mRNA_Ecto-sp13_S_contig7856.19125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7856.19125.1
Unique NamemRNA_Ecto-sp13_S_contig7856.19125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7856.19125.1 vs. uniprot
Match: D7FXF6_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF6_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 4.170e-57
Identity = 121/213 (56.81%), Postives = 124/213 (58.22%), Query Frame = 1 
Query:  187 VDEEFQMALLRVVSRGGSPSPPPRHPGRTRWSFLKDVPRDLLPEGLTAA----------------------------------------------------------------------------GHAEPTPPATALSEAGDTQPEVT--AAAAAAAIYPKTPRVQADGDWDDDFCSGTDSDDPSAILSPTTEARMRCPVEVKTSRTGRSATA 591
            VDEEFQMALLRVVSRGGSPSPPPRHPGRTRWSFLKDVPRDLLP GL AA                                                                            G AEPTPPATALS  GDTQP+V   AAAAAAAIYPKTPRV+ADGD DDDF SGTDSDDPS +LSPTT ARMRCPVEVK SRTGRSATA
Sbjct:   34 VDEEFQMALLRVVSRGGSPSPPPRHPGRTRWSFLKDVPRDLLPGGLKAASERGHRGLPKAADASTRPSGXXXXXXXXXXXXXXXXXXXXXXXRDDASRRDRVSVESGRRAQQGGDHVKGIGADAAGRAEPTPPATALSGVGDTQPDVATAAAAAAAAIYPKTPRVKADGDRDDDFYSGTDSDDPSTVLSPTTAARMRCPVEVKASRTGRSATA 246
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BLAST of mRNA_Ecto-sp13_S_contig7856.19125.1 vs. uniprot
Match: A0A6H5L4J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 7.130e-37
Identity = 85/136 (62.50%), Postives = 90/136 (66.18%), Query Frame = 1 
Query:  205 MALLRVVSRGGSPSPPPRHPGRTRWSFLKDVPRDLLPEGLTAAGHAEPTPPATALSEAGDTQPEVTAAA------AAAAIYPKTPRVQADGDWDDDFCSGTDSDDPSAILSPTTEARMRCPVEVKTSRTGRSATAN 594
            MALLRVV +GG                      D+   G  AAG AEPTPPATA SE GDT+P+V AAA      AAAA YPK  RV+ADGD DDDF SGTDSDDPSAILSPTT ARMRCPVEVK SR GRSATAN
Sbjct:    1 MALLRVVQQGGD---------------------DVTGIGADAAGGAEPTPPATAFSEVGDTKPDVAAAAVVGVVPAAAATYPKPLRVKADGDGDDDFYSGTDSDDPSAILSPTTAARMRCPVEVKASRAGRSATAN 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7856.19125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXF6_ECTSI4.170e-5756.81SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4J8_9PHAE7.130e-3762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7856contigEcto-sp13_S_contig7856:2987..4707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size599
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionSET domain
Ec32 orthologEc-07_003020.2
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.6533968-CDS-Ecto-sp13_S_contig7856:2987..32521681464056.6533968-CDS-Ecto-sp13_S_contig7856:2987..3252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7856 2988..3252 -
1681464056.6664348-CDS-Ecto-sp13_S_contig7856:3507..36521681464056.6664348-CDS-Ecto-sp13_S_contig7856:3507..3652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7856 3508..3652 -
1681464056.6808572-CDS-Ecto-sp13_S_contig7856:4520..47071681464056.6808572-CDS-Ecto-sp13_S_contig7856:4520..4707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7856 4521..4707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7856.19125.1prot_Ecto-sp13_S_contig7856.19125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7856 2988..4707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7856.19125.1

>prot_Ecto-sp13_S_contig7856.19125.1 ID=prot_Ecto-sp13_S_contig7856.19125.1|Name=mRNA_Ecto-sp13_S_contig7856.19125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
AKEGGESAAVAAAEGESEFYVAFLPKGWRAGTAAGGRTAGGFRPMAPAAD
VDLQKHDVEVLHVDEEFQMALLRVVSRGGSPSPPPRHPGRTRWSFLKDVP
RDLLPEGLTAAGHAEPTPPATALSEAGDTQPEVTAAAAAAAIYPKTPRVQ
ADGDWDDDFCSGTDSDDPSAILSPTTEARMRCPVEVKTSRTGRSATANP
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mRNA from alignment at Ecto-sp13_S_contig7856:2987..4707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7856.19125.1 ID=mRNA_Ecto-sp13_S_contig7856.19125.1|Name=mRNA_Ecto-sp13_S_contig7856.19125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7856:2987..4707- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAAAGAAGGCGGGGAATCGGCGGCTGTCGCTGCCGCCGAGGGGGAGTC
GGAGTTCTACGTGGCGTTCTTGCCGAAGGGGTGGCGGGCGGGGACGGCGG
CGGGCGGGAGAACAGCGGGCGGTTTCAGACCCATGGCCCCCGCCGCGGAT
GTCGATCTGCAAAAGCACGACGTTGAGGTTTTGCATGGTGAGCCACAACG
TTGGGATCACTTGTTTTGATTGATGATCCACTTTCGATGTGTTTGTGTAT
TGTGTGTGGGTGGCCCACGGCGCAGGGGGACTACGGTCCGAGCACAAGGC
GCAACAGTGTACGTGCAGTGATTGTTGTGGGAATAGTGCCCGAATCAGCT
GCACTCGCTTGTCCACGCATAGGTGAGTTGGCGCATCTGTATCGCGCGTC
GTGGGTAGAGCCTGCGACGCTTTTAAAAAATACTGCCGACGTGGGCCAGT
AAGATGGCAGCAAATCTACTGATTCATGTATAACTCATCGCCGATATCAT
GTATATGTAAAGGAGTACACAGCTATTACCCGGGGCTTCTCTCCGTCAAT
TGACGTTATCAAGCTAGGTTTGGGTGCCAGGTGGTACCCTGGGGATGTCA
CGGGCGGAGGCTCCGTATGTTTAATTGCCATGATCGGTGAGTTTTTCCTC
TTTCTCTCTCTATAAGCTAGAGAAGCTCGGCTCAACCAGTTCGCCGGGTG
GCTATTGAGAATCGTTCACCTTCAAAAGGTCCTGGGGTTTTGTTGCGATG
ATTCTCGACACCACGGCGGAAACTCGAAAATTGCTTTGACACAATGTCCT
TGCTTTCGGAGGTCCCTTCTGGCTATCCTCTTGGGGTCGCTTGTGCTTTC
CCGTTGATGCGCCCACGTTGGCCAATGCTCCAGCTTGTTTGCTCTCTCTC
TGTGTCTGTGTGTCTGTCTCTCTCTCTCTTTGTCTGTCTCTCTCCCCCTC
CCTCTCTCAATCTCTCTCAATCTCTCTCTTTCTTTCTCTCTCTTTATTTC
CCTCTCTCTGTCTGTCTGTCTGTCTCCCCCGCTCTCCCCCTCTCCCGACC
TGCAGTCGACGAAGAATTCCAAATGGCGCTGCTGCGTGTGGTGAGTCGGG
GAGGGTCACCGTCGCCTCCCCCACGGCACCCGGGCCGCACCCGGTGGTCG
TTCTTGAAAGACGTTCCCCGCGACCTGCTCCCCGAAGGTCTGACGGCGGC
ATCCGAGCAGCGGCAGAGAGGGCTCCGAAAGGCGGCCGACGCGAGCACAC
GGCAAAGCGGAGGAGGGGAGGGAGGGGGCCAAGACAAATGGCGGGTCCCC
TACCAACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGTCGCGAGACGACGCTTTGCGGAGGGATCGAGTTGGCGCGGAAAGCG
GACGACGGGTACAGCAAGAAGGAGACGATGGTACGGGGATCGAAGCAGAC
GCTGCCGGTCACGCCGAGCCGACTCCACCCGCCACCGCCCTGTCAGAGGC
CGGCGATACCCAACCCGAAGTTACCGCGGCGGCGGCGGCAGCGGCGATAT
ATCCGAAGACTCCCCGGGTTCAAGCTGACGGCGATTGGGACGACGACTTC
TGCAGCGGTACGGATAGCGACGATCCCTCGGCAATCCTCTCCCCGACGAC
GGAGGCGCGCATGCGATGCCCGGTCGAGGTAAAGACCAGCCGCACGGGGC
GTTCCGCCACGGCAAACCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7856:2987..4707-

>mRNA_Ecto-sp13_S_contig7856.19125.1 ID=mRNA_Ecto-sp13_S_contig7856.19125.1|Name=mRNA_Ecto-sp13_S_contig7856.19125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7856:2987..4707- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAAAGAAGGCGGGGAATCGGCGGCTGTCGCTGCCGCCGAGGGGGAGTC
GGAGTTCTACGTGGCGTTCTTGCCGAAGGGGTGGCGGGCGGGGACGGCGG
CGGGCGGGAGAACAGCGGGCGGTTTCAGACCCATGGCCCCCGCCGCGGAT
GTCGATCTGCAAAAGCACGACGTTGAGGTTTTGCATGTCGACGAAGAATT
CCAAATGGCGCTGCTGCGTGTGGTGAGTCGGGGAGGGTCACCGTCGCCTC
CCCCACGGCACCCGGGCCGCACCCGGTGGTCGTTCTTGAAAGACGTTCCC
CGCGACCTGCTCCCCGAAGGTCTGACGGCGGCCGGTCACGCCGAGCCGAC
TCCACCCGCCACCGCCCTGTCAGAGGCCGGCGATACCCAACCCGAAGTTA
CCGCGGCGGCGGCGGCAGCGGCGATATATCCGAAGACTCCCCGGGTTCAA
GCTGACGGCGATTGGGACGACGACTTCTGCAGCGGTACGGATAGCGACGA
TCCCTCGGCAATCCTCTCCCCGACGACGGAGGCGCGCATGCGATGCCCGG
TCGAGGTAAAGACCAGCCGCACGGGGCGTTCCGCCACGGCAAACCCT
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