mRNA_Ecto-sp13_S_contig7796.19046.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: D7FIJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI) HSP 1 Score: 1055 bits (2727), Expect = 0.000e+0 Identity = 606/656 (92.38%), Postives = 621/656 (94.66%), Query Frame = 1
Query: 34 EAAPHTNSGTSSWHKVDKNAKAPRPVVSSHEARGRRPKSYDSQRWSCPPLFRPVRIPADPASNTDGVSLGELLGGEYTDALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKTIHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGKKKARGKAGKRKRVGADAAPILDEEPXXXXXXXXGDVGKKKRRCESGVAATDDAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VVITSEFEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKTSSKNGKDGKKAIRDIDVGLAEEEXXXXXXXXQDERNKGKNLPKKPLGQRKDPWGDKGILEKRKERADRREAIHRRNVLGILPPKKXXXXXXXXXXXXXXXXXXXXXXXXXAALIKWVGKERKRNWFMKFLRVVWPTEEAVRTSNLGWESGSGMPCLTTTLYEGGYRKCETNYQLNRVMEELKPLLCTWTGAKGMNRGHAMPHLNTYYRYRELPRTDGSLKMSKDGLAYFLLASHSLHRIAWGYLEHVRQSWGERSRQAK 1992
EAAP+TNSGTSSWHKVDKNAK PRPVVSSH+ARGRRPKSYDS+RWSCPPLFRPVRIP+DPASN DGVSLGELLGGEYT+ALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKTIHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGK+KARGKAGKRKRVGADAAPILDEEPXXXXXXXX ESGVAA DDAGGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VVITSEFEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKG+DLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKTSSK+GK+GKKAIRDIDVGLAEEE X QDERNKGKN PKKPLGQRKDPWGDKGILEKRKERA+RREAIHRRNVLGILPPKKXXXXXXXXXXXXXXXXXXXXXXXXXAALIKWVGKERKRNWFMKFLRVVWPTEEAVRTSNLGWESG+GMPCLTTTLYEGGYRKCETNYQLNRVMEELKPLLCTWTGAKGM+RG+AMPHLNTYYRYRELPRTDGSLKMSKDGLAYFLLASHSLHRIAWGYLEH R R+ +
Sbjct: 131 EAAPNTNSGTSSWHKVDKNAKVPRPVVSSHDARGRRPKSYDSERWSCPPLFRPVRIPSDPASNADGVSLGELLGGEYTEALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKTIHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGKEKARGKAGKRKRVGADAAPILDEEPXXXXXXXXXXXXXXXXG-ESGVAAADDAGGAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVITSEFEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGRDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKTSSKDGKNGKKAIRDIDVGLAEEEEMRRKKXEQDERNKGKNQPKKPLGQRKDPWGDKGILEKRKERAERREAIHRRNVLGILPPKKXXXXXXXXXXXXXXXXXXXXXXXXXAALIKWVGKERKRNWFMKFLRVVWPTEEAVRTSNLGWESGAGMPCLTTTLYEGGYRKCETNYQLNRVMEELKPLLCTWTGAKGMDRGNAMPHLNTYYRYRELPRTDGSLKMSKDGLAYFLLASHSLHRIAWGYLEHRNPPQRPRKRRVR 785
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A6H5KBB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB1_9PHAE) HSP 1 Score: 328 bits (842), Expect = 7.540e-105 Identity = 213/299 (71.24%), Postives = 215/299 (71.91%), Query Frame = 1
Query: 475 MILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGKKKARGKAGKRKRVGADAAPILDEEPXXXXXXXXGDVGKKKRRCESGVAATDDAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VVITSEFE---EILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKTSSKNGKDGKKAIRDIDVGLAEEEXXXXXXXXQDERNKGKNLPKKPLG 1356
MILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQ FPFKPPRAKSKGK+KARGKAG RKRVGADAAPILDEEPXXXXXXXX XXXXXXXXX XXXXXXX VVITSEFE EILIDYFEHVGGPAAVWGRSL AYDFSSAN TLIPSVPGRHKGKDLYR VAFQAAS+MNLS RPYKWLGEITESFMAEKT KNGKDGKKAIRDIDVGLAEEE QDERNKGKN PKKPLG
Sbjct: 1 MILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQGFPFKPPRAKSKGKEKARGKAGTRKRVGADAAPILDEEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRVASDSEEDYPKEGXXXXXXXHDDVVITSEFEVGEEILIDYFEHVGGPAAVWGRSLFAYDFSSANATLIPSVPGRHKGKDLYR-----------------------VAFQAASVMNLSLRPYKWLGEITESFMAEKTGGKNGKDGKKAIRDIDVGLAEEEEVRMKTKEQDERNKGKNKPKKPLG 276
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A2D4BMS2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMS2_PYTIN) HSP 1 Score: 107 bits (267), Expect = 2.570e-20 Identity = 105/412 (25.49%), Postives = 154/412 (37.38%), Query Frame = 1
Query: 154 DSQRWSCPPLFRPVRIPADPAS-NTDGVSLGELLGGEYTDALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKTIHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGKKKARGKAGKRKRVGA------------------DAAPILDEEPXXXXXXXXGDVGKKKRR-----CESGVAATD-------------------------------------DAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVITSEFEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWL-GEITESFM 1203
++ R P F R+ PA+ N V L +LL GE++ L+ +Y+ D +L N PRL VP +L+ G ++ + + + F A LP I G HH+KM+++ Y T VRV I T N P DW + Q W+QDF + ++ R G VG D A + +E P G++ R C T D V +F+ L++Y +G P + R L +DFS+A V L+PSVPG H G +YGH+RVR +L + +V H + Q +S+ +L KWL GE ES M
Sbjct: 479 EAPRALAPLGFHLTRLQNAPAAHNLYAVGLSDLLSGEFSRVLLTNYMYDLAWLFNECPRLADVPVVLVHGERDREAMQHDCRGFTNVT--AVAPRLP--IAYGTHHTKMMVVVYATKVRVAIFTANFIPIDWNNKTQGVWFQDFELATIGEDDEEDERKRADLGAVYAVGLSDLLSGEFSRVLLTNYMYDLAWLFNECPRLADVPVVLVHGERDREAMQHDCRGFTNVTAVAPRLPIAYGTHHTKMMVVVYATKVRVAIFTANFIPIDWNNKTQGVWFQDFELATIGEDDEEDERKRADLGAGAGVEPVVDFKRDLVEYLSTLGAPVVAFCRELERFDFSTATVALVPSVPGYHTGAAKDKYGHLRVRRIL--QHFNVPRSDHPLICQFSSLGSLDE---KWLFGEFAESLM 881
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: D8LE95_ECTSI (Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI) HSP 1 Score: 100 bits (248), Expect = 2.750e-18 Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1
Query: 904 FEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGR-----------HKGKDLYRYGHMRVRAVLAREE-----VHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKTSSKNGKDGKKAI 1251
F+E L+ + VGGPA+ + +L YDF A V L+PSVPG HKG+DL++YGHMRVRA+LARE+ ++ G H+V Q +S+ +L++ P +WL EI SFM + K + ++++
Sbjct: 224 FQEDLMGFLFKVGGPASAFASTLGEYDFRGARVALVPSVPGTGGNTPGTGGKPHKGRDLHKYGHMRVRALLAREKEDGTGAKLKEGGHKVLCQISSLASLTKTPNRWLSEILASFMPLEDEGKKAEPTRRSV 355
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A2Z7BX37_9LAMI (Tyrosyl-DNA phosphodiesterase 1-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BX37_9LAMI) HSP 1 Score: 97.1 bits (240), Expect = 3.690e-17 Identity = 56/158 (35.44%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 151 YDSQRWSCPPLFRPVRIPADPA-SNTDGVSLGELLGGEYTDALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYL--PKTIHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKG 615
+ + + P F+ +R+ P +NT+ VS+ +++ G+ A++++Y+VD ++LL+A P +K VP +L+ + D L ++KR PA + P I G HHSK +LL Y GVRVV+ T N+ DW + QA W QDFP+K P + ++G
Sbjct: 171 FQNSKDKLPLAFKLLRVKELPEWTNTNTVSISDVIRGDVIVAILSNYMVDIDWLLSACPTIKRVPHVLVIHGEGDGTL-----EYMKRNKPANWILHKPPLPISYGTHHSKAMLLIYPRGVRVVVHTANLIYVDWNNKSQALWMQDFPWKDPSSANRG 323
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A7I4A141_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A141_PHYPA) HSP 1 Score: 90.9 bits (224), Expect = 2.040e-15 Identity = 83/357 (23.25%), Postives = 139/357 (38.94%), Query Frame = 1
Query: 184 FRPVRIPADPA-SNTDGVSLGELLGGEYTDALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKT-IHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGKKKARGKAGKRKRVGADAAPILDEEPXXXXXXXXGDVGKKKRRCESGVAATDDAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVITSEFEEILIDYFEHVG-----------GPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKT 1215
FR +++ P +N V++ ++ G+ AL+++Y+VD ++LL A PRLKTVP ++I + S++ R+ + +++ P + G HH+K + L Y TG+R+V+ T N+ DW + Q W QDFP+K VAA + S FE L++Y + + G V +D+SSA V L+ SVPG H G++L ++GH+++R +L + +Q +S+ +L KW+GE S A T
Sbjct: 126 FRLMQVKGLPQWANKGCVNIRGVIQGDVQVALLSNYMVDIDWLLEACPRLKTVPSVVIFHGESGG----SLELLQARKPNSWLLHKPPLRLSYGTHHTKAMFLLYPTGIRIVVHTANLIYIDWNNKSQGLWTQDFPYK------------------------------------------------------NVAAGESK---------------------------------------PSPFENDLVEYLQALEWTGCIAIISGIGEVHVDAAFFRKFDYSSAMVRLVASVPGYHLGRNLTKWGHLKLRTILQEQHFEEHFKGSPCVYQFSSLGSLDE---KWMGEFGSSIQAGST 382
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A2K1JYQ2_PHYPA (Uncharacterized protein n=9 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JYQ2_PHYPA) HSP 1 Score: 90.9 bits (224), Expect = 2.960e-15 Identity = 83/357 (23.25%), Postives = 139/357 (38.94%), Query Frame = 1
Query: 184 FRPVRIPADPA-SNTDGVSLGELLGGEYTDALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKT-IHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGKKKARGKAGKRKRVGADAAPILDEEPXXXXXXXXGDVGKKKRRCESGVAATDDAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVITSEFEEILIDYFEHVG-----------GPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKT 1215
FR +++ P +N V++ ++ G+ AL+++Y+VD ++LL A PRLKTVP ++I + S++ R+ + +++ P + G HH+K + L Y TG+R+V+ T N+ DW + Q W QDFP+K VAA + S FE L++Y + + G V +D+SSA V L+ SVPG H G++L ++GH+++R +L + +Q +S+ +L KW+GE S A T
Sbjct: 252 FRLMQVKGLPQWANKGCVNIRGVIQGDVQVALLSNYMVDIDWLLEACPRLKTVPSVVIFHGESGG----SLELLQARKPNSWLLHKPPLRLSYGTHHTKAMFLLYPTGIRIVVHTANLIYIDWNNKSQGLWTQDFPYK------------------------------------------------------NVAAGESK---------------------------------------PSPFENDLVEYLQALEWTGCIAIISGIGEVHVDAAFFRKFDYSSAMVRLVASVPGYHLGRNLTKWGHLKLRTILQEQHFEEHFKGSPCVYQFSSLGSLDE---KWMGEFGSSIQAGST 508
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A8K1CIS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIS9_PYTOL) HSP 1 Score: 83.6 bits (205), Expect = 3.430e-13 Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 898 SEFEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWL-GEITESFMAEKTSSKNG 1230
++FE LI+Y +G P + + LS +DFS+A V LIPSVPG H GK +++YGH+RVRA+L + V P H + Q +S+ +L KWL GE S M T +G
Sbjct: 205 ADFERDLIEYLSTLGTPVVTFCKELSRFDFSTATVALIPSVPGAHTGKAMHKYGHLRVRALL--KHFAVAPSDHPLICQFSSLGSLDE---KWLFGEFAGSLMPGPTQLASG 311
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A6A4E9V0_9STRA (Tyrosyl-DNA phosphodiesterase 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E9V0_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.970e-12 Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 898 SEFEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWL-GEITESFMAEK 1212
++FE L+ Y +G ++ R L +DFSSA V L+PSVPG HKGKD+ +YGH+RVR +L +V P + + Q +S+ +L KWL GE ESF+ K
Sbjct: 208 NDFEADLVHYLSSLGAQVKIFCRELKRFDFSSARVALVPSVPGYHKGKDMEKYGHLRVRKLLKMYQVP--PTDNPLICQFSSMGSLDE---KWLFGEFAESFLPGK 308
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Match: A0A7I3ZXW4_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I3ZXW4_PHYPA) HSP 1 Score: 81.3 bits (199), Expect = 2.080e-12 Identity = 80/354 (22.60%), Postives = 137/354 (38.70%), Query Frame = 1
Query: 184 FRPVRIPADPA-SNTDGVSLGELLGGEYTDALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKT-IHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRAKSKGKKKARGKAGKRKRVGADAAPILDEEPXXXXXXXXGDVGKKKRRCESGVAATDDAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVITSEFEEILIDYFEHVG-----------GPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGKDLYRYGHMRVRAVLARE--EVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESF 1200
FR +++ P +N V++ ++ G+ AL+++Y+VD ++LL A PRLKTVP ++I + S++ R+ + +++ P + G HH+K + L Y TG+R+V+ T N+ DW + Q W QDFP+K VAA + S FE L++Y + + G V +D+SSA V L+ SVPG H G++L ++GH+++R +L + E H + + + NL +K G + +F
Sbjct: 252 FRLMQVKGLPQWANKGCVNIRGVIQGDVQVALLSNYMVDIDWLLEACPRLKTVPSVVIFHGESGG----SLELLQARKPNSWLLHKPPLRLSYGTHHTKAMFLLYPTGIRIVVHTANLIYIDWNNKSQGLWTQDFPYK------------------------------------------------------NVAAGESK---------------------------------------PSPFENDLVEYLQALEWTGCIAIISGIGEVHVDAAFFRKFDYSSAMVRLVASVPGYHLGRNLTKWGHLKLRTILQEQHFEEHFKGSPCVYQDRHLEMSNLVLAQFKSSGLLWRTF 508 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7796.19046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7796.19046.1 >prot_Ecto-sp13_S_contig7796.19046.1 ID=prot_Ecto-sp13_S_contig7796.19046.1|Name=mRNA_Ecto-sp13_S_contig7796.19046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=664bp PPPPPPPPPQSEAAPHTNSGTSSWHKVDKNAKAPRPVVSSHEARGRRPKSback to top mRNA from alignment at Ecto-sp13_S_contig7796:110..6528+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7796.19046.1 ID=mRNA_Ecto-sp13_S_contig7796.19046.1|Name=mRNA_Ecto-sp13_S_contig7796.19046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7796:110..6528+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7796:110..6528+ >mRNA_Ecto-sp13_S_contig7796.19046.1 ID=mRNA_Ecto-sp13_S_contig7796.19046.1|Name=mRNA_Ecto-sp13_S_contig7796.19046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7796:110..6528+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |