCG CTTTAGAGTTGGCCTAAGAGTTCTTTCCGTCTTTTATTTCTTTCTTCGAA GTGTATTTTCTACATATGACGTACGAATCCATGTCTATCCTTTGAAAAGA GTCTACGATAGATTTGCAATGAATTCATAGCGCCAGCGGAAACTGCCTGC ATTTCTACGGTTTTCCGAGCAGCACACAGCGATATCTCCACTGCGGGCAA GCTCTTTTGCTGGCAGTCCGGTAGCCGTCCTGCTTGTCTCTCTGTATGTT ATGCTGGGAATGTGTAGAGGAATATGCTGGGAGTGGTTGGCGGCGGGTTT TCGGTATGTTGCACCCTTGAAAAATGTACAGCAGTTAGATGTTTGGCACG TACGTATGCATTCGCACACGGTGAGACGTTTCCTTGTATATGTCGAGGCG GACCGACAACACCTTACGATTGACTCTACTGCTCGTCAGTGTTCATCAGC TCGCTTGGCTACGCTTTCGCACCGCCTGAGTTTCTGCTCCCAGAAGCGAA GCGTCCCTGTGTGTTTACTGACGGGTCACAGCTGATCCGCGTTTGTGACT GCTGTGTAGTCTACAGATTGTAAATTTTCTTTTCCGTTCGAGGTTCGGTG GGCGGTTCGAGTCACAAAGACGTCAGCTGTGTTAATTGTTGAGCTTGGGA AACATCACACCGAAGCTGTCAGTCAGCTATGGGTTGGTCCTGCTGCCTGC TTTTATTGCCATCCTCATCACCCTTTGATGACACTGTGCTCCTTTGTGCC CACTACGGAGGGATCACTTGTATGGCCTTGTATCTTTGTCACATCAGGTG GCACTATCTGTGTCGGTGCTGGAGCTGAGAGAGACCATCGTTGCCTATGT GCAATGCTTCACTCGTCCTTTTTTGCATATTTTGCCTAGTTGCTGCTGAA AGACGGCTTTTCTGTGGATGCCGACATGTTGAATTGGAGTTATCCAAGCC GTGCCGGCAGTGAAATTGTCGATCCGCTCTCTGCAAGCCTGTGCGTGTGT TCGCCCAACGGCTGTGACTATCATTACGTGCCACGCCTTCTTCTCCCATC GCTTTTAACGCTCGAAGTTTCATCCCACCCCTGTCCCTTGAACTCGCTGG TCTTTTGTTCTTCCCCATGTCGTTTGGTGCCTGCCCCCCGCAACGTGTGC GTCCGTGCGTGCTTTTAGTCGAAACACGCGTTCAATGGAGCACTTTACTT GCGCGTGGTGCAACTCCTTGAAAGGGCTGAGCGCAGCGAGTCCGTCTTGG CGGTAGTAATAACCGGGTCAGGGGGGTACTTCACAAGCGGTGCCGATATT AAGGAGCTCCAACGACAGCGTGAGTGCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7865:124..6903+

>mRNA_Ecto-sp13_S_contig7865.19134.1 ID=mRNA_Ecto-sp13_S_contig7865.19134.1|Name=mRNA_Ecto-sp13_S_contig7865.19134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7865:124..6903+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACCAGCCGAGCGGTGTTTGTCTTCACCGCGATGCATGTCACCGCC
CGCCTTGGTACAGCAGTGTAGAATCGCCAGCGGCCGTCGTATTCTTTGCG
AGTGCCAGTGTTCTGCAGCAGGACTGGAGGTCAACGAGAGTAGTGTCGAG
CTCATCTCGCCAACACGCAGGGGCTCGCCAGCAGAGGAACGAGAAGGAGG
GGGTCACGGAGGAGGATGGGGCAGAGGCGGCGGGGGAGAGGATGGTGTTT
CGTGTGTGCTGTACCAGGAAGAGGAGGGCATCGCCACCTTGACTCTGAAC
AGGCCGAAGTCGAAACACGCGTTCAATGGAGCACTTTACTTGCGCGTGGT
GCAACTCCTTGAAAGGGCTGAGCGCAGCGAGTCCGTCTTGGCGGTAGTAA
TAACCGGGTCAGGGGGGTACTTCACAAGCGGTGCCGATATTAAGGAGCTC
CAACGACAGCGTGAGTGCTGA
back to top