mRNA_Ecto-sp13_S_contig7814.19068.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7814.19068.1
Unique NamemRNA_Ecto-sp13_S_contig7814.19068.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 2.330e-129
Identity = 202/204 (99.02%), Postives = 202/204 (99.02%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGRPLLXXXXXXXGFPLPHKGKLTKQDPEFECPLCHFQAR 1044
            MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGRPLL XXXXX GFPLPHKGKLTKQDPEFECPLCHFQAR
Sbjct:  292 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGRPLLFXXXXXTGFPLPHKGKLTKQDPEFECPLCHFQAR 495
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.900e-49
Identity = 100/211 (47.39%), Postives = 128/211 (60.66%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSG---------RPLLXXXXXXXGFPLPHKGKLTKQDPEFECPLCHFQ 1038
            + EGRT+ PPLLSESDLI LMD   IGTDATIAEHI+KIQ+R YA +  + RF PT LGLALVDGY+ +G ++S P LR A E DC  ++R E  +   + RC+S MK  F+ C + AH LD A+  HF  LG+     R       F+ CG CGT MDL+ + +G         RPLL       G PLPH+G++    P   CPLC ++
Sbjct:  308 LTEGRTEPPPLLSESDLIQLMDANRIGTDATIAEHIKKIQERGYAERCHESRFRPTVLGLALVDGYEALGLKLSQPLLRQAQEQDCKLVARRELARADAIARCLSVMKPAFEKCVSDAHVLDAAIGAHFGALGA-----RAACVTAAFAACGNCGTRMDLRVTDAGXXXXXXXXARPLLYCTTCRRGLPLPHRGEIALATPGVACPLCAYE 513
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: A0A7S0G8W9_9STRA (DNA topoisomerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8W9_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.260e-46
Identity = 96/218 (44.04%), Postives = 134/218 (61.47%), Query Frame = 1 
Query:  427 FKMDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSG---------RPLLXXXXXXXGFPLPHKGKLTK----QDPE-FECPLCHFQ 1038
            F M +GRT  P  +SE +LI LMD+ GIGTDATIA+HI  IQQR+YA ++ Q +F+PT LG+ALV+GY+++G+Q++ P LR   E +C  ++ G  +K+ ++   +SKM++CF    A AHKLD AVA HF+ LGS GG    +R  + FS+CG C   M LK+             R +L       G+P+P +G L      QD E F CP+C FQ
Sbjct:  127 FLMKDGRTTPPLPISEVELISLMDRNGIGTDATIAQHIATIQQRQYATRDNQQKFHPTKLGIALVEGYNSMGYQLNKPDLRRETEAECNLVASGRKSKDQIIGPILSKMRDCFDRVNAEAHKLDLAVARHFQALGSDGGNFTVLR--QSFSKCGQCENLMTLKEMQDDNVQNRVRVKRKVLFCSTCAEGYPVP-RGDLAPYFNGQDREPFSCPICKFQ 341
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA)

HSP 1 Score: 172 bits (437), Expect = 6.120e-43
Identity = 99/225 (44.00%), Postives = 126/225 (56.00%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNE------------QDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGR------GFSRCGVCGTAMDLKKSSSGRPLLXXXXXXXGFPLPHKGKLTKQD----PEFECPLCHFQA 1041
            ++ GRTQ PPLLSE+DLI  MD+KGIGTDATIA+HI+ I QRKY                 Q RF PT LGL LV+GY+ IG+Q++ P LRA ME +C R++RGE  +  +V+ C+ KMKECF+ CQ    +L +AV  + R  G  GG       G       GFS+CG C   MDL++  S    L          LPH  K T +     P   CPLC F+A
Sbjct:  508 LETGRTQPPPLLSEADLISRMDEKGIGTDATIAQHIKTILQRKYVTXXXXXXXXXXXXXXLQRRFQPTNLGLGLVEGYEEIGYQLTKPELRAEMERECKRVARGERGRTEMVQACLLKMKECFEDCQNQWERLPEAVGKYLRRYGQGGGREXXXXXGTIRTMQAGFSQCGHCQGRMDLRRDKSVL-FLACETCAASHLLPHSRKGTSRPSTLTPPVLCPLCGFEA 731
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: B7G3B1_PHATC (DNA topoisomerase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3B1_PHATC)

HSP 1 Score: 170 bits (431), Expect = 3.360e-42
Identity = 95/228 (41.67%), Postives = 134/228 (58.77%), Query Frame = 1 
Query:  427 FKMDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSG-----------RPLLXXXXXXXGFPLPH---KGKLTKQD--PEFECPLCHFQAR*CVIGE 1062
            F M EGR+  P  +SE +LI LMD+ GIGTDATIA+HI  I  R+YA K+ + +F PT LG+ALV+GY+++G+Q++ P LR  ME +C  ++ G  TKE ++   ++KMK C++T +A A KLD+AVA HF  LG+    S+ V     FS CGVC  +M LK+               R LL       G+ LP    + K  ++D  P  +CP+C FQ    + GE
Sbjct:  561 FLMKEGRSGPPQPISEVELISLMDRNGIGTDATIAQHISTILDREYARKDGRQKFLPTPLGIALVEGYNSMGYQLNKPDLRREMEAECNEVASGRKTKEEIMVPILAKMKSCYETARAEARKLDEAVARHFPRLGAGESTSQVVE--ESFSECGVCRNSMALKQERENNNRTTARNTVRRKLLYCSTCRAGWTLPRGVVRPKTEQEDNGPPVKCPICQFQVIRILRGE 786
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: A0A7S0D577_9EUKA (DNA topoisomerase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D577_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 1.080e-41
Identity = 95/202 (47.03%), Postives = 124/202 (61.39%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGRPLLXXXXXXXGFPLPHKGKLTKQDPEFECPLCHFQ 1038
            ++EG+T+ PPLLSE+DLI LM+Q GIGTDATIAEHI K++QRKY   N + +F P+ LG+ LV GY  +   M+ P LR  ME D   IS G+ TK+ V++ C+  MK+ + T       L   ++ HF PLG   G+S+T+R  R F+RCG CG  M L+KS   R +         F LP KG L   D  FECPLC FQ
Sbjct:  208 LEEGKTEPPPLLSEADLISLMNQNGIGTDATIAEHIDKVKQRKYVFVNNR-QFIPSELGIGLVQGYKRMEIAMATPALRQQMERDINLISEGKKTKDEVLQECLEHMKDVYLTVMENHGLLSAEISEHFPPLGE--GDSKTLR--RSFTRCGNCGRTMSLRKSGEKRFVRCEACSQSHF-LP-KGSLHPYD--FECPLCKFQ 400
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: A0A7S2LVS8_9STRA (DNA topoisomerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVS8_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.220e-40
Identity = 91/231 (39.39%), Postives = 128/231 (55.41%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSG------------RPLLXXXXXXXGFPLPHKGKLTK-------QDPEFECPLCHFQAR*CVIGEPG 1068
            M+ G+T  P L+SE +LI LMD+ GIGTDATIA+HI  I  RKYA K+   RF+PT LG+ALV+GY+++G+Q++ P LR  ME +C  ++ G  T++ ++   +SKM ECF+   A  HKLD+AVA HF  LGS   + R ++    F+RCG C     LK+ + G              LL        F +P   +  +       Q     CP+C FQ   CV  + G
Sbjct:  343 MNAGQTSPPQLISEVELIALMDRNGIGTDATIAQHITTIMDRKYAEKDGNQRFHPTKLGIALVEGYNSMGYQLNKPDLRREMESECNAVAAGRKTRDQILGPILSKMLECFKIVNAEVHKLDEAVARHFNNLGSDSSQYRVLQAN--FTRCGSCNGMTVLKQRTGGGSXXXXXXXXGGSKLLQCAPCSKSFLMPRYNREVRPGVNPNNQHEPLICPICQFQVVECVKDDGG 571
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: A0A6A5C7F2_NAEFO (DNA topoisomerase n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C7F2_NAEFO)

HSP 1 Score: 165 bits (418), Expect = 1.620e-40
Identity = 94/202 (46.53%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGRPLLXXXXXXXGFPLPHKGKLTKQDPEFECPLCHFQ 1038
            MDEG T+ PP LSESDLI  MD  GIGTDAT+A+HI+ IQ R Y +K   +RF  T LG+AL+ GYD IG+++S P LRA ME D   IS+G+ TK+AV+ + ++  K  F      AH LD AV  HF+P+G SG     VR    FS CG CG +MDLK+   G   L        + LP   K   +    +CP+C+FQ
Sbjct:  488 MDEGETRPPPHLSESDLISAMDSNGIGTDATVAQHIKTIQDRGYVIKRG-NRFEATNLGIALLQGYDLIGYELSTPNLRAKMEKDMMCISQGQITKDAVINQSLAMYKHVFMQICKSAHLLDKAVQQHFKPIGESGQSKVLVRS---FSMCG-CGNSMDLKEQD-GHRFLFCKNCKEAYNLP--SKCEYESISDQCPICNFQ 681
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: UPI001CFD67DF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD67DF)

HSP 1 Score: 165 bits (417), Expect = 2.290e-40
Identity = 94/202 (46.53%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGRPLLXXXXXXXGFPLPHKGKLTKQDPEFECPLCHFQ 1038
            MDEG T+ PP LSESDLI  MD  GIGTDAT+A+HI+ IQ R Y +K   +RF  + LG+AL+ GYD IG+++S P LRA ME D   IS+G+ TK+AV+ + ++  K  F      AH LD AV  HF+P+G SG     VR    FS CG CG +MDLK+   G   L        + LP   K   +    +CPLC+FQ
Sbjct:  488 MDEGETRPPPHLSESDLISAMDSNGIGTDATVAQHIKTIQDRGYVIKRG-NRFEASNLGIALLQGYDLIGYELSTPNLRAKMEKDMVCISQGQITKDAVINQSLAMYKHVFMQICKSAHLLDKAVQQHFKPIGESGQSKVLVRS---FSMCG-CGNSMDLKEQD-GHRFLFCKNCKEAYNLP--SKCEYESISDQCPLCNFQ 681
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BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Match: D2VSX3_NAEGR (DNA topoisomerase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VSX3_NAEGR)

HSP 1 Score: 162 bits (409), Expect = 2.570e-39
Identity = 96/203 (47.29%), Postives = 127/203 (62.56%), Query Frame = 1 
Query:  433 MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQDRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVVERCISKMKECF-QTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSRCGVCGTAMDLKKSSSGRPLLXXXXXXXGFPLPHKGKLTKQDPEFECPLCHFQ 1038
            MD G T+ PP LSESDLI  MD  GIGTDAT+A+HI+ IQ+R Y +K + +RF  T LG+AL+ GYD IG+++S P LR+ ME D   IS+GE +KEAV+ + +S  K  + Q C++ A+ LD AV  HF  LG   G+SR +  GRGFS C  C   MDLK+   G   L        +PLP K +   +  E  CP+C+FQ
Sbjct:  505 MDHGETRPPPHLSESDLISAMDSNGIGTDATVAQHIKTIQERGYVIK-KGNRFEATNLGMALLQGYDLIGYELSTPNLRSKMEKDMLSISKGEQSKEAVIHQSLSMYKHVYIQICKS-AYLLDKAVQQHFPTLGE--GQSRVL--GRGFSLCS-CKNPMDLKEQD-GNNFLHCKNCSDSYPLPSKSEY--ESIEDVCPICNFQ 697
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7814.19068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI2.330e-12999.02DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YM61_9STRA4.900e-4947.39DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A7S0G8W9_9STRA6.260e-4644.04DNA topoisomerase n=1 Tax=Proboscia inermis TaxID=... [more]
A0A4D9CZ97_9STRA6.120e-4344.00DNA topoisomerase n=1 Tax=Nannochloropsis salina C... [more]
B7G3B1_PHATC3.360e-4241.67DNA topoisomerase n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0D577_9EUKA1.080e-4147.03DNA topoisomerase (Fragment) n=1 Tax=Amorphochlora... [more]
A0A7S2LVS8_9STRA1.220e-4039.39DNA topoisomerase n=1 Tax=Skeletonema marinoi TaxI... [more]
A0A6A5C7F2_NAEFO1.620e-4046.53DNA topoisomerase n=1 Tax=Naegleria fowleri TaxID=... [more]
UPI001CFD67DF2.290e-4046.53uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
D2VSX3_NAEGR2.570e-3947.29DNA topoisomerase n=1 Tax=Naegleria gruberi TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7814contigEcto-sp13_S_contig7814:1..7259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score402.5
Seed ortholog evalue1.2e-109
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
Model size1003
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
Exons9
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
Cds size615
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7814.19068.1prot_Ecto-sp13_S_contig7814.19068.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7814 433..4462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464052.0767891-UTR-Ecto-sp13_S_contig7814:0..571681464052.0767891-UTR-Ecto-sp13_S_contig7814:0..57Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7814 1..57 +
1681464052.153911-UTR-Ecto-sp13_S_contig7814:4462..44631681464052.153911-UTR-Ecto-sp13_S_contig7814:4462..4463Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7814 4463..4463 +
1681464052.1737316-UTR-Ecto-sp13_S_contig7814:5477..56371681464052.1737316-UTR-Ecto-sp13_S_contig7814:5477..5637Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7814 5478..5637 +
1681464052.186039-UTR-Ecto-sp13_S_contig7814:5882..59721681464052.186039-UTR-Ecto-sp13_S_contig7814:5882..5972Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7814 5883..5972 +
1681464052.195765-UTR-Ecto-sp13_S_contig7814:7179..72591681464052.195765-UTR-Ecto-sp13_S_contig7814:7179..7259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7814 7180..7259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464052.0981379-CDS-Ecto-sp13_S_contig7814:432..5611681464052.0981379-CDS-Ecto-sp13_S_contig7814:432..561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7814 433..561 +
1681464052.109374-CDS-Ecto-sp13_S_contig7814:1318..13971681464052.109374-CDS-Ecto-sp13_S_contig7814:1318..1397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7814 1319..1397 +
1681464052.1204314-CDS-Ecto-sp13_S_contig7814:2823..29631681464052.1204314-CDS-Ecto-sp13_S_contig7814:2823..2963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7814 2824..2963 +
1681464052.1310072-CDS-Ecto-sp13_S_contig7814:3462..36141681464052.1310072-CDS-Ecto-sp13_S_contig7814:3462..3614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7814 3463..3614 +
1681464052.1413524-CDS-Ecto-sp13_S_contig7814:4347..44621681464052.1413524-CDS-Ecto-sp13_S_contig7814:4347..4462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7814 4348..4462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7814.19068.1

>prot_Ecto-sp13_S_contig7814.19068.1 ID=prot_Ecto-sp13_S_contig7814.19068.1|Name=mRNA_Ecto-sp13_S_contig7814.19068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
MDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHIQKIQQRKYAVKNEQ
DRFYPTTLGLALVDGYDNIGFQMSAPTLRAAMELDCTRISRGEDTKEAVV
ERCISKMKECFQTCQALAHKLDDAVAMHFRPLGSSGGESRTVRGGRGFSR
CGVCGTAMDLKKSSSGRPLLYCGVCDTGFPLPHKGKLTKQDPEFECPLCH
FQAR*
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mRNA from alignment at Ecto-sp13_S_contig7814:1..7259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7814.19068.1 ID=mRNA_Ecto-sp13_S_contig7814.19068.1|Name=mRNA_Ecto-sp13_S_contig7814.19068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7259bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7814:1..7259+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGAATATTCCAGAGTTCGGCCAGGGGCAAGAGTTCGGGCCCAGCGT
CCTCGTGGTGAGCTCTTTTTTTTTTCTGCTAACGGGTGGAGGGTGGGTGG
GTCGTGGACGGTGGCTAGACGGAAATGGGTATAGTGGGGAGTGGGGGACA
AGGGGTCGTCGCGATGAGGGAAAGTCGGTGTACGTGAGGAGGAAATGAGA
TTTAGCGACTGGGAACGAGGATTGGAAGAGAATGCGGTTGTGGTGAGGTC
GAAAGTGGCGCGAATGTTTGGGGGAAAAGGGATGCTAGCGACGTATTTTG
GGATGTGGAGAAACAGGTGGATGCACACTCACCCCCCCCTCGTAGGGCTC
AATTAGAAGCCTGAGGAGAGCCTCCTCAATTCAGTTTTTTGCTCGTCGTT
TCTCTTTCGTTCGTTTTTTTTTTTTTTTCAAGATGGACGAGGGTAGGACT
CAAGCACCGCCCCTCCTCAGCGAGTCGGACCTGATCGGGCTGATGGACCA
GAAGGGCATCGGAACTGACGCCACGATCGCGGAGCACATCCAGAAGATCC
AGCAGAGAAAAGTGGGTGTGGGGGCGACAACTGCATGGGGTAGGGCAGAG
GCGCATGCTCGCGCACGTCGTAGTAAGGCATTCTCGGCCTGATGCAGAAG
GTTTAAGGGAGAAAGGTGAGGGGAAAATGCCGTCCGAAGCATTTTTCCCT
TGTGTGCTTGTAAAGTGTTGATGTCTACGCCTAGAGATACGGCAAAGGCC
AGCGGAAAGCAAATCGTGCAGAGAAAGAGGAAACCTTACTAGGTGGCATC
GAGCGTTCATTAGTGCAAAATATCCACATGGAGATGGATCGACTGGTTTC
ACATGATGCAGAGAGCATACAGCGTTTGACACAACCCTTTGCCGAGGGAG
GCAACCGAAACGTTGTGGTAGGGCAGGTGCACAGCATAACTGTTGTTGGA
GGGGGCACCGGGGAGGATAGCTTACTTCCCCGTACGACAATTCGCACGAT
CGATTGCTTCTTTGCGGTGTAATTCATCTGCCTTTTTTTCCGGCTATTTA
AACCGTTTTGACCCGAGACGCCAAGTTTTGCATCAAGTGTCAGGATGTCC
TTCATAGCCCTCATCTTGCACAACAATTGGGACCTCGAAACCGAAAATAT
TACATTTACACGCTACACACGCCAACATCATGACGTAAAGCATCTAGCGC
GGTCCGATGCACTGAGCTGGCTGCCGGATTCTCGGCACGCCAGTGTTCCA
TGAATTTTCGCGCATGATTCGCCTCTAACCCACCCCCTTCTCTGTTTCAA
ACCCCCTAAACACTGTAGTACGCCGTCAAGAACGAGCAGGATCGCTTCTA
CCCGACCACGCTGGGGCTCGCCCTTGTGGACGGTTACGACAACATCGGTG
AGCGTCCTTGTGCATGCATTTTTTCCCCCCAGACGATCATGGTGTTGCTG
TTTTTCAGGTGTTGGTAGCGGGAGACGTTTGAAGCGACCATGCAGGCTTT
GTCTTTCTCTCGTATATCGATGGGTTGCAGTCTTTGGTTGTCACCAGGCT
TTCTCTTCGCGGAACATGTCGCCGCGAAATAGAGCCGGTACCAGCAGCTC
TTGGATGCCCGGCGAGCTCCGTGCATGCGCGGTACTGCATTGACGAGCCT
CCTGCGCGCCACTTGGAAGGAAGGGTGAGAAAGCACACTCTGCCGCCAGA
AAAAGAAGCGCCGAAGCACGAAACACGGCGACCAACAACTTGTACGCCTG
CTTCTGCGTACAGATTTGTAAATTCCTCTTTGGTTTGCGTGATGTTCGCT
TGTCAAAACAAGTCAGCTGTGTGAGCTGTTGAGCTTGGGAAACGTGACTA
CTCCCAGCTGGCAGCCAGCTGTGGGCTGGTCGTTCTGCCTGCTTTGTTTT
TCATCTCGCATCGCCCCTTGATGGCACCGCGGTGCTCCCAAGCTCACTCC
GGAGGGATCCCTTGAAAAACATGTACGCATATCTAAAACATGACATTATA
GAGCTGGACTATCAGCTTCTGCTGCGTGCTTGAAATTGCTACACAACGCA
AGCAACGCAAGCCTTGGAAAGCAGCACCTTTCCAAAACAAGGCACGAAGA
CGCGCTTACGCCACAGCTACCCGCAGACGAACCTGACTGATCATACGGCA
CCTCTACCCTATGCTCATGTTGCTTCTTCGAGTGTACGCCGTCTCGTCTA
CTTGGTGTTCAGCATCGGGTTCAAAATCGGTTCCCCGGGAGCGTGTAGTT
TGCAGCCTACACCAAGACAGAATTTCCGCTCACGTTCTTCACAGCCGCTG
ATGCCAATACTGGCTCTGGTCATCATCAATGGATGGCGGCGTCATCGCAA
CGTCCAACAACATTTCTCGTTTGCACTTCCCAGCGGGTAGAGCGGTACAC
TGTTGTCGTAGATGAAGCCTGAGCACATGCACCCAGAGCGTTGGCGATGA
GTGTGCGCTCGCGCCTCTGCTTGTGGTGTTGTTTCGCATTCAACATACTG
CAGTAGGAACATCGCTCGCCGAACCAGTGCATGGGTCTTTTTTTGAATCT
TGTTGGCGTTATATTCTCCCGACCTGGCTTCAAGACATGCCAATGCGATT
TTTTATACGGAAACGGCCACTGCGTTTGCCGATCATTAAGGACGATTGCA
CATCCCGTGGAAAACGATTGGGCTTCTTGTCTCGCGTCACCTTCGAGAGC
CTCAACTTCCACGTCCTGAAGGGGAGCCTTGAATATGTACAGCTGTCTTT
CCTTTCGTAGGCCGATTTCAAACACCGCTGCGTTGCTGGACCCCCCCCCC
TCTCAAAAACACGCCGCTTTCAGGTTTCCAGATGAGCGCACCCACCCTGA
GAGCGGCGATGGAGCTTGACTGCACGCGCATCTCTCGAGGGGAGGACACT
AAGGAAGCCGTGGTGGAGAGGTGCATCAGCAAGATGAAGGAGTGCTTTCA
GACTTGCCAGGCGGTGCGTGTAGCCGACGGCTGTGTACGTAGCAGGGCGA
AGCAGCGCTTGGTGTAGATGCTTTGTCAGGCGTAGCGCGTACGCGTCTAT
TCGGTGGTTACGTGGAGCGGCGCTTCTGAAGACGTTGACCGGCCGTGGGC
GTTTCCCACAGCTTTCTTTTATTTATTTTGTGCTCCTTTCGCACTGTAAG
CGACAAATATTTTTTGTAGTGACACTCGATGAAGTTGGCGAAGTGTGTAC
CACAATAATGTTGTTGTGTCCGTTGCATTGCTCGCTCTCAAGCAAACGTG
ACAGCCCAATGGCCCCCGTTCCCACACACGAATTTCTTATTGGTTTTCAT
TTCTTATTTACACTTGGGAAAAAAATTCCTTGATTTGGTCACCTTGACTT
GCTTTTATACTGAAGATCAAATAGTTGGCCTACCGAATAAAATAAAGTCA
AGTATTTTGTTCATTTAGTTTTCGTATCCCCTCTTCAATTTGCGTCATAC
TTTTTTTTCCAGCTTGCCCATAAGCTCGACGATGCAGTGGCGATGCACTT
CCGTCCCCTTGGATCCTCGGGGGGCGAGAGCCGGACCGTGCGGGGAGGGA
GGGGGTTCAGCAGATGCGGCGTGTGCGGGACTGCGATGGACCTCAAGAAG
TCGTCGTCGGGAAGGTGAGAGCTCATGTCGGGGTTTGACGGTGCTGGCAC
AGGTTGGGGAGATATTACGGAAAAGCTTACAAAATCGGAGCGAGCGCGAG
GTAGTACATGTTAGTTGTTCGAGTGCTCTTTCCCAGAGATTAAAGTTTAT
TGTTTTGAAGTCTGTGTGGCTGTCTTTGTTTTTACTCTAGTTTCGGGGCA
ACTAATTCGTCAATTCGGGACAGTTTCTTGTCATTTCGTGGGCAAATATC
GAGGTTTTTATTGCCAACAATGGCCGTGTTCGGATAGATTTCACACCAGC
TTTCGATGCCTTTCGGCCGTGCGGTTCGTGCCAACTTTGTTTCGAGTGTC
AAATGTCCAAATTGAGGGAAAAAAAAGTAGGGTGGCGGTGGCGACAAAAT
TTAACTGGACAGACTCCACCAACTACTCGTCTGCGCTGTCCGCCCGCGGC
TGACGCACCTTCTCGGCTGATGCTCCGAAAGAAGTGCACCGGCGTTTCTT
TGTTCGAGCAGCATTGGCGCCGCCTCATCAAACCTCGTACCCCCCCCCTC
TAACGACAGCAACACCCACGACCCCCCCCCGCGACAGCATCAAGCAACAG
AGGGACTCTACCAATGTCTGCTTTTTTTTGCTGTGTTCTCCTACAGATTT
TGACAGCCTGGCTAGTCTCGCTTGGCGCGCCCGCTGCGCACTCCTAGCAA
CGCCCGCCTCCCCCCTTTCGCACCGCCGACATCAACAACAACCCCAGGCC
TCTACTCTACTGCGGCGTCTGCGACACGGGGTTTCCGTTGCCGCACAAGG
GGAAGCTCACCAAGCAAGACCCGGAGTTCGAGTGTCCCCTGTGCCACTTC
CAGGCAAGATGATGTCTACATTTTTTTGGTGTGGCTGTGTAAAGTTTTTT
TTGTTCCCTTTCCAGAGCTGACGATCGAACGGGTTTCAGTGTGCTTTGAC
GTGTTGCTGTTCATGCCTTCGTGAGTGTTGGCGCTTCCGCACGCCCCCTT
GCATCCCTCCTCGACCCGCACGTCCTATCTTACGTGGCGTGGTGTTTTTT
TTGCGGATTTTTTTCGCTCGAATTAATTTTGGCGGCAGAGGCTACCTCGA
TGTCGGTATCGGATGTTCCGTACGAGACACAACGTGAAGCGACCGCGGTA
CCGTTTGATTTTCTCGTGTAGGTGACACCGTGCCTTGGGTGCTGCCGAAT
GGTGTACGGCGCTCTGTTGCTGTGTGCGTTGGGAATAAGTAGGCGTGGGC
GTTTCCTTGAAACAAGAATGTGATGCAGTCAGTCGTTTGTTGTTTTGGTG
ACCGGTCCGTTCATACTTAACTCGAAGCTTCTGAAATCCATACGACCTCC
GACTGTTGTGTCTATTTCTTCTTTTCACAGAAACAGATGTGGATGTCATT
GTGCGTCCGTTCACAGTACCAGAAAACAACAAAATACAGACCGCTGGAGC
TTCTCGGGGATTTTCTTTCGTTGCGACGCCACGCCTGTTCAGAACAGTGC
ACCCTCGTTCGGCGAGAAAGATAGAACCCGTGTCTTGCAAACATGCGTTG
AATGTCGATATCCTCGGGTAATGCATGCGCGGCCGTGCGCTAGAGGGCGA
GCAACCGATCTGTAAACCACCCTCCGACGAAGTTATTCCGGCCCGGACCA
TCGACGGGAGCTGGCACGTGTTCTTGGTGCAAAAACAGCGGTGTTGGACG
TGCGCATGCAATGACCCTCTACGACGTTACTACAAGGCATTTTTTTCGGA
TCTACCATCAAATGCGAACGGGGCTGAACATCAAGTTACACATGACAGCA
CAGCTTCGCTGTCAACCGTTTTTACTGTACGTGGAACGTACCGGGTGGTG
TCAAACCTGGTTTTCCAACCGACCCAGGTGTTATCGGTGAGCCCGGGAAA
CGACTACACCGGGGCGGGTTACACGGTGTGCCCGTACTGCTTCAACAACG
CGCCGGCGGCCCACGGGGGCGAGGGGCAGTCCCAGTTCCGGTGCTTCATG
TGCAGCGCGTCGTGCCCGCTGGCCAAGAGAGTGCAAGGTCGGCACGGGGG
GGTTGGTTTCCGTCCTGTATCTAGTGGTTGGTTATGGTCGCGGTGATTAT
ATGGTATTGTTGTTGTTGTTTGATGATGTTGTTGATGTTGTTGCTGTTGG
TGGTGGTCGGTGGTGGTCGGTGGTGGTCGGTGTTGTTGATGCTTTCGTTG
CGGGTGGTGGGTCTGTTGGTATTGCTGTGTGTACTGATCATGGATTACGA
TGAACACCCTGTCGCTCCTGACAACCCCTCAGGTGGCGACACAACCATCG
TGCGGTGCTGGAAAGCTGGCTGCGGGCAGGCTCTCAACATCAAGAGAACG
AGGACCGGCAACTACCACCTAGGTACGGCGGACGACAAGCTTGTCCTGTC
GTGCGTCCTTTCTTACGCCGTGCCCGTGTGTGGGGCGTGCTGCTATTTCT
CTCTTGATGCACTGCCCGCCACCACTTGCGGACCTGAGAGTCAAGAAACT
CAGGGGAAAATTGATTGAAAACTTGAATAGTAGACCATCAGAATAGGGAT
GTCGTTAGGATTCCTACGCTACAACCTGTACAGGTAGACGATGTTGGGAC
ACCGCACAGCGTCGATAATTAACGAGCCCCGGACAAGACGCGACGTCCAA
AAGTGGTGGCGAAGTGGTGGGCGCTCACAACAGTGTTCATTCGTGATGTG
TTCTCTTTCGTGTAGATGCCTGACTGGTGTAAGTATGTCTGTGATGTCAC
TTGAGAACCTCTTGATTTGGCCGAACATGAGACTCAAAGGGGTGCCGCGC
ACGGTATTCTTGATGCATTCCGTCGTGTTCGGGTTAGTTTCATGGCTGGT
GTAGGTGCGTTTGTGATTCGCTTGAGAACCTCTCGTTTCTGGGGGAAATG
AGAGGTTCCTAGGTGTGCCGCGTAGAACATTAGACTGTTGGTGATGTATT
CGCCTTTATTTGTGTTAATTTCCTGACCTGATATTGGCATCATTGCGGCT
GTTTTTTTTTCGTGGTTACTTTTCCTGTTTGTGGGGTCGACGTTTTTGGC
AGGTCTCCTTAAGCCTGTGTGCGGGAGTGCTGGGGGGTTCGTTTTCGGCC
TTGACGCGTCCAGTCGCGTTGTTGTGGTTGTTGGATCTCAGGGTGTAAGG
GGCACACCCCTTGTTGTGCACGGGATGCTCGAGATGACGTTTTCGTGTGC
TGAACAGCAACATCACCGTCACCGAGAGCTGGGGGGAGCTACAATGCAGA
CAAAACGACAATTAGACACACAGACAGACAGACAGAGGAAGACATAGACG
AAGAGACAGAGAAGGAGACAAGAGGAAGAGACAGAGAGAGGGAGAGAGAC
ATTTCCAATCTTCGCGTCCTGCCTGCATGATCCCGGTGTTTTTGCATTTC
GAGTCGAATATTCTAATTCATATCTTCGCAGAGCCGCCCTCCTTTGCTGC
AGGGGGGCGTCGCGACAACAATTATTTCCACGTTTTAGCGCAATTGATCA
TGGAGGGCTTAAAACTTGCAAAACTGAACGCGAATACCCCCCCCCAATGA
AATGAAAATATCGAATTAAATATTTGCAGGGTGCAAGGGCTATCCGGCGT
GCACGGAGACGACGGTGTGGCTACCGAAGAACGCGACCAACGTCTCGGTG
ACGGAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7814:1..7259+

>mRNA_Ecto-sp13_S_contig7814.19068.1 ID=mRNA_Ecto-sp13_S_contig7814.19068.1|Name=mRNA_Ecto-sp13_S_contig7814.19068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7814:1..7259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGGGTAGGACTCAAGCACCGCCCCTCCTCAGCGAGTCGGACCT
GATCGGGCTGATGGACCAGAAGGGCATCGGAACTGACGCCACGATCGCGG
AGCACATCCAGAAGATCCAGCAGAGAAAATACGCCGTCAAGAACGAGCAG
GATCGCTTCTACCCGACCACGCTGGGGCTCGCCCTTGTGGACGGTTACGA
CAACATCGGTTTCCAGATGAGCGCACCCACCCTGAGAGCGGCGATGGAGC
TTGACTGCACGCGCATCTCTCGAGGGGAGGACACTAAGGAAGCCGTGGTG
GAGAGGTGCATCAGCAAGATGAAGGAGTGCTTTCAGACTTGCCAGGCGCT
TGCCCATAAGCTCGACGATGCAGTGGCGATGCACTTCCGTCCCCTTGGAT
CCTCGGGGGGCGAGAGCCGGACCGTGCGGGGAGGGAGGGGGTTCAGCAGA
TGCGGCGTGTGCGGGACTGCGATGGACCTCAAGAAGTCGTCGTCGGGAAG
GCCTCTACTCTACTGCGGCGTCTGCGACACGGGGTTTCCGTTGCCGCACA
AGGGGAAGCTCACCAAGCAAGACCCGGAGTTCGAGTGTCCCCTGTGCCAC
TTCCAGGCAAGATGA
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