mRNA_Ecto-sp13_S_contig780.19052.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig780.19052.1
Unique NamemRNA_Ecto-sp13_S_contig780.19052.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig780.19052.1 vs. uniprot
Match: A0A6H5KVB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB6_9PHAE)

HSP 1 Score: 823 bits (2126), Expect = 2.800e-289
Identity = 504/620 (81.29%), Postives = 523/620 (84.35%), Query Frame = 1 
Query:  991 MRSSLGLPNAYCDVFDRIESRGAAWLVATGHVLLHAFDPPAREYAAXXXXXXXXXXXXXSKLPNDGKGVGGRRATRGEGRDGDRGDDGRDXXXXXXEQYRRLLDNCLEPPWYEKKIEKTAATTTAIEAVGGKAMPSLTAALTRLTNSSTSATSSLPSGTRSAKNKSIGQANSPAVTVAQPGSPSGNLQAQPRPSSTLSSPQTMTPLSLPSSAGTGRRRRSRSPSRRSHRQGGNRTGTRSPAANTGLPATTAVGLGGKTCAVCLRRSSPAAMCPKCGRRAAKSLKDREGSRKARVILVPYGGHFGVGEAGALQREGDSIKRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXXVAVVGSPNSAASVPRSTNPPAPGSXXXXXXXXXXXXXXXXXXGMAASGGIVHRTALVRRTMTAFSAASIAALRAAAGGTXXXXXXXXXXXXXXKSKNYDNDFDENNGNANKGTSSPRPIIKQAIKKAVAVSSPTSSPSPQRENASASPTAAAASPGRNRVVVRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELAGVKGVSPRPGTGMSGRKSHSQGTSRDSAGRGRRLRLTTAVTKGGG 2850
            M SSLGLPNAYCD+FDRIESRGAAWLVATGH+LLHA DPP R  A              S L NDGK  GGRRA  GEGRDG RGDDG+ XXXXXX QYRRLLDNCLEP W+EKK EKTAAT T IEAVGGK MPSLTAALTRLTNSSTSATSS+P  TRSAKNKSIGQ +SPAVTV Q GSP  NLQA+PRP ST  SPQTMTPLSLPSSAGTGRRRRSRSPSRRSHRQGGN TGTRSPAANT LPATTAV  GGKTCAVCLRRSSPAAMC KCGRRAAK+LKDR GSRKARVILVPYGGHFGVGEA ALQREGDS+KRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXX AVVGSPNSAASVPRST PPAPGS                  GMAASG IVHRTALVRRTM A S AS+AALRAAAGGTXXXXXXXXXXXXXX                NKGTSSPR II++A++KA AVSSP SSPSP ++NASASPTAAAASPGRNRVVVRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELAG+KGVSPRPGTG+SGRKS+S GTS DSAGRGRR RLTTAVTKGGG
Sbjct:    1 MWSSLGLPNAYCDIFDRIESRGAAWLVATGHLLLHALDPPPRGDAPAAGSDSSS-----SNLCNDGKDAGGRRAMSGEGRDGGRGDDGQXXXXXXXXQYRRLLDNCLEPSWHEKKSEKTAATKTVIEAVGGKEMPSLTAALTRLTNSSTSATSSMPDSTRSAKNKSIGQVSSPAVTVPQEGSPDNNLQAKPRPPSTPPSPQTMTPLSLPSSAGTGRRRRSRSPSRRSHRQGGNSTGTRSPAANTRLPATTAVEPGGKTCAVCLRRSSPAAMCRKCGRRAAKALKDRAGSRKARVILVPYGGHFGVGEADALQREGDSVKRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXXXAVVGSPNSAASVPRSTTPPAPGSPAARALPMARAATNPRAMGMAASGSIVHRTALVRRTMMALSTASMAALRAAAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTSSPRTIIERAMEKAAAVSSPASSPSPPQKNASASPTAAAASPGRNRVVVRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELAGMKGVSPRPGTGVSGRKSYSHGTSGDSAGRGRRPRLTTAVTKGGG 615
[Close]
BLAST of mRNA_Ecto-sp13_S_contig780.19052.1 vs. uniprot
Match: D7FS65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS65_ECTSI)

HSP 1 Score: 531 bits (1368), Expect = 2.700e-179
Identity = 287/318 (90.25%), Postives = 291/318 (91.51%), Query Frame = 1 
Query:    1 MVGNGGSRRKEDARYSDSXXXXXXXXXX-EPEGPPQKFVLAGDDTGSGIEYNILDAESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLTNLWACVLHRFSGILPTGTVDLDTRVNVELVREVITVLHETLDKKLDLLIDMLLEESQEVEIQGGVARTRGLSSTSSGGVGGTR----RTEEDGQRKVIHKSNGEEAEGARVQAQWRRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG 939
            MVGNGGSRRKEDAR+S  XXXXXXXXXX EPEGPPQKFVLAGDDTGSGIEYNILD ESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELL NLWACVLHRFSGILPTGTVDLDTRVNVELVREVITVLH  LDKKLDLLI MLLEES+EVEIQG VA TRGLSST             RT E+GQRK+IHKSNGEEAEGA  QAQ RRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG
Sbjct:    1 MVGNGGSRRKEDARHSXXXXXXXXXXXXXEPEGPPQKFVLAGDDTGSGIEYNILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLINLWACVLHRFSGILPTGTVDLDTRVNVELVREVITVLHTALDKKLDLLIGMLLEESEEVEIQGDVASTRGLSSTXXXXXXXXXXXXXRTGEEGQRKIIHKSNGEEAEGAPSQAQRRRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG 318
[Close]
BLAST of mRNA_Ecto-sp13_S_contig780.19052.1 vs. uniprot
Match: A0A836C822_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C822_9STRA)

HSP 1 Score: 182 bits (462), Expect = 6.940e-45
Identity = 115/323 (35.60%), Postives = 163/323 (50.46%), Query Frame = 1 
Query:  154 ILDAESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLTNLWACVLHRFS-GILPTGTVD--------LDTRVNVELVREVITVLH-ETLDKKLDLLIDMLLEESQEVEIQGGVARTRGLSSTSSGGVGGTRRTEEDGQRKVIHKSNGEEAEGARVQAQWRRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIGSRYWLRRRRPAFERGVDMRSSLGLPNAYCDVFDRIESRGAAWLVATGHVLL 1092
            +LD + WQ L  YC + G  +  +E+I++RFART+   EH DFT K  +HASLDF+ DEF  T GEF AQ+ +QTW+ +    LAP  DRR  DF RLVI+  DLA + + ELLT  WA  L  +  G    G+          L  + N EL RE + V+H +   + + L++D LL                       GGV                                   +++R +++ +F+HP L+FPVVQFQR LR +++G  YW +RRRP    G+   ++  LP A  D+ DR+ S  AAW+  TG +LL
Sbjct:    1 MLDDDQWQLLAEYCNERGFGKREVEAIHARFARTLNSEEHSDFTKKKIHHASLDFIQDEFYNTGGEFVAQLLLQTWYQQPHAMLAPQSDRRQFDFARLVILSCDLADMSNAELLTAFWASALQCYGCGTAGGGSGGGSSSWERALHLQANTELARETVEVIHRDARPRSVSLVMDELLPP---------------------GGV-----------------------------------VSVRDLIQAAFEHPALLFPVVQFQRTLRRRLMGRAYWQQRRRPLAVPGLPC-TAAALPQAADDLLDRVRSYRAAWVATTGTLLL 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig780.19052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVB6_9PHAE2.800e-28981.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS65_ECTSI2.700e-17990.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C822_9STRA6.940e-4535.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig780contigEcto-sp13_S_contig780:2539..8721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2853
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000720.1
Cds size2853
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig780.19052.1prot_Ecto-sp13_S_contig780.19052.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig780 2539..8721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464050.6449847-CDS-Ecto-sp13_S_contig780:2538..27361681464050.6449847-CDS-Ecto-sp13_S_contig780:2538..2736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 2539..2736 +
1681464050.6552033-CDS-Ecto-sp13_S_contig780:3268..33941681464050.6552033-CDS-Ecto-sp13_S_contig780:3268..3394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 3269..3394 +
1681464050.6642704-CDS-Ecto-sp13_S_contig780:4350..45501681464050.6642704-CDS-Ecto-sp13_S_contig780:4350..4550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 4351..4550 +
1681464050.6745353-CDS-Ecto-sp13_S_contig780:4727..48871681464050.6745353-CDS-Ecto-sp13_S_contig780:4727..4887Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 4728..4887 +
1681464050.69373-CDS-Ecto-sp13_S_contig780:5405..56581681464050.69373-CDS-Ecto-sp13_S_contig780:5405..5658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 5406..5658 +
1681464050.7056017-CDS-Ecto-sp13_S_contig780:6805..87211681464050.7056017-CDS-Ecto-sp13_S_contig780:6805..8721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 6806..8721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig780.19052.1

>prot_Ecto-sp13_S_contig780.19052.1 ID=prot_Ecto-sp13_S_contig780.19052.1|Name=mRNA_Ecto-sp13_S_contig780.19052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=951bp
MVGNGGSRRKEDARYSDSSDDDDDDEDQEPEGPPQKFVLAGDDTGSGIEY
NILDAESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQY
HASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLV
IMCSDLARLGDYELLTNLWACVLHRFSGILPTGTVDLDTRVNVELVREVI
TVLHETLDKKLDLLIDMLLEESQEVEIQGGVARTRGLSSTSSGGVGGTRR
TEEDGQRKVIHKSNGEEAEGARVQAQWRRYLTLRSILRFSFQHPPLMFPV
VQFQRVLRCKIIGSRYWLRRRRPAFERGVDMRSSLGLPNAYCDVFDRIES
RGAAWLVATGHVLLHAFDPPAREYAAAAAAAAASDSSSSSKLPNDGKGVG
GRRATRGEGRDGDRGDDGRDDEERREEQYRRLLDNCLEPPWYEKKIEKTA
ATTTAIEAVGGKAMPSLTAALTRLTNSSTSATSSLPSGTRSAKNKSIGQA
NSPAVTVAQPGSPSGNLQAQPRPSSTLSSPQTMTPLSLPSSAGTGRRRRS
RSPSRRSHRQGGNRTGTRSPAANTGLPATTAVGLGGKTCAVCLRRSSPAA
MCPKCGRRAAKSLKDREGSRKARVILVPYGGHFGVGEAGALQREGDSIKR
WVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARRRRKVGDGG
GGVVAVVGSPNSAASVPRSTNPPAPGSPAARALPMARAATSPRAMGMAAS
GGIVHRTALVRRTMTAFSAASIAALRAAAGGTANGGDRNDGEDDDRKSKN
YDNDFDENNGNANKGTSSPRPIIKQAIKKAVAVSSPTSSPSPQRENASAS
PTAAAASPGRNRVVVRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAV
AAELAGVKGVSPRPGTGMSGRKSHSQGTSRDSAGRGRRLRLTTAVTKGGG
*
back to top

mRNA from alignment at Ecto-sp13_S_contig780:2539..8721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig780.19052.1 ID=mRNA_Ecto-sp13_S_contig780.19052.1|Name=mRNA_Ecto-sp13_S_contig780.19052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig780:2539..8721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGGCAACGGAGGCAGTCGTCGAAAGGAAGACGCTAGATATAGCGA
TTCTAGTGATGACGATGATGACGACGAAGACCAAGAGCCGGAAGGACCGC
CGCAGAAGTTTGTGCTCGCCGGGGACGATACGGGCAGCGGCATCGAATAC
AACATCCTAGACGCAGAGTCTTGGCAGAAGCTGGAGCACTATTGTAAGGT
ATGTACGCTCTGTCGTGCACAAGGTGACCAAACCTGTGTATGCTGCTATT
TACGATGCCAATTCCTAAAGGATCTTGTACAGAACGTATCCGCGAATTTC
ATCGCGCTCGCGTTCGAACATGATGGCACGAAACTCCGCCGTGACAAACT
TCACCGTGGTCCTTCGATAGAGAGTTCACGACACAGGTCGACTACAGATA
TTCTTCGTCTTATGTGATTTCCAACCGTGTTGTTGTCGCCAGCTGTTCGT
AAATATCAGTCATACTACCGAATAATTTGGATTCTAACTTGCTGTTCCCA
TGAAGACACGCTTGCTTGCGTCTGCTAGACTCCACGTGATTTTTCGTCCT
CGAAGATGAAGTTGTTTTCCCAGCGTGAAAATCGGGCTCAGTAACAGCCA
TAACAACAACGTTGTTGTTCTGGCTGTTACTGAGCCCAATTTTCAAGCTG
GGTTCTCCTTGCAGAGGTGTCCACGATCTTCGTCTGATGCTACCACAAAG
TCAACTTAGTCTTTTTACGGATGGTGACAGAAATGGGGCATCAAGCAGGC
GCACCTCGAGTCGATCTACTCTCGGTTCGCCCGCACTATTATCAGGACGG
AGCACCTGGATTTCACGCTCAAGCCCCAGTACCACGCAAGTCTGGATTTT
CTGGCGGTAAGAGGGGGAAAACAGGGGCAGTAGCCTTCCCAGGTTTTTTC
GTTTGTCAACATGTAGATAAAGCATGCGATCGGGGAATTTCTATTAGGGT
CAGGGATAGGGTCTGCGTACGTACCCCTCTCCTTCATCTAATTCCTGACA
ATCTTAACTTCTCGCGAAGGCGGTCCAACGTGCAAGAGGCGCCGATATGT
CGAAAGGACAGAGAAATAGGGTTTCCTTATCGTTTCTGTGCGAATTCGCA
GACAAAGGTTTCACACGCACACCCGTAAGCTGCACGCCGTCGCTCCTACT
TCACCTACTGCGGCATGATGTTCTACCGTACCCTCTTTAGCAAACCGACA
AAGCACGGTAGGTGATATTTTAATTAATCACTGGGTCCATCCACACTGCG
GGCTGCGGTCGCCACCAAGACCTTCCAACACTGCTAGCGCGTTATTATTT
AGTCGGTGGGTCTGTTGAGAGAGGATTTACAATAGAGAGGCTGCCCCTTT
GCCCTGGTTCGTGATAAACCTGACAACCTTTCGGCGGTCATACGATGATG
GCCACACGGCCTCCCCGCTTCTTGGTATTCTTGGAGCTAGGATCATGGTA
AGAGGTGTAGTAGGCAGAGTCCTTCCCTGCGCTTCATTCCAGACGAAATC
TGAGTCTATCACGTTAGCATGGCTATGCTGGGGTTGTAGCGCTCGCGATT
GAAGCATGCACACTTTCTTGTGCCAATGACCGGCACCGCACAGATTCATA
AGGATAAATACCCCACCTGCTTACAGCATGTTCTGAGGTTGCGTTCCTCC
TTCTGGACCCACGTATGGTTGCATCAATACATCGATCATACGAATGACCA
AAAGCTACAGCTGCAGCTACAAGCAGCAGTAGCAGCAACAGCAACTAGCA
ACAACGCAGTCACGTCCCCCCCGTCTCCTAGAACCGACCAACCAATCGAT
TGCTTTTCGAAGGACGAGTTCATGACGACAGCCGGGGAGTTCGCCGCACA
GATCTTCATCCAGACGTGGTTCTTGCGCCGCAAGCGAGGGCTAGCACCGC
CGCAGGATCGGCGGTGTGTCGACTTCACTCGGCTGGTCATCATGTGCTCC
GATCTGGCACGCCTAGGGGACTACGAGCTGTTGACCAACTTGTGGGCATG
CGTCTTACACAGGTAAAGGCGTGATGGTTCGCGCGTATGAACCCTTCAAG
ACTTTATTGTCAACCGCCACATCTGTAAACGGCCAGCCTCTCTTAAGCGT
AAATGAGACGAAAAAATGTTGTTCACGATAACTAATCATCTATAGACTTC
GGACACCAACCCCTGACTAAGCCCCAATAAACCTATCAGGTTCAGCGGCA
TTCTACCCACTGGCACGGTCGACTTGGACACGCGAGTCAACGTCGAGCTG
GTTAGGGAAGTGATCACTGTGCTGCACGAGACCCTCGATAAGAAGCTCGA
CCTCTTGATCGACATGCTCCTTGAAGAGTCCCAAGAAGTCGAAATACAGG
TTATGAAGCCACAGCCACCCGGCCGCTTTCTACTGCTCATCCCATCATAT
GTGCATGTTGGGCTAAGTAGTCCCCGCGAATGACGGCTGTGGTCTAATTG
GCATCATCCCGACTGTTTCTTCCTTATGCCCCCCGGTCCCCCTCCTGTGG
TGCGTGGTTGAAATTTGTGGCGAGAGAGGGGCGCTAGTCTAGCAGGACAC
AGGTACTTGAGACAAACAACATGTGCTTGGGCTTCAGGGTGTAGACTGGG
CTGTTCAATTTCGGCAACTAAATGCGTTTCAACGGTAGCCGTAACCCGCA
GCAAGTAGTTGCTGACATCGATCCCTCCTTTGCATCATCATTTCATAGAA
TCACCAGATGATTCGCAAAAAAAAGGCGAAGGCTCGGCCTTTGAAGACCT
ACTTCTCACATGCTCTATGATCATGCCTAGAAACGTGTGTAAACACGTGA
ACCGTAACCTATATCTTCACCCTTCATCTGTTTTTTCCGGCTTTTTCTCT
GGTGTTCCCAACAACAGGGGGGCGTTGCGAGAACGCGGGGGCTTTCCAGT
ACCAGCAGTGGCGGCGTTGGCGGAACAAGAAGGACGGAGGAGGATGGGCA
ACGCAAAGTCATCCACAAGAGTAACGGGGAGGAGGCGGAGGGGGCACGGG
TGCAAGCGCAGTGGCGGAGATACCTGACGCTCCGGAGCATCCTCCGTTTT
AGCTTCCAGCACCCCCCCCTGATGTTCCCAGTTGTGCAGTTCCAGCGAGT
CCTCAGGTGTAAAATCATCGGTGAGGAGGGGAAGGAGGGTGGGGGTGTAA
AGTGCTCCTCTCGTTTGCTTCGATAAGGATTGTATCAGAAAGTCTCTCCC
ATTAGACTCCTCAGTCAGCGCTGAATTGTGTAGTCTAAAAAATGGTTTGA
CATTTTGCTAACAAAAGATACACTCTCGGTTCGTCACCACCCGGCTGGTC
ACTGGGATTAGAAGGAGGGATCTCCGGGGACGGACCCCTCGCCAGGCGCT
GCCGGAGAAGAACTTAGTGATGCTTGTGTAGCTGGCCAGCCGGCATTCGA
ACCCGTGCGTGTAGCCTTTGTTACAAAGGCTTACCGATTAGATTACTCCG
TCAGCTAGCTGTTGTTGCCAAATGTCAACTGATACACGTACGGGTTCGAA
TGCCGGCTGGTCACTTTCACAAGCACCATCAAGTTATTTCCCGGCAGCGC
CTGGTGAGAGGTCCGTCCCCGGAGATCCCCACTTCTAATCCCAGTGACCA
GCCGGGTGGCTACGAGCCGAGAGTATCTTTTGTTGCCAAATGTTAAACCA
TTAGACTACACAGTTAGCGCTGACTGAGTCGTCTAATGGGTAAGCCTTTC
TAACAGATTGGCGATAAAATACATGCTTGCTTGGTCATTGACCACACACG
ATGTGTGCATCCATTTCGCTGTCCCTGAAAAGAGACGTCACCGAACGGTT
GGTGGCTCTTAACGGCTCCGCAATGCTTGACAATGATGTGTGTGTGTGTG
AAATTCTTCATCATCGAATGGATGCGCACAACATACTCCGTGCGAGTTTT
TTACTCCTATAGTGCCCCCCCGCCCCCTATACACACAACCATACATACAC
AGCATGGCACTTTCAACTTGATACAGCACCCGCCCAGTTGACGGAACCCC
TCTTTTGGTAGGCCTCTGCCACATGAAAACACGCCACGAATACCCAAACT
TTAACGCCACATGTCTCCAACCCCTTCTACCGGCCCTTCTTCCCCATCCG
ACTGTACGAGAGGAACGCGTGGTCCAAAATCCAGACAACCGAGGTACAAG
AACCCCCCCCCCCCGCCCCCCCTTCCGTGTAGAAAACTCATGAAGCCATT
GGTCGAAAGGACGAGTCTACAAGAAGGCACGCACAACATCGCAACCCCCC
TCCCCCTCCCTGGCCAGGGAGTCGGTACTGGCTTCGCCGCCGGAGGCCGG
CCTTCGAACGCGGGGTGGACATGCGGTCATCCCTGGGGCTGCCGAACGCC
TACTGCGATGTCTTCGACCGCATCGAGAGCCGCGGCGCCGCGTGGTTGGT
CGCGACCGGTCATGTGTTGCTTCACGCCTTCGACCCGCCAGCAAGAGAAT
ATGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGATTCTTCTTCCTCATCC
AAGCTGCCCAACGATGGCAAGGGCGTCGGTGGCCGGCGGGCGACGAGAGG
GGAGGGGCGCGATGGCGACAGGGGTGATGATGGGCGAGATGACGAGGAAC
GGCGCGAGGAACAGTACCGACGGCTGCTGGACAACTGCCTGGAACCACCG
TGGTACGAGAAGAAGATCGAAAAAACGGCGGCCACTACGACAGCGATCGA
AGCGGTAGGAGGGAAAGCGATGCCGTCGCTGACGGCCGCCCTGACTAGAC
TCACGAACAGCTCGACATCTGCGACCTCATCTCTGCCCAGCGGCACGAGG
AGCGCCAAGAACAAAAGCATCGGACAAGCAAATTCTCCTGCAGTCACAGT
AGCACAACCAGGCAGCCCTAGCGGCAATCTCCAGGCGCAGCCAAGGCCGT
CGTCCACCCTATCGAGCCCGCAGACGATGACGCCATTGTCACTTCCTAGT
AGCGCGGGAACAGGCCGTAGACGGCGAAGCCGTAGCCCTAGCCGAAGATC
CCACAGGCAAGGTGGGAACAGAACGGGCACCCGCTCCCCTGCGGCGAACA
CCGGCCTTCCAGCCACCACGGCCGTCGGGCTCGGCGGCAAGACTTGCGCT
GTGTGCCTCCGGCGATCGTCCCCCGCCGCCATGTGCCCCAAGTGCGGCCG
CCGAGCCGCCAAGTCTCTGAAGGACAGGGAGGGCTCCCGCAAGGCCCGGG
TGATCCTCGTCCCGTACGGCGGCCACTTCGGGGTGGGCGAGGCGGGCGCC
CTGCAGAGAGAGGGCGACTCGATCAAGCGCTGGGTCCGACTGCTGGACGA
CGAGACCGGGGCGGACTTTTACCACAACGTCCACTACGGCTCTTCGGTCT
GGAAGTCCGGGATCGAACTGCCGAAGCCTGCGCCCGTTGTGAAGGCCGCC
CGGCGGCGGCGAAAGGTTGGTGATGGCGGCGGCGGGGTGGTGGCAGTGGT
AGGCTCGCCGAACTCTGCGGCCTCTGTTCCCCGCAGTACCAACCCCCCCG
CCCCCGGGAGCCCCGCGGCTCGAGCCTTGCCGATGGCGAGAGCGGCTACC
AGCCCCCGCGCGATGGGGATGGCGGCATCCGGTGGTATTGTCCACCGGAC
GGCGCTGGTGCGAAGGACCATGACGGCGTTTTCGGCCGCGTCGATTGCGG
CTCTGAGGGCCGCTGCGGGAGGTACCGCCAATGGCGGCGACCGCAACGAC
GGCGAGGACGACGATAGGAAGAGCAAGAATTACGACAACGACTTCGACGA
AAACAACGGCAACGCCAACAAGGGCACCTCTTCTCCAAGACCGATCATCA
AGCAGGCCATAAAAAAAGCAGTGGCTGTGTCATCACCCACGTCGTCCCCG
TCTCCGCAACGGGAAAACGCCTCCGCCTCTCCCACGGCCGCCGCCGCTTC
GCCCGGCCGCAACCGAGTGGTAGTGCGTGACGCGGGGGACGCAGAACCCG
AGGTCGTCCTCGACGCCCACAGGAGGATCTATCCGCCATTCAGACTCGTC
TCGTGGGAGGATGTAGAAGCCGCGGCGGTGGCGGCGGAGTTGGCAGGCGT
GAAAGGCGTTTCGCCAAGGCCGGGGACGGGGATGTCGGGGAGGAAGAGTC
ACTCGCAGGGGACGTCCAGGGATTCGGCCGGCAGGGGGCGGCGGCTAAGG
CTGACGACGGCGGTGACCAAGGGCGGCGGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig780:2539..8721+

>mRNA_Ecto-sp13_S_contig780.19052.1 ID=mRNA_Ecto-sp13_S_contig780.19052.1|Name=mRNA_Ecto-sp13_S_contig780.19052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig780:2539..8721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGGCAACGGAGGCAGTCGTCGAAAGGAAGACGCTAGATATAGCGA
TTCTAGTGATGACGATGATGACGACGAAGACCAAGAGCCGGAAGGACCGC
CGCAGAAGTTTGTGCTCGCCGGGGACGATACGGGCAGCGGCATCGAATAC
AACATCCTAGACGCAGAGTCTTGGCAGAAGCTGGAGCACTATTGTAAGAA
ATGGGGCATCAAGCAGGCGCACCTCGAGTCGATCTACTCTCGGTTCGCCC
GCACTATTATCAGGACGGAGCACCTGGATTTCACGCTCAAGCCCCAGTAC
CACGCAAGTCTGGATTTTCTGGCGGACGAGTTCATGACGACAGCCGGGGA
GTTCGCCGCACAGATCTTCATCCAGACGTGGTTCTTGCGCCGCAAGCGAG
GGCTAGCACCGCCGCAGGATCGGCGGTGTGTCGACTTCACTCGGCTGGTC
ATCATGTGCTCCGATCTGGCACGCCTAGGGGACTACGAGCTGTTGACCAA
CTTGTGGGCATGCGTCTTACACAGGTTCAGCGGCATTCTACCCACTGGCA
CGGTCGACTTGGACACGCGAGTCAACGTCGAGCTGGTTAGGGAAGTGATC
ACTGTGCTGCACGAGACCCTCGATAAGAAGCTCGACCTCTTGATCGACAT
GCTCCTTGAAGAGTCCCAAGAAGTCGAAATACAGGGGGGCGTTGCGAGAA
CGCGGGGGCTTTCCAGTACCAGCAGTGGCGGCGTTGGCGGAACAAGAAGG
ACGGAGGAGGATGGGCAACGCAAAGTCATCCACAAGAGTAACGGGGAGGA
GGCGGAGGGGGCACGGGTGCAAGCGCAGTGGCGGAGATACCTGACGCTCC
GGAGCATCCTCCGTTTTAGCTTCCAGCACCCCCCCCTGATGTTCCCAGTT
GTGCAGTTCCAGCGAGTCCTCAGGTGTAAAATCATCGGGAGTCGGTACTG
GCTTCGCCGCCGGAGGCCGGCCTTCGAACGCGGGGTGGACATGCGGTCAT
CCCTGGGGCTGCCGAACGCCTACTGCGATGTCTTCGACCGCATCGAGAGC
CGCGGCGCCGCGTGGTTGGTCGCGACCGGTCATGTGTTGCTTCACGCCTT
CGACCCGCCAGCAAGAGAATATGCTGCTGCTGCTGCTGCTGCTGCTGCTT
CTGATTCTTCTTCCTCATCCAAGCTGCCCAACGATGGCAAGGGCGTCGGT
GGCCGGCGGGCGACGAGAGGGGAGGGGCGCGATGGCGACAGGGGTGATGA
TGGGCGAGATGACGAGGAACGGCGCGAGGAACAGTACCGACGGCTGCTGG
ACAACTGCCTGGAACCACCGTGGTACGAGAAGAAGATCGAAAAAACGGCG
GCCACTACGACAGCGATCGAAGCGGTAGGAGGGAAAGCGATGCCGTCGCT
GACGGCCGCCCTGACTAGACTCACGAACAGCTCGACATCTGCGACCTCAT
CTCTGCCCAGCGGCACGAGGAGCGCCAAGAACAAAAGCATCGGACAAGCA
AATTCTCCTGCAGTCACAGTAGCACAACCAGGCAGCCCTAGCGGCAATCT
CCAGGCGCAGCCAAGGCCGTCGTCCACCCTATCGAGCCCGCAGACGATGA
CGCCATTGTCACTTCCTAGTAGCGCGGGAACAGGCCGTAGACGGCGAAGC
CGTAGCCCTAGCCGAAGATCCCACAGGCAAGGTGGGAACAGAACGGGCAC
CCGCTCCCCTGCGGCGAACACCGGCCTTCCAGCCACCACGGCCGTCGGGC
TCGGCGGCAAGACTTGCGCTGTGTGCCTCCGGCGATCGTCCCCCGCCGCC
ATGTGCCCCAAGTGCGGCCGCCGAGCCGCCAAGTCTCTGAAGGACAGGGA
GGGCTCCCGCAAGGCCCGGGTGATCCTCGTCCCGTACGGCGGCCACTTCG
GGGTGGGCGAGGCGGGCGCCCTGCAGAGAGAGGGCGACTCGATCAAGCGC
TGGGTCCGACTGCTGGACGACGAGACCGGGGCGGACTTTTACCACAACGT
CCACTACGGCTCTTCGGTCTGGAAGTCCGGGATCGAACTGCCGAAGCCTG
CGCCCGTTGTGAAGGCCGCCCGGCGGCGGCGAAAGGTTGGTGATGGCGGC
GGCGGGGTGGTGGCAGTGGTAGGCTCGCCGAACTCTGCGGCCTCTGTTCC
CCGCAGTACCAACCCCCCCGCCCCCGGGAGCCCCGCGGCTCGAGCCTTGC
CGATGGCGAGAGCGGCTACCAGCCCCCGCGCGATGGGGATGGCGGCATCC
GGTGGTATTGTCCACCGGACGGCGCTGGTGCGAAGGACCATGACGGCGTT
TTCGGCCGCGTCGATTGCGGCTCTGAGGGCCGCTGCGGGAGGTACCGCCA
ATGGCGGCGACCGCAACGACGGCGAGGACGACGATAGGAAGAGCAAGAAT
TACGACAACGACTTCGACGAAAACAACGGCAACGCCAACAAGGGCACCTC
TTCTCCAAGACCGATCATCAAGCAGGCCATAAAAAAAGCAGTGGCTGTGT
CATCACCCACGTCGTCCCCGTCTCCGCAACGGGAAAACGCCTCCGCCTCT
CCCACGGCCGCCGCCGCTTCGCCCGGCCGCAACCGAGTGGTAGTGCGTGA
CGCGGGGGACGCAGAACCCGAGGTCGTCCTCGACGCCCACAGGAGGATCT
ATCCGCCATTCAGACTCGTCTCGTGGGAGGATGTAGAAGCCGCGGCGGTG
GCGGCGGAGTTGGCAGGCGTGAAAGGCGTTTCGCCAAGGCCGGGGACGGG
GATGTCGGGGAGGAAGAGTCACTCGCAGGGGACGTCCAGGGATTCGGCCG
GCAGGGGGCGGCGGCTAAGGCTGACGACGGCGGTGACCAAGGGCGGCGGG
TAG
back to top