mRNA_Ecto-sp13_S_contig7823.19077.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7823.19077.1
Unique NamemRNA_Ecto-sp13_S_contig7823.19077.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7823.19077.1 vs. uniprot
Match: A0A6H5KDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC2_9PHAE)

HSP 1 Score: 701 bits (1809), Expect = 8.910e-249
Identity = 379/442 (85.75%), Postives = 393/442 (88.91%), Query Frame = 1 
Query:   43 EIDGEGLLGESDAGRESEATTSNNQMRATKERFDSYRELVEEETTRVPGNDEAEDNPSAAPVSEKEENMPAGTRSGYRSGKGEQTTVGAEQGHPSSSDTEDMKILPQGVDQNKEEDQKEMEGGCREGQRNGDGIAPGTAPLELSGGSDNRVLQDTGKPDRRAKPAAVELSTANPEPSATSRGFMAKGSAGRDSKESNAALCVTWRGKPMTLTEPVLISLKESTIAQTRVELVEEGEMKNQRRESMSTGSKRDVTDHPWSSDEDSEPARGPASQGRSGDRRREATVDAGSKPGPCTRAGAVDPSAQHNGRHLEEKQAGSSRLDAMDNEEEHRAESKDSQRSGAPRTDHEGKALPMVQRGVPTSSRRPTREAVFLSEPYFGPPTVACPRAWPAESTNTMASATDGRHGHHARRSHLADYSSSASDDLQDKQWAGEPAMESKGNR 1368
            EIDGEGLLGESDAGRE E TT+NNQMR   ER DS REL +EETTRVPGNDE E NPSA PVSEKE+NMP GTRSG RSGKG+QTTV AEQGHPSSSDT+ MKILPQGVDQNKEEDQKE+ GGC EGQRNGDGIAPGTAPLELSGGSDNR LQDTGKPDR  KPA VELSTA P PSA SRGFM KGSAGRDSK SNAALCVTWRGKPMTLTEPVLISLKESTI Q RVEL E+GEMKNQRRESMSTGSKRDVTD+PWSS EDSEPARGPASQGRSGDRRREATVD GSK GPC R G  DPSAQHNGR+LEEK  GSSRLDA++NEEEHRAESKDSQRSGAPRT +EGKALPMVQRG PTSSRRPTR+AVF SEPYFGPP  ACPRAWPAEST TMA ATDGR GHHARRSH A YSSSASDDLQDKQW+GEPAMES GNR
Sbjct:  192 EIDGEGLLGESDAGREVEGTTNNNQMRTISERLDSKRELAQEETTRVPGNDEKESNPSAEPVSEKEDNMPVGTRSGSRSGKGKQTTVWAEQGHPSSSDTKGMKILPQGVDQNKEEDQKEIVGGCGEGQRNGDGIAPGTAPLELSGGSDNRFLQDTGKPDRPGKPAIVELSTATPAPSANSRGFMVKGSAGRDSKGSNAALCVTWRGKPMTLTEPVLISLKESTIPQARVELEEKGEMKNQRRESMSTGSKRDVTDNPWSSYEDSEPARGPASQGRSGDRRREATVDTGSKLGPCAREGKADPSAQHNGRYLEEKHDGSSRLDAVENEEEHRAESKDSQRSGAPRTHYEGKALPMVQRGTPTSSRRPTRQAVFSSEPYFGPPIAACPRAWPAESTKTMACATDGRPGHHARRSHRAGYSSSASDDLQDKQWSGEPAMESNGNR 633
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7823.19077.1 vs. uniprot
Match: D8LSZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSZ9_ECTSI)

HSP 1 Score: 662 bits (1709), Expect = 5.850e-237
Identity = 359/417 (86.09%), Postives = 372/417 (89.21%), Query Frame = 1 
Query:  118 MRATKERFDSYRELVEEETTRVPGNDEAEDNPSAAPVSEKEENMPAGTRSGYRSGKGEQTTVGAEQGHPSSSDTEDMKILPQGVDQNKEEDQKEMEGGCREGQRNGDGIAPGTAPLELSGGSDNRVLQDTGKPDRRAKPAAVELSTANPEPSATSRGFMAKGSAGRDSKESNAALCVTWRGKPMTLTEPVLISLKESTIAQTRVELVEEGEMKNQRRESMSTGSKRDVTDHPWSSDEDSEPARGPASQGRSGDRRREATVDAGSKPGPCTRAGAVDPSAQHNGRHLEEKQAGSSRLDAMDNEEEHRAESKDSQRSGAPRTDHEGKALPMVQRGVPTSSRRPTREAVFLSEPYFGPPTVACPRAWPAESTNTMASATDGRHGHHARRSHLADYSSSASDDLQDKQWAGEPAMESKGNR 1368
            MR T ERFDS REL EEETTRV G+DE E NPSAAPVSEKEE MPAGTRSG RSGK EQT VGAEQGHPSSSDTEDMKILPQGVDQNKEEDQKEMEGGC EGQRNGDGIAPGT  LELSGGSDNRVLQDTGKPDR AKPAAVELSTA PEPSA SRGFM KGSAGRDSK S+AALCVTWRGKPM LTEPVLISLKESTIAQT VEL E+GEMK+QRRESMSTGSKR+ TD+PWSSDEDSEPARGPASQGRSGDRRR AT D GSK GPCTR G  D SAQ NGR+LE K AGS RLD M+NEEEHRAESKDSQR+GAPRT H+ KALPMVQRG PTSSRRPTR+AVFLSEPYFGPP  ACPRAWP ES+NTMASATDGRHGHHARRSH A YSSSASDDLQDK WAGEPAME+KGNR
Sbjct:    1 MRTTSERFDSNRELTEEETTRVSGSDETEKNPSAAPVSEKEEGMPAGTRSGSRSGKREQTAVGAEQGHPSSSDTEDMKILPQGVDQNKEEDQKEMEGGCGEGQRNGDGIAPGTTSLELSGGSDNRVLQDTGKPDRPAKPAAVELSTATPEPSANSRGFMVKGSAGRDSKGSSAALCVTWRGKPMALTEPVLISLKESTIAQTSVELEEKGEMKSQRRESMSTGSKREATDNPWSSDEDSEPARGPASQGRSGDRRRAATEDTGSKLGPCTREGTDDSSAQCNGRYLEGKHAGSRRLDTMENEEEHRAESKDSQRNGAPRTHHDCKALPMVQRGTPTSSRRPTRQAVFLSEPYFGPPIAACPRAWPTESSNTMASATDGRHGHHARRSHRACYSSSASDDLQDKLWAGEPAMEAKGNR 417
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7823.19077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDC2_9PHAE8.910e-24985.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSZ9_ECTSI5.850e-23786.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7823contigEcto-sp13_S_contig7823:986..3014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1371
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_002030.1
Cds size1371
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464053.1206946-CDS-Ecto-sp13_S_contig7823:985..10271681464053.1206946-CDS-Ecto-sp13_S_contig7823:985..1027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7823 986..1027 +
1681464053.1310098-CDS-Ecto-sp13_S_contig7823:1685..30141681464053.1310098-CDS-Ecto-sp13_S_contig7823:1685..3014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7823 1686..3014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7823.19077.1prot_Ecto-sp13_S_contig7823.19077.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7823 986..3014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7823.19077.1

>prot_Ecto-sp13_S_contig7823.19077.1 ID=prot_Ecto-sp13_S_contig7823.19077.1|Name=mRNA_Ecto-sp13_S_contig7823.19077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=457bp
KEEKDSLAPLARAREIDGEGLLGESDAGRESEATTSNNQMRATKERFDSY
RELVEEETTRVPGNDEAEDNPSAAPVSEKEENMPAGTRSGYRSGKGEQTT
VGAEQGHPSSSDTEDMKILPQGVDQNKEEDQKEMEGGCREGQRNGDGIAP
GTAPLELSGGSDNRVLQDTGKPDRRAKPAAVELSTANPEPSATSRGFMAK
GSAGRDSKESNAALCVTWRGKPMTLTEPVLISLKESTIAQTRVELVEEGE
MKNQRRESMSTGSKRDVTDHPWSSDEDSEPARGPASQGRSGDRRREATVD
AGSKPGPCTRAGAVDPSAQHNGRHLEEKQAGSSRLDAMDNEEEHRAESKD
SQRSGAPRTDHEGKALPMVQRGVPTSSRRPTREAVFLSEPYFGPPTVACP
RAWPAESTNTMASATDGRHGHHARRSHLADYSSSASDDLQDKQWAGEPAM
ESKGNR*
back to top

mRNA from alignment at Ecto-sp13_S_contig7823:986..3014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7823.19077.1 ID=mRNA_Ecto-sp13_S_contig7823.19077.1|Name=mRNA_Ecto-sp13_S_contig7823.19077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7823:986..3014+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAGGAGAAGGATTCGTTGGCTCCACTAGCTCGGGCAAGAGTGCAGAC
CAGTCTCTCTTACATGACGACGAAAATAAACAAACAGAGTGTTTGCTATC
AACGTCGCGTACGAACCATCGTCGGGCATCGACTAACGGAACCTGCCTTC
CCGGGGGCGAGTCACAACCAGCAATCGAGGTGCGGGACCGCATGGACTTT
TATATGCAGGGAATCCTTCTATTTTGTCTGTAATTTGATGAAGTACGTAA
GAACATCATGGCCGTCCATCTACCTCTTGCCTCCCTCTCCTGTCGCCATA
CCCCCTCAGGGTTGACGATCAACGGCATAGCCTTTTCCCTTCATCTCCTC
CCCAGTCCCTTCCGTTTCGGGCAAGAGACCGGCCATGGGCCGAGGAAAAC
ACATAGTCGGATGGAACGGGGCGAATGGTGTATTGCCTCGACTGCGTAGG
GTATAGGGCCCCCACGTGGCTGTTTGGGTTGCCACGCTTTAAGACACGCT
TGGCGAGGCAGTCAATGTCAACACGAAGGAACGTTGCGGTGGTGTTACAT
GTTTCGTAGTACAGCGACGTCCCCGTGCGTGCGTGTACGTTTCGCCACTC
CGTAAATACCTGCACGAGGCTGCGAAGAGTATCGCCGGTGTGCGTGTCCT
TCCGTGCCCCCACATAAAATACCCGTCTCTCTGCTGGTGAACGAAAACAG
GAAATCGACGGAGAAGGTTTGCTCGGCGAGAGCGATGCAGGAAGGGAATC
GGAAGCCACAACAAGCAACAACCAGATGAGGGCAACAAAGGAGCGGTTTG
ACTCGTACCGAGAGTTGGTCGAAGAAGAGACGACCAGGGTCCCTGGAAAT
GACGAGGCGGAAGACAATCCTTCCGCAGCACCGGTATCCGAAAAGGAAGA
GAACATGCCGGCGGGCACGAGAAGCGGGTATAGATCAGGAAAGGGCGAAC
AAACTACCGTTGGGGCCGAACAAGGACATCCAAGCTCTAGCGACACCGAG
GACATGAAAATTCTGCCGCAAGGCGTGGACCAGAATAAGGAGGAAGACCA
GAAGGAGATGGAGGGAGGGTGTCGAGAGGGGCAGCGGAACGGCGACGGGA
TCGCACCCGGGACGGCACCGCTGGAGTTGTCTGGTGGGAGCGACAACCGC
GTTCTCCAGGACACAGGAAAGCCTGACCGCCGAGCAAAACCTGCCGCCGT
AGAGTTGAGCACCGCAAACCCAGAGCCGTCAGCTACCTCTCGGGGTTTTA
TGGCCAAAGGATCAGCTGGTCGTGATAGCAAGGAAAGCAACGCGGCTCTA
TGCGTGACTTGGAGGGGAAAGCCCATGACGTTGACAGAACCCGTCTTGAT
AAGCCTGAAGGAATCAACCATCGCACAAACTCGCGTTGAGCTTGTGGAGG
AGGGCGAGATGAAGAACCAGCGACGGGAGAGCATGTCGACTGGCAGTAAA
CGGGATGTAACCGACCACCCGTGGTCGTCGGATGAGGACTCGGAACCAGC
ACGTGGTCCGGCCTCTCAAGGACGCAGTGGAGACAGAAGGCGAGAAGCGA
CCGTAGATGCCGGAAGCAAGCCCGGACCGTGCACCAGAGCGGGAGCAGTC
GATCCCTCTGCTCAGCACAACGGAAGACACTTGGAAGAGAAACAGGCCGG
CTCGAGCAGACTCGACGCTATGGACAACGAGGAGGAACACCGCGCCGAAA
GCAAAGACTCACAACGAAGCGGCGCTCCACGAACTGATCATGAAGGCAAA
GCATTGCCGATGGTCCAGCGGGGTGTGCCGACTTCCTCGCGAAGGCCAAC
ACGAGAAGCGGTTTTCTTGTCCGAGCCGTACTTCGGCCCGCCTACCGTCG
CATGCCCACGCGCTTGGCCCGCCGAGTCAACAAACACAATGGCTAGCGCA
ACAGACGGGCGTCACGGACACCATGCCCGACGAAGTCACCTTGCTGATTA
CAGTTCAAGCGCTAGCGATGACTTGCAAGACAAGCAGTGGGCAGGGGAGC
CGGCGATGGAATCGAAGGGAAACCGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7823:986..3014+

>mRNA_Ecto-sp13_S_contig7823.19077.1 ID=mRNA_Ecto-sp13_S_contig7823.19077.1|Name=mRNA_Ecto-sp13_S_contig7823.19077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7823:986..3014+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAGGAGAAGGATTCGTTGGCTCCACTAGCTCGGGCAAGAGAAATCGA
CGGAGAAGGTTTGCTCGGCGAGAGCGATGCAGGAAGGGAATCGGAAGCCA
CAACAAGCAACAACCAGATGAGGGCAACAAAGGAGCGGTTTGACTCGTAC
CGAGAGTTGGTCGAAGAAGAGACGACCAGGGTCCCTGGAAATGACGAGGC
GGAAGACAATCCTTCCGCAGCACCGGTATCCGAAAAGGAAGAGAACATGC
CGGCGGGCACGAGAAGCGGGTATAGATCAGGAAAGGGCGAACAAACTACC
GTTGGGGCCGAACAAGGACATCCAAGCTCTAGCGACACCGAGGACATGAA
AATTCTGCCGCAAGGCGTGGACCAGAATAAGGAGGAAGACCAGAAGGAGA
TGGAGGGAGGGTGTCGAGAGGGGCAGCGGAACGGCGACGGGATCGCACCC
GGGACGGCACCGCTGGAGTTGTCTGGTGGGAGCGACAACCGCGTTCTCCA
GGACACAGGAAAGCCTGACCGCCGAGCAAAACCTGCCGCCGTAGAGTTGA
GCACCGCAAACCCAGAGCCGTCAGCTACCTCTCGGGGTTTTATGGCCAAA
GGATCAGCTGGTCGTGATAGCAAGGAAAGCAACGCGGCTCTATGCGTGAC
TTGGAGGGGAAAGCCCATGACGTTGACAGAACCCGTCTTGATAAGCCTGA
AGGAATCAACCATCGCACAAACTCGCGTTGAGCTTGTGGAGGAGGGCGAG
ATGAAGAACCAGCGACGGGAGAGCATGTCGACTGGCAGTAAACGGGATGT
AACCGACCACCCGTGGTCGTCGGATGAGGACTCGGAACCAGCACGTGGTC
CGGCCTCTCAAGGACGCAGTGGAGACAGAAGGCGAGAAGCGACCGTAGAT
GCCGGAAGCAAGCCCGGACCGTGCACCAGAGCGGGAGCAGTCGATCCCTC
TGCTCAGCACAACGGAAGACACTTGGAAGAGAAACAGGCCGGCTCGAGCA
GACTCGACGCTATGGACAACGAGGAGGAACACCGCGCCGAAAGCAAAGAC
TCACAACGAAGCGGCGCTCCACGAACTGATCATGAAGGCAAAGCATTGCC
GATGGTCCAGCGGGGTGTGCCGACTTCCTCGCGAAGGCCAACACGAGAAG
CGGTTTTCTTGTCCGAGCCGTACTTCGGCCCGCCTACCGTCGCATGCCCA
CGCGCTTGGCCCGCCGAGTCAACAAACACAATGGCTAGCGCAACAGACGG
GCGTCACGGACACCATGCCCGACGAAGTCACCTTGCTGATTACAGTTCAA
GCGCTAGCGATGACTTGCAAGACAAGCAGTGGGCAGGGGAGCCGGCGATG
GAATCGAAGGGAAACCGGTGA
back to top